Wall clock time and date at job start Tue Mar 31 2020 17:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47293 * 2 1 4 4 N 1.46500 * 109.47036 * 240.00218 * 2 1 3 5 5 S 1.65600 * 119.99736 * 171.75771 * 4 2 1 6 6 C 1.81401 * 104.45260 * 64.08157 * 5 4 2 7 7 O 1.42101 * 104.27541 * 180.15284 * 5 4 2 8 8 O 1.42096 * 104.27783 * 308.00608 * 5 4 2 9 9 C 1.50703 * 109.47252 * 119.99715 * 2 1 3 10 10 O 1.21277 * 120.00313 * 261.58412 * 9 2 1 11 11 N 1.34775 * 119.99684 * 81.59164 * 9 2 1 12 12 C 1.47026 * 125.64793 * 354.80021 * 11 9 2 13 13 C 1.54330 * 107.26786 * 181.08506 * 12 11 9 14 14 C 1.55150 * 102.94278 * 22.19481 * 13 12 11 15 15 H 1.09001 * 111.00698 * 82.57543 * 14 13 12 16 16 C 1.53001 * 111.00433 * 206.42494 * 14 13 12 17 17 N 1.46507 * 109.46783 * 287.19866 * 16 14 13 18 18 C 1.36943 * 119.99645 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00209 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99487 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00212 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99649 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47199 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47230 * 120.00076 * 22 20 18 25 25 H 1.48501 * 109.47274 * 240.00144 * 22 20 18 26 26 C 1.47424 * 125.64852 * 174.83019 * 11 9 2 27 27 H 1.09001 * 109.46509 * 299.99678 * 1 2 3 28 28 H 1.09000 * 109.47378 * 59.99965 * 1 2 3 29 29 H 1.09000 * 109.46679 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47672 * 171.87791 * 3 2 1 31 31 H 1.08999 * 109.46913 * 291.88492 * 3 2 1 32 32 H 1.09006 * 109.47276 * 51.87318 * 3 2 1 33 33 H 0.96993 * 120.00320 * 351.74965 * 4 2 1 34 34 H 1.09004 * 109.47104 * 57.84588 * 6 5 4 35 35 H 1.09006 * 109.46894 * 177.84365 * 6 5 4 36 36 H 1.08996 * 109.47264 * 297.84359 * 6 5 4 37 37 H 1.08997 * 109.88514 * 300.49906 * 12 11 9 38 38 H 1.09000 * 109.88130 * 61.67399 * 12 11 9 39 39 H 1.08997 * 110.71802 * 140.56081 * 13 12 11 40 40 H 1.08997 * 110.71567 * 263.65035 * 13 12 11 41 41 H 1.09001 * 109.47061 * 47.19256 * 16 14 13 42 42 H 1.08997 * 109.47621 * 167.19993 * 16 14 13 43 43 H 0.96994 * 120.00241 * 359.97438 * 17 16 14 44 44 H 0.97006 * 120.00158 * 180.02562 * 21 20 18 45 45 H 1.09002 * 110.36876 * 274.68719 * 26 11 9 46 46 H 1.09003 * 110.36723 * 37.00871 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 16 3.6325 -0.6662 -1.5653 6 6 4.4239 -1.5516 -0.1940 7 8 3.7286 -1.4193 -2.7665 8 8 3.9782 0.7117 -1.5349 9 6 2.0324 -0.7104 1.2305 10 8 2.3795 -0.0708 2.2007 11 7 2.0961 -2.0564 1.2527 12 6 1.6101 -2.9548 0.1951 13 6 1.8687 -4.4010 0.6679 14 6 1.9693 -4.2501 2.2087 15 1 0.9796 -4.2344 2.6653 16 6 2.8321 -5.3596 2.8132 17 7 2.0952 -6.6254 2.7776 18 6 2.6709 -7.7668 3.2686 19 1 3.6682 -7.7340 3.6817 20 6 1.9725 -8.9660 3.2353 21 7 0.7573 -9.0060 2.7314 22 14 2.7580 -10.5231 3.9044 23 1 4.1191 -10.2128 4.4105 24 1 1.9283 -11.0590 5.0134 25 1 2.8508 -11.5354 2.8218 26 6 2.6641 -2.8719 2.3416 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1203 1.4460 0.1452 31 1 1.8000 1.9127 -0.9536 32 1 1.5630 1.9966 0.8084 33 1 1.3963 -1.1621 -1.7719 34 1 4.0056 -2.5554 -0.1200 35 1 5.4968 -1.6174 -0.3751 36 1 4.2449 -1.0139 0.7371 37 1 0.5423 -2.8010 0.0398 38 1 2.1528 -2.7649 -0.7309 39 1 1.0356 -5.0498 0.3975 40 1 2.8021 -4.7811 0.2530 41 1 3.7524 -5.4587 2.2375 42 1 3.0747 -5.1094 3.8460 43 1 1.1994 -6.6548 2.4069 44 1 0.2691 -9.8440 2.7085 45 1 3.7416 -2.9764 2.2149 46 1 2.4367 -2.4242 3.3091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690743068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:42 Heat of formation + Delta-G solvation = -99.914120 kcal Electronic energy + Delta-G solvation = -28787.710577 eV Core-core repulsion = 24839.679672 eV Total energy + Delta-G solvation = -3948.030906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.83937 -39.25022 -38.28159 -37.49474 -37.07247 -36.43940 -33.89740 -31.86735 -31.73533 -30.47374 -30.26256 -28.33021 -27.33820 -25.34231 -24.00562 -22.91177 -21.41376 -20.91155 -20.23338 -19.12777 -18.89360 -18.46538 -17.53081 -17.36666 -16.97315 -16.59423 -16.49401 -15.82812 -15.70957 -15.29741 -14.93430 -14.93172 -14.49437 -14.27923 -14.13348 -14.09631 -13.88610 -13.70353 -13.67328 -13.33358 -13.15693 -13.15190 -12.99817 -12.90777 -12.84188 -12.79274 -12.61404 -12.27508 -12.17014 -12.08703 -11.88383 -11.81249 -11.68755 -11.59073 -11.44043 -10.92684 -10.39668 -9.74129 -8.97506 -7.94563 -5.22157 -0.83084 1.18778 1.48690 1.49530 1.58817 1.68728 1.77279 2.56773 2.67604 3.09617 3.20485 3.39917 3.57056 3.59866 3.65091 3.82915 3.86278 3.91075 3.95560 4.18777 4.21921 4.27642 4.42198 4.51793 4.65175 4.71949 4.74786 4.76882 4.82284 4.85546 4.86527 4.94305 5.03481 5.09394 5.20305 5.24659 5.26071 5.38631 5.41867 5.52283 5.97829 6.28265 6.35292 6.91260 7.35875 8.11237 8.34619 9.28829 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.021518 B = 0.002908 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.942881 B = 9627.242805 C =10043.072986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.173 3.827 3 C -0.159 4.159 4 N -1.099 6.099 5 S 2.620 3.380 6 C -0.676 4.676 7 O -0.981 6.981 8 O -0.975 6.975 9 C 0.506 3.494 10 O -0.561 6.561 11 N -0.607 5.607 12 C 0.094 3.906 13 C -0.125 4.125 14 C -0.096 4.096 15 H 0.078 0.922 16 C 0.162 3.838 17 N -0.741 5.741 18 C -0.243 4.243 19 H 0.074 0.926 20 C -0.072 4.072 21 N -0.966 5.966 22 Si 0.968 3.032 23 H -0.268 1.268 24 H -0.295 1.295 25 H -0.293 1.293 26 C 0.111 3.889 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.436 0.564 34 H 0.144 0.856 35 H 0.151 0.849 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.029 0.971 42 H 0.018 0.982 43 H 0.376 0.624 44 H 0.251 0.749 45 H 0.082 0.918 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.580 20.352 -9.608 22.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.081 3.919 3 C -0.218 4.218 4 N -0.862 5.862 5 S 2.714 3.286 6 C -0.828 4.828 7 O -0.971 6.971 8 O -0.965 6.965 9 C 0.294 3.706 10 O -0.438 6.438 11 N -0.340 5.340 12 C -0.028 4.028 13 C -0.163 4.163 14 C -0.115 4.115 15 H 0.096 0.904 16 C 0.036 3.964 17 N -0.384 5.384 18 C -0.375 4.375 19 H 0.092 0.908 20 C -0.264 4.264 21 N -0.617 5.617 22 Si 0.798 3.202 23 H -0.192 1.192 24 H -0.223 1.223 25 H -0.220 1.220 26 C -0.012 4.012 27 H 0.096 0.904 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.275 0.725 34 H 0.162 0.838 35 H 0.169 0.831 36 H 0.140 0.860 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.047 0.953 42 H 0.036 0.964 43 H 0.209 0.791 44 H 0.060 0.940 45 H 0.100 0.900 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.428 21.190 -9.682 23.341 hybrid contribution -0.239 -1.829 0.941 2.071 sum 1.189 19.361 -8.740 21.276 Atomic orbital electron populations 1.22088 0.88205 1.04834 1.05344 1.20380 0.99392 0.92015 0.80153 1.22382 1.02740 0.92426 1.04255 1.55658 1.26942 1.68097 1.35515 1.04428 0.74005 0.74738 0.75433 1.30796 1.16056 1.16141 1.19776 1.93606 1.85665 1.74125 1.43712 1.93608 1.83375 1.32363 1.87190 1.21307 0.78111 0.80943 0.90275 1.90745 1.49898 1.65770 1.37414 1.48650 1.59439 1.04794 1.21131 1.22573 1.01734 0.88301 0.90235 1.22708 1.03873 0.95490 0.94184 1.22336 0.99505 0.92909 0.96772 0.90375 1.20684 0.93923 0.84609 0.97222 1.42475 1.17749 1.04228 1.73959 1.19632 0.98909 0.87711 1.31272 0.90828 1.25477 0.97200 1.00784 1.02977 1.69792 1.12698 1.26237 1.52942 0.85150 0.77896 0.79987 0.77179 1.19245 1.22262 1.22035 1.22241 0.98325 0.89441 0.91160 0.90353 0.87976 0.90013 0.91530 0.89341 0.90228 0.72514 0.83806 0.83086 0.86002 0.88153 0.90044 0.89774 0.90215 0.95308 0.96447 0.79135 0.94030 0.89989 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.55 71.98 0.62 -0.77 16 2 C 0.17 2.54 0.78 2.86 0.00 2.54 16 3 C -0.16 -2.73 6.64 71.98 0.48 -2.25 16 4 N -1.10 -13.51 3.07 -155.18 -0.48 -13.99 16 5 S 2.62 44.90 5.54 -56.49 -0.31 44.58 16 6 C -0.68 -10.17 8.60 113.37 0.97 -9.20 16 7 O -0.98 -22.07 18.08 -127.65 -2.31 -24.38 16 8 O -0.98 -22.17 14.53 -127.65 -1.85 -24.02 16 9 C 0.51 10.34 4.07 87.66 0.36 10.70 16 10 O -0.56 -15.62 16.36 -3.02 -0.05 -15.67 16 11 N -0.61 -11.40 1.70 -811.77 -1.38 -12.78 16 12 C 0.09 1.42 4.59 86.73 0.40 1.82 16 13 C -0.12 -2.71 6.37 31.78 0.20 -2.51 16 14 C -0.10 -2.52 3.05 -9.40 -0.03 -2.55 16 15 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 16 C 0.16 5.74 5.71 86.38 0.49 6.24 16 17 N -0.74 -34.83 5.55 -343.43 -1.91 -36.73 16 18 C -0.24 -12.99 9.99 84.03 0.84 -12.15 16 19 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 20 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 21 N -0.97 -56.76 13.06 21.65 0.28 -56.48 16 22 Si 0.97 44.81 29.55 68.60 2.03 46.83 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 26 C 0.11 2.51 6.15 86.86 0.53 3.04 16 27 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.08 0.62 6.54 -2.39 -0.02 0.61 16 30 H 0.07 1.41 6.15 -2.39 -0.01 1.39 16 31 H 0.09 1.32 8.09 -2.39 -0.02 1.31 16 32 H 0.08 1.30 8.11 -2.38 -0.02 1.28 16 33 H 0.44 3.09 8.05 -96.75 -0.78 2.31 16 34 H 0.14 2.01 5.50 -2.39 -0.01 2.00 16 35 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.12 2.13 5.96 -2.39 -0.01 2.12 16 37 H 0.10 1.12 6.65 -2.39 -0.02 1.10 16 38 H 0.08 0.94 4.56 -2.39 -0.01 0.93 16 39 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.08 1.77 7.92 -2.39 -0.02 1.75 16 41 H 0.03 1.00 7.97 -2.39 -0.02 0.98 16 42 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.38 18.64 7.67 -92.71 -0.71 17.93 16 44 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 45 H 0.08 1.73 7.90 -2.39 -0.02 1.71 16 46 H 0.07 1.81 7.99 -2.39 -0.02 1.79 16 Total: -1.00 -74.61 362.78 -1.12 -75.73 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: -0.48 Total: 25.51 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 5.33 Total: -8.60 kcal Atomic # 7 Polarization: -116.50 SS G_CDS: -3.48 Total: -119.98 kcal Atomic # 8 Polarization: -59.86 SS G_CDS: -4.21 Total: -64.07 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 44.90 SS G_CDS: -0.31 Total: 44.58 kcal Total: -74.61 -1.12 -75.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690743068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.183 kcal (2) G-P(sol) polarization free energy of solvation -74.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds