Wall clock time and date at job start Tue Mar 31 2020 17:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 S 1.81401 * 109.47149 * 179.97438 * 4 3 2 6 6 O 1.42093 * 110.54547 * 291.62539 * 5 4 3 7 7 O 1.42105 * 110.53941 * 68.37879 * 5 4 3 8 8 N 1.65595 * 104.44822 * 179.97438 * 5 4 3 9 9 C 1.46502 * 120.00123 * 65.00073 * 8 5 4 10 10 C 1.50700 * 109.47286 * 164.99496 * 9 8 5 11 11 O 1.21278 * 119.99883 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99739 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99885 * 180.02562 * 12 10 9 14 14 H 1.09005 * 112.84963 * 25.32727 * 13 12 10 15 15 C 1.53776 * 113.61892 * 156.52951 * 13 12 10 16 16 C 1.53776 * 87.08307 * 139.97594 * 15 13 12 17 17 H 1.09004 * 113.61309 * 89.11904 * 16 15 13 18 18 N 1.46497 * 113.61841 * 219.93286 * 16 15 13 19 19 C 1.36930 * 120.00641 * 205.00262 * 18 16 15 20 20 H 1.08004 * 119.99766 * 0.02562 * 19 18 16 21 21 C 1.38819 * 120.00525 * 180.02562 * 19 18 16 22 22 N 1.31616 * 120.00233 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99749 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46973 * 89.99733 * 23 21 19 25 25 H 1.48494 * 109.47268 * 210.00132 * 23 21 19 26 26 H 1.48501 * 109.47184 * 330.00437 * 23 21 19 27 27 C 1.53789 * 113.61129 * 254.13746 * 13 12 10 28 28 H 1.09001 * 109.47289 * 60.00300 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00216 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99783 * 2 1 3 32 32 H 1.09001 * 109.46832 * 119.99974 * 2 1 3 33 33 H 1.09002 * 109.47103 * 59.99753 * 3 2 1 34 34 H 1.08998 * 109.46862 * 300.00565 * 3 2 1 35 35 H 1.09002 * 109.47153 * 59.99783 * 4 3 2 36 36 H 1.09001 * 109.46832 * 299.99974 * 4 3 2 37 37 H 0.96997 * 120.00334 * 245.00088 * 8 5 4 38 38 H 1.09001 * 109.47518 * 285.00260 * 9 8 5 39 39 H 1.09008 * 109.46612 * 44.99751 * 9 8 5 40 40 H 0.97000 * 120.00094 * 359.97438 * 12 10 9 41 41 H 1.09003 * 113.61246 * 254.53149 * 15 13 12 42 42 H 1.09006 * 113.61214 * 25.34536 * 15 13 12 43 43 H 0.97009 * 119.99528 * 25.00533 * 18 16 15 44 44 H 0.96998 * 120.00081 * 179.97438 * 22 21 19 45 45 H 1.08991 * 113.61169 * 334.56674 * 27 13 12 46 46 H 1.08996 * 113.61241 * 105.47038 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 16 4.1747 3.1527 -0.0001 6 8 3.8791 3.7855 -1.2375 7 8 3.8781 3.7869 1.2365 8 7 5.8243 3.0077 0.0014 9 6 6.5080 2.4085 -1.1475 10 6 7.9806 2.7204 -1.0743 11 8 8.4161 3.3779 -0.1530 12 7 8.8135 2.2685 -2.0328 13 6 10.2451 2.5712 -1.9614 14 1 10.5879 2.7586 -0.9438 15 6 11.1249 1.5742 -2.7340 16 6 11.9624 2.7828 -3.1841 17 1 12.7756 3.0292 -2.5012 18 7 12.3959 2.7088 -4.5815 19 6 13.5164 3.3830 -4.9875 20 1 14.0810 3.9690 -4.2773 21 6 13.9268 3.3132 -6.3118 22 7 15.0042 3.9609 -6.7018 23 14 12.9508 2.2991 -7.5399 24 1 11.9082 3.1504 -8.1672 25 1 13.8637 1.7800 -8.5897 26 1 12.3044 1.1606 -6.8389 27 6 10.7002 3.6382 -2.9711 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9562 -0.8899 35 1 3.9337 0.9284 -0.8891 36 1 3.9329 0.9287 0.8909 37 1 6.3379 3.3194 0.7629 38 1 6.3642 1.3282 -1.1331 39 1 6.0953 2.8177 -2.0697 40 1 8.4652 1.7423 -2.7695 41 1 11.6680 0.8817 -2.0909 42 1 10.6040 1.0739 -3.5504 43 1 11.8890 2.1821 -5.2192 44 1 15.2912 3.9118 -7.6271 45 1 10.0635 3.7043 -3.8532 46 1 10.9011 4.6095 -2.5190 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714017104.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:12 Heat of formation + Delta-G solvation = -119.005875 kcal Electronic energy + Delta-G solvation = -25911.010096 eV Core-core repulsion = 21962.151309 eV Total energy + Delta-G solvation = -3948.858786 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.14744 -39.48679 -38.21969 -37.08594 -36.65591 -35.96545 -35.61406 -34.29691 -32.45119 -31.38635 -28.44030 -26.54275 -26.09208 -25.27480 -23.53752 -22.19378 -21.63976 -21.08466 -20.39183 -19.53410 -18.98309 -18.05188 -17.64705 -17.27136 -17.12881 -16.66355 -16.47092 -16.25667 -15.96812 -15.74971 -15.04776 -14.85837 -14.69380 -14.45489 -14.24430 -14.21307 -13.78832 -13.63363 -13.55492 -13.29916 -13.25448 -13.18540 -13.12014 -12.87501 -12.65280 -12.45097 -12.34230 -12.15537 -12.01938 -11.88543 -11.78838 -11.67096 -11.52232 -11.45860 -11.00273 -10.88518 -10.50204 -10.00470 -9.27055 -8.01411 -5.35463 -0.78183 1.38781 1.44534 1.51691 1.55403 1.62462 2.22647 2.50358 2.81278 3.22000 3.28399 3.51323 3.60799 3.63453 3.79898 3.83030 3.85490 4.05543 4.12335 4.25984 4.27271 4.32573 4.38092 4.52377 4.60829 4.62366 4.74217 4.77034 4.87409 4.91570 4.92570 5.00183 5.12371 5.16663 5.23266 5.31099 5.32585 5.45325 5.64588 5.78357 5.91213 6.23011 6.57581 7.08966 7.22617 7.84634 8.05007 9.20126 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.020694 B = 0.001911 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.727830 B =14649.730661 C =15285.196148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.115 4.115 3 C -0.129 4.129 4 C -0.600 4.600 5 S 2.614 3.386 6 O -0.994 6.994 7 O -0.998 6.998 8 N -1.115 6.115 9 C 0.090 3.910 10 C 0.507 3.493 11 O -0.579 6.579 12 N -0.699 5.699 13 C 0.136 3.864 14 H 0.104 0.896 15 C -0.135 4.135 16 C 0.149 3.851 17 H 0.072 0.928 18 N -0.736 5.736 19 C -0.238 4.238 20 H 0.052 0.948 21 C -0.069 4.069 22 N -0.986 5.986 23 Si 0.961 3.039 24 H -0.280 1.280 25 H -0.299 1.299 26 H -0.242 1.242 27 C -0.175 4.175 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.168 0.832 36 H 0.161 0.839 37 H 0.422 0.578 38 H 0.150 0.850 39 H 0.123 0.877 40 H 0.420 0.580 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.370 0.630 44 H 0.257 0.743 45 H 0.081 0.919 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.840 -15.147 14.190 37.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.154 4.154 3 C -0.168 4.168 4 C -0.734 4.734 5 S 2.712 3.288 6 O -0.984 6.984 7 O -0.989 6.989 8 N -0.876 5.876 9 C -0.039 4.039 10 C 0.293 3.707 11 O -0.459 6.459 12 N -0.351 5.351 13 C 0.030 3.970 14 H 0.122 0.878 15 C -0.174 4.174 16 C 0.039 3.961 17 H 0.090 0.910 18 N -0.378 5.378 19 C -0.369 4.369 20 H 0.071 0.929 21 C -0.260 4.260 22 N -0.636 5.636 23 Si 0.788 3.212 24 H -0.206 1.206 25 H -0.226 1.226 26 H -0.166 1.166 27 C -0.217 4.217 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.186 0.814 36 H 0.179 0.821 37 H 0.259 0.741 38 H 0.167 0.833 39 H 0.141 0.859 40 H 0.258 0.742 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.204 0.796 44 H 0.066 0.934 45 H 0.100 0.900 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -30.865 -13.762 14.685 36.847 hybrid contribution 0.492 -0.367 -0.935 1.118 sum -30.374 -14.129 13.750 36.211 Atomic orbital electron populations 1.21867 0.95710 1.02383 1.02087 1.21492 0.95966 0.94353 1.03572 1.21548 0.90460 1.00871 1.03913 1.30418 1.06291 1.21665 1.14998 1.04726 0.72409 0.78942 0.72693 1.93562 1.83645 1.74515 1.46664 1.93563 1.83342 1.75395 1.46581 1.55313 1.25718 1.78599 1.27989 1.21448 0.88895 1.02587 0.90952 1.21044 0.89573 0.78538 0.81565 1.90701 1.78424 1.40754 1.36009 1.45793 1.07289 1.54976 1.27075 1.22098 0.79755 0.96177 0.98964 0.87813 1.23667 0.96947 0.96804 0.99985 1.21682 0.93512 0.95924 0.84951 0.90965 1.42606 1.29869 1.58441 1.06870 1.19104 1.01808 1.21891 0.94138 0.92946 1.25617 0.98971 1.02042 0.99351 1.69906 1.27723 1.48835 1.17167 0.85325 0.77883 0.79461 0.78565 1.20616 1.22586 1.16558 1.24235 0.99800 0.98462 0.99227 0.92555 0.91840 0.92723 0.90362 0.90752 0.90609 0.90154 0.81393 0.82103 0.74065 0.83269 0.85901 0.74154 0.89448 0.87980 0.79638 0.93407 0.89999 0.93525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 9.91 71.98 0.71 -0.20 16 2 C -0.12 -0.51 5.93 30.59 0.18 -0.33 16 3 C -0.13 -0.84 5.22 30.59 0.16 -0.68 16 4 C -0.60 -2.25 6.07 71.98 0.44 -1.81 16 5 S 2.61 37.24 5.46 -56.49 -0.31 36.93 16 6 O -0.99 -21.30 17.50 -127.65 -2.23 -23.54 16 7 O -1.00 -22.86 18.08 -127.65 -2.31 -25.17 16 8 N -1.11 -15.44 5.82 -190.78 -1.11 -16.55 16 9 C 0.09 0.88 6.61 85.63 0.57 1.45 16 10 C 0.51 9.53 7.90 87.66 0.69 10.22 16 11 O -0.58 -16.52 15.35 -3.02 -0.05 -16.57 16 12 N -0.70 -11.47 5.36 -440.03 -2.36 -13.83 16 13 C 0.14 3.16 4.21 45.52 0.19 3.35 16 14 H 0.10 2.68 7.50 -2.38 -0.02 2.66 16 15 C -0.13 -3.12 7.58 31.12 0.24 -2.88 16 16 C 0.15 5.15 4.48 45.57 0.20 5.35 16 17 H 0.07 2.69 8.10 -2.38 -0.02 2.67 16 18 N -0.74 -32.17 5.21 -320.18 -1.67 -33.84 16 19 C -0.24 -13.33 10.45 84.04 0.88 -12.45 16 20 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 21 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 22 N -0.99 -62.95 13.97 21.65 0.30 -62.65 16 23 Si 0.96 43.67 27.74 68.60 1.90 45.57 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 26 H -0.24 -9.42 6.52 99.48 0.65 -8.77 16 27 C -0.18 -5.36 7.70 31.18 0.24 -5.12 16 28 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.06 0.29 8.14 -2.38 -0.02 0.27 16 30 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.17 -0.44 8.14 -2.39 -0.02 -0.46 16 36 H 0.16 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.42 7.27 7.66 -96.75 -0.74 6.52 16 38 H 0.15 -0.17 8.14 -2.39 -0.02 -0.19 16 39 H 0.12 0.97 7.70 -2.38 -0.02 0.95 16 40 H 0.42 3.79 8.71 -92.71 -0.81 2.98 16 41 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.10 2.00 8.09 -2.38 -0.02 1.98 16 43 H 0.37 14.93 5.79 -92.70 -0.54 14.40 16 44 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 45 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 46 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -88.30 392.55 -4.01 -92.30 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: -1.15 Total: 23.94 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 4.97 Total: -6.62 kcal Atomic # 7 Polarization: -122.03 SS G_CDS: -4.84 Total: -126.86 kcal Atomic # 8 Polarization: -60.69 SS G_CDS: -4.59 Total: -65.27 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.90 Total: 45.57 kcal Atomic # 16 Polarization: 37.24 SS G_CDS: -0.31 Total: 36.93 kcal Total: -88.30 -4.01 -92.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714017104.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.702 kcal (2) G-P(sol) polarization free energy of solvation -88.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds