Wall clock time and date at job start Tue Mar 31 2020 17:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 S 1.81401 * 109.47149 * 179.97438 * 4 3 2 6 6 O 1.42093 * 110.54547 * 291.62539 * 5 4 3 7 7 O 1.42105 * 110.53941 * 68.37879 * 5 4 3 8 8 N 1.65595 * 104.44822 * 179.97438 * 5 4 3 9 9 C 1.46502 * 120.00123 * 65.00073 * 8 5 4 10 10 C 1.50700 * 109.47286 * 164.99496 * 9 8 5 11 11 O 1.21278 * 119.99883 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99739 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99885 * 180.02562 * 12 10 9 14 14 H 1.09005 * 112.84963 * 25.32727 * 13 12 10 15 15 C 1.53776 * 113.61892 * 156.52951 * 13 12 10 16 16 C 1.53776 * 87.08307 * 139.97594 * 15 13 12 17 17 H 1.09004 * 113.61309 * 89.11904 * 16 15 13 18 18 N 1.46497 * 113.61841 * 219.93286 * 16 15 13 19 19 C 1.36930 * 120.00641 * 205.00262 * 18 16 15 20 20 H 1.08004 * 119.99766 * 0.02562 * 19 18 16 21 21 C 1.38819 * 120.00525 * 180.02562 * 19 18 16 22 22 N 1.31616 * 120.00233 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99749 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46973 * 89.99733 * 23 21 19 25 25 H 1.48494 * 109.47268 * 210.00132 * 23 21 19 26 26 H 1.48501 * 109.47184 * 330.00437 * 23 21 19 27 27 C 1.53789 * 113.61129 * 254.13746 * 13 12 10 28 28 H 1.09001 * 109.47289 * 60.00300 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00216 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99783 * 2 1 3 32 32 H 1.09001 * 109.46832 * 119.99974 * 2 1 3 33 33 H 1.09002 * 109.47103 * 59.99753 * 3 2 1 34 34 H 1.08998 * 109.46862 * 300.00565 * 3 2 1 35 35 H 1.09002 * 109.47153 * 59.99783 * 4 3 2 36 36 H 1.09001 * 109.46832 * 299.99974 * 4 3 2 37 37 H 0.96997 * 120.00334 * 245.00088 * 8 5 4 38 38 H 1.09001 * 109.47518 * 285.00260 * 9 8 5 39 39 H 1.09008 * 109.46612 * 44.99751 * 9 8 5 40 40 H 0.97000 * 120.00094 * 359.97438 * 12 10 9 41 41 H 1.09003 * 113.61246 * 254.53149 * 15 13 12 42 42 H 1.09006 * 113.61214 * 25.34536 * 15 13 12 43 43 H 0.97009 * 119.99528 * 25.00533 * 18 16 15 44 44 H 0.96998 * 120.00081 * 179.97438 * 22 21 19 45 45 H 1.08991 * 113.61169 * 334.56674 * 27 13 12 46 46 H 1.08996 * 113.61241 * 105.47038 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 16 4.1747 3.1527 -0.0001 6 8 3.8791 3.7855 -1.2375 7 8 3.8781 3.7869 1.2365 8 7 5.8243 3.0077 0.0014 9 6 6.5080 2.4085 -1.1475 10 6 7.9806 2.7204 -1.0743 11 8 8.4161 3.3779 -0.1530 12 7 8.8135 2.2685 -2.0328 13 6 10.2451 2.5712 -1.9614 14 1 10.5879 2.7586 -0.9438 15 6 11.1249 1.5742 -2.7340 16 6 11.9624 2.7828 -3.1841 17 1 12.7756 3.0292 -2.5012 18 7 12.3959 2.7088 -4.5815 19 6 13.5164 3.3830 -4.9875 20 1 14.0810 3.9690 -4.2773 21 6 13.9268 3.3132 -6.3118 22 7 15.0042 3.9609 -6.7018 23 14 12.9508 2.2991 -7.5399 24 1 11.9082 3.1504 -8.1672 25 1 13.8637 1.7800 -8.5897 26 1 12.3044 1.1606 -6.8389 27 6 10.7002 3.6382 -2.9711 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9562 -0.8899 35 1 3.9337 0.9284 -0.8891 36 1 3.9329 0.9287 0.8909 37 1 6.3379 3.3194 0.7629 38 1 6.3642 1.3282 -1.1331 39 1 6.0953 2.8177 -2.0697 40 1 8.4652 1.7423 -2.7695 41 1 11.6680 0.8817 -2.0909 42 1 10.6040 1.0739 -3.5504 43 1 11.8890 2.1821 -5.2192 44 1 15.2912 3.9118 -7.6271 45 1 10.0635 3.7043 -3.8532 46 1 10.9011 4.6095 -2.5190 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714017104.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:13 Heat of formation + Delta-G solvation = -86.721306 kcal Electronic energy + Delta-G solvation = -25909.610132 eV Core-core repulsion = 21962.151309 eV Total energy + Delta-G solvation = -3947.458822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.19311 -38.32104 -37.50403 -36.46207 -36.27946 -35.10076 -34.32711 -32.83990 -31.08461 -30.57120 -27.69997 -25.32488 -24.94996 -24.43809 -22.08249 -21.91769 -20.72402 -19.86029 -19.65881 -18.40219 -17.56589 -17.28372 -16.91372 -16.54164 -16.42588 -15.96092 -15.65789 -15.14589 -14.79936 -14.56794 -14.34814 -14.01533 -13.78312 -13.48247 -13.43509 -13.32454 -12.75591 -12.51917 -12.46151 -12.39692 -12.33837 -12.27935 -12.18021 -12.13250 -11.87523 -11.83644 -11.27716 -11.12004 -11.01659 -10.87950 -10.53448 -10.42378 -10.23799 -10.11656 -9.88473 -9.63655 -9.05350 -8.93219 -7.34383 -5.83464 -3.20016 -0.22990 2.19180 2.35883 3.00436 3.30490 3.33126 3.33403 3.39940 3.70225 3.90672 4.18062 4.26356 4.33404 4.52042 4.56304 4.64381 4.74933 4.81381 4.85028 4.88451 5.02062 5.03272 5.11709 5.14621 5.19651 5.27299 5.35106 5.47817 5.54481 5.55955 5.69752 5.69920 5.90347 6.02095 6.10710 6.24170 6.47558 6.50633 6.57164 6.85365 7.34980 7.92259 7.98927 8.35757 9.12787 9.84944 10.03909 11.34571 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.020694 B = 0.001911 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.727830 B =14649.730661 C =15285.196148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.116 4.116 3 C -0.115 4.115 4 C -0.631 4.631 5 S 2.614 3.386 6 O -0.952 6.952 7 O -0.952 6.952 8 N -1.108 6.108 9 C 0.093 3.907 10 C 0.511 3.489 11 O -0.533 6.533 12 N -0.711 5.711 13 C 0.118 3.882 14 H 0.113 0.887 15 C -0.161 4.161 16 C 0.175 3.825 17 H 0.089 0.911 18 N -0.734 5.734 19 C -0.251 4.251 20 H 0.092 0.908 21 C 0.006 3.994 22 N -0.931 5.931 23 Si 0.886 3.114 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.278 1.278 27 C -0.177 4.177 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.428 0.572 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.401 0.599 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.362 0.638 44 H 0.260 0.740 45 H 0.079 0.921 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.971 -11.362 14.460 33.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.155 4.155 3 C -0.154 4.154 4 C -0.760 4.760 5 S 2.706 3.294 6 O -0.942 6.942 7 O -0.942 6.942 8 N -0.871 5.871 9 C -0.038 4.038 10 C 0.295 3.705 11 O -0.409 6.409 12 N -0.361 5.361 13 C 0.013 3.987 14 H 0.130 0.870 15 C -0.201 4.201 16 C 0.063 3.937 17 H 0.106 0.894 18 N -0.373 5.373 19 C -0.381 4.381 20 H 0.110 0.890 21 C -0.190 4.190 22 N -0.578 5.578 23 Si 0.716 3.284 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.219 4.219 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.267 0.733 38 H 0.113 0.887 39 H 0.129 0.871 40 H 0.236 0.764 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.195 0.805 44 H 0.070 0.930 45 H 0.098 0.902 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -27.944 -9.982 14.926 33.215 hybrid contribution -0.385 -1.585 -1.137 1.989 sum -28.329 -11.567 13.788 33.562 Atomic orbital electron populations 1.21820 0.95322 1.02121 1.02266 1.21478 0.96231 0.95111 1.02686 1.21386 0.89992 1.00088 1.03912 1.30660 1.07000 1.26422 1.11942 1.04955 0.72746 0.77216 0.74483 1.93620 1.83164 1.71895 1.45531 1.93628 1.82753 1.72790 1.45054 1.55386 1.25867 1.77964 1.27867 1.21132 0.92348 0.99332 0.90945 1.20325 0.87940 0.79727 0.82522 1.90708 1.77313 1.38774 1.34137 1.45994 1.08692 1.55020 1.26441 1.22545 0.77787 0.98015 1.00337 0.86961 1.23885 0.98305 0.98367 0.99519 1.21355 0.92872 0.92081 0.87414 0.89353 1.42688 1.31159 1.58661 1.04814 1.19143 1.01116 1.23028 0.94820 0.89016 1.24707 0.97460 0.99901 0.96965 1.69699 1.25083 1.46137 1.16861 0.86539 0.79696 0.80329 0.81837 1.21037 1.21674 1.20387 1.24345 1.00711 0.98672 0.98177 0.92371 0.92331 0.92418 0.91444 0.91490 0.90171 0.90105 0.84870 0.84608 0.73342 0.88749 0.87096 0.76409 0.91055 0.90101 0.80478 0.92962 0.90191 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.60 9.91 37.16 0.37 -0.24 16 2 C -0.12 -0.45 5.93 -26.74 -0.16 -0.61 16 3 C -0.11 -0.53 5.22 -26.74 -0.14 -0.67 16 4 C -0.63 -2.44 6.07 37.16 0.23 -2.21 16 5 S 2.61 20.43 5.46 -107.50 -0.59 19.85 16 6 O -0.95 -10.61 17.50 -57.54 -1.01 -11.61 16 7 O -0.95 -10.81 18.08 -57.54 -1.04 -11.85 16 8 N -1.11 -8.75 5.82 -11.65 -0.07 -8.81 16 9 C 0.09 0.63 6.61 -5.19 -0.03 0.59 16 10 C 0.51 5.48 7.90 -10.98 -0.09 5.39 16 11 O -0.53 -7.84 15.35 5.56 0.09 -7.75 16 12 N -0.71 -7.07 5.36 -53.01 -0.28 -7.36 16 13 C 0.12 1.50 4.21 -67.12 -0.28 1.22 16 14 H 0.11 1.52 7.50 -51.93 -0.39 1.13 16 15 C -0.16 -2.13 7.58 -25.92 -0.20 -2.33 16 16 C 0.17 3.09 4.48 -67.03 -0.30 2.79 16 17 H 0.09 1.60 8.10 -51.93 -0.42 1.18 16 18 N -0.73 -16.40 5.21 -52.55 -0.27 -16.67 16 19 C -0.25 -6.88 10.45 -15.06 -0.16 -7.04 16 20 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 21 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 22 N -0.93 -28.73 13.97 55.49 0.78 -27.96 16 23 Si 0.89 21.36 27.74 -169.99 -4.71 16.65 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.28 -6.19 6.52 56.52 0.37 -5.82 16 27 C -0.18 -2.78 7.70 -25.82 -0.20 -2.98 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.13 0.23 8.14 -51.92 -0.42 -0.19 16 36 H 0.14 0.31 8.14 -51.92 -0.42 -0.11 16 37 H 0.43 3.83 7.66 -34.47 -0.26 3.57 16 38 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.11 0.65 7.70 -51.92 -0.40 0.25 16 40 H 0.40 2.80 8.71 -40.82 -0.36 2.44 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 43 H 0.36 7.85 5.79 -40.82 -0.24 7.61 16 44 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 45 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 392.55 15.07 5.92 5.92 Total: -1.00 -38.09 392.55 -9.83 -47.92 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -7.57 Total: 7.70 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -1.06 Total: -6.02 kcal Atomic # 7 Polarization: -60.95 SS G_CDS: 0.15 Total: -60.80 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -1.96 Total: -31.22 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.71 Total: 16.65 kcal Atomic # 16 Polarization: 20.43 SS G_CDS: -0.59 Total: 19.85 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.09 -9.83 -47.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714017104.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.799 kcal (2) G-P(sol) polarization free energy of solvation -38.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds