Wall clock time and date at job start Tue Mar 31 2020 17:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47158 * 2 1 4 4 N 1.46892 * 109.47295 * 239.99882 * 2 1 3 5 5 C 1.46904 * 111.00131 * 84.99918 * 4 2 1 6 6 C 1.53004 * 109.47204 * 179.97438 * 5 4 2 7 7 N 1.46500 * 109.46825 * 180.02562 * 6 5 4 8 8 C 1.34767 * 124.17456 * 269.72708 * 7 6 5 9 9 O 1.21232 * 127.15800 * 359.97438 * 8 7 6 10 10 C 1.51587 * 105.68525 * 179.97438 * 8 7 6 11 11 N 1.47312 * 103.58951 * 0.31789 * 10 8 7 12 12 C 1.33790 * 124.17887 * 90.02699 * 7 6 5 13 13 O 1.21535 * 123.76958 * 359.96367 * 12 7 6 14 14 C 1.50696 * 109.46864 * 119.99879 * 2 1 3 15 15 C 1.38300 * 119.93262 * 79.72992 * 14 2 1 16 16 C 1.38104 * 120.07247 * 179.72590 * 15 14 2 17 17 C 1.38880 * 119.92810 * 0.54158 * 16 15 14 18 18 O 1.35747 * 120.07174 * 179.75066 * 17 16 15 19 19 C 1.34825 * 117.00597 * 174.44425 * 18 17 16 20 20 H 1.08005 * 119.99735 * 5.05211 * 19 18 17 21 21 C 1.38651 * 120.00550 * 185.05478 * 19 18 17 22 22 N 1.31549 * 120.00140 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99721 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47541 * 89.99511 * 23 21 19 25 25 H 1.48499 * 109.47053 * 210.00090 * 23 21 19 26 26 H 1.48503 * 109.47039 * 329.99530 * 23 21 19 27 27 C 1.38882 * 119.86199 * 359.72799 * 17 16 15 28 28 C 1.38098 * 119.93192 * 0.02562 * 27 17 16 29 29 H 1.09004 * 109.47560 * 300.00220 * 1 2 3 30 30 H 1.08999 * 109.46827 * 59.99621 * 1 2 3 31 31 H 1.08994 * 109.47650 * 179.97438 * 1 2 3 32 32 H 1.00903 * 111.00483 * 321.04811 * 4 2 1 33 33 H 1.08995 * 109.47194 * 300.00538 * 5 4 2 34 34 H 1.09004 * 109.46811 * 60.00512 * 5 4 2 35 35 H 1.09002 * 109.46939 * 300.00241 * 6 5 4 36 36 H 1.08994 * 109.46726 * 60.00600 * 6 5 4 37 37 H 1.08998 * 110.76568 * 241.71559 * 10 8 7 38 38 H 1.09002 * 110.56762 * 118.82619 * 10 8 7 39 39 H 0.97008 * 126.69127 * 179.77451 * 11 10 8 40 40 H 1.08005 * 119.96345 * 359.97438 * 15 14 2 41 41 H 1.08000 * 120.03674 * 180.27353 * 16 15 14 42 42 H 0.97001 * 120.00064 * 180.02562 * 22 21 19 43 43 H 1.07994 * 120.03671 * 179.97438 * 27 17 16 44 44 H 1.08000 * 119.97139 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0825 0.2226 -2.3469 6 6 2.5963 -0.5329 -3.5741 7 7 2.6595 0.3798 -4.7183 8 6 1.6469 0.5783 -5.5852 9 8 0.5536 0.0547 -5.5664 10 6 2.1593 1.5923 -6.5887 11 7 3.5324 1.8679 -6.1320 12 6 3.7315 1.1150 -5.0350 13 8 4.7696 1.1029 -4.4031 14 6 2.0322 -0.7104 1.2305 15 6 2.0608 -2.0926 1.2660 16 6 2.5258 -2.7466 2.3900 17 6 2.9545 -2.0147 3.4897 18 8 3.4074 -2.6546 4.5979 19 6 3.9152 -1.8872 5.5834 20 1 3.8737 -0.8108 5.5053 21 6 4.4907 -2.4798 6.6970 22 7 4.9865 -1.7310 7.6582 23 14 4.5632 -4.3416 6.8316 24 1 5.8265 -4.8329 6.2253 25 1 4.5142 -4.7367 8.2622 26 1 3.4062 -4.9351 6.1143 27 6 2.9194 -0.6268 3.4531 28 6 2.4581 0.0212 2.3242 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.4496 -1.4979 -1.4100 33 1 1.0871 0.6163 -2.5525 34 1 2.7589 1.0462 -2.1182 35 1 3.5918 -0.9263 -3.3681 36 1 1.9202 -1.3567 -3.8030 37 1 1.5570 2.5003 -6.5625 38 1 2.1671 1.1674 -7.5925 39 1 4.1690 2.4742 -6.5421 40 1 1.7228 -2.6612 0.4122 41 1 2.5519 -3.8259 2.4154 42 1 5.3895 -2.1456 8.4371 43 1 3.2517 -0.0550 4.3068 44 1 2.4309 1.1005 2.2949 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121020131.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:52 Heat of formation + Delta-G solvation = -35.088895 kcal Electronic energy + Delta-G solvation = -27375.281226 eV Core-core repulsion = 23294.617402 eV Total energy + Delta-G solvation = -4080.663824 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.74594 -39.31288 -39.01015 -37.87214 -36.52447 -36.27090 -34.91771 -32.38809 -31.59593 -30.21912 -28.61885 -28.12074 -27.57187 -25.29944 -23.69493 -23.26751 -22.48127 -21.82367 -20.84068 -19.94723 -18.48646 -17.80606 -17.62222 -17.27390 -17.10710 -16.09945 -15.92672 -15.73276 -15.10629 -15.00446 -14.64233 -14.56734 -14.30179 -14.16556 -13.89786 -13.76586 -13.63807 -13.39197 -13.03648 -12.75330 -12.54516 -12.40266 -12.23909 -12.11087 -11.58427 -11.45366 -11.37199 -11.11622 -10.72844 -10.68830 -10.66386 -10.56042 -10.18838 -10.10239 -9.99773 -9.33670 -8.82406 -8.50842 -8.18194 -7.23872 -6.37518 -4.03872 1.14419 1.71129 2.20041 2.27792 2.55530 2.63672 3.24973 3.28978 3.43434 3.47666 4.07135 4.27395 4.27969 4.41488 4.54207 4.58918 4.71738 4.90262 4.96253 5.04631 5.09917 5.12161 5.16771 5.25973 5.35819 5.52347 5.62822 5.65204 5.72341 5.83497 5.91795 6.11409 6.19704 6.24856 6.38992 6.58083 6.61780 6.76567 6.87419 6.90512 7.14227 7.27139 7.33481 7.38507 7.66816 7.66911 7.84953 8.08651 8.98115 9.61504 10.70298 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.023631 B = 0.001980 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.615773 B =14136.215967 C =14479.886527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.142 3.858 3 H 0.077 0.923 4 N -0.673 5.673 5 C 0.046 3.954 6 C 0.119 3.881 7 N -0.574 5.574 8 C 0.519 3.481 9 O -0.468 6.468 10 C 0.062 3.938 11 N -0.731 5.731 12 C 0.698 3.302 13 O -0.532 6.532 14 C -0.159 4.159 15 C -0.055 4.055 16 C -0.193 4.193 17 C 0.159 3.841 18 O -0.219 6.219 19 C -0.388 4.388 20 H 0.106 0.894 21 C 0.062 3.938 22 N -0.881 5.881 23 Si 0.906 3.094 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.260 1.260 27 C -0.220 4.220 28 C -0.069 4.069 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.341 0.659 33 H 0.033 0.967 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.442 0.558 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.279 0.721 43 H 0.132 0.868 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.044 7.243 -29.714 31.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.033 3.967 3 H 0.096 0.904 4 N -0.305 5.305 5 C -0.084 4.084 6 C -0.002 4.002 7 N -0.321 5.321 8 C 0.306 3.694 9 O -0.338 6.338 10 C -0.065 4.065 11 N -0.397 5.397 12 C 0.399 3.601 13 O -0.404 6.404 14 C -0.160 4.160 15 C -0.074 4.074 16 C -0.213 4.213 17 C 0.107 3.893 18 O -0.125 6.125 19 C -0.464 4.464 20 H 0.123 0.877 21 C -0.141 4.141 22 N -0.519 5.519 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.184 1.184 27 C -0.239 4.239 28 C -0.087 4.087 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.159 0.841 33 H 0.051 0.949 34 H 0.097 0.903 35 H 0.127 0.873 36 H 0.113 0.887 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.286 0.714 40 H 0.128 0.872 41 H 0.133 0.867 42 H 0.089 0.911 43 H 0.149 0.851 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.316 6.716 -28.823 30.486 hybrid contribution -0.542 -0.149 -0.169 0.587 sum -7.858 6.566 -28.991 30.747 Atomic orbital electron populations 1.22494 0.96960 1.02321 1.01736 1.20197 0.91970 0.96838 0.87692 0.90430 1.60494 1.58032 1.09230 1.02697 1.22232 0.99660 0.96390 0.90122 1.21674 1.05346 0.90710 0.82462 1.46346 1.15031 1.42101 1.28596 1.20938 0.84023 0.82163 0.82279 1.90844 1.19572 1.50480 1.72896 1.22463 0.84239 1.00252 0.99577 1.45445 1.16191 1.47994 1.30046 1.15910 0.83407 0.79236 0.81580 1.91082 1.26490 1.67863 1.54944 1.19096 1.08440 0.93569 0.94908 1.20304 0.97769 0.93374 0.95928 1.20200 1.08854 0.99233 0.92983 1.19130 0.92541 0.90948 0.86698 1.83568 1.69295 1.36398 1.23209 1.20760 1.37204 0.92090 0.96319 0.87679 1.24464 0.95117 1.00192 0.94314 1.69646 1.37581 1.36105 1.08610 0.86177 0.79698 0.83764 0.77229 1.19901 1.20863 1.18396 1.21222 1.08183 0.94345 1.00135 1.20592 0.97107 0.98354 0.92680 0.91627 0.93364 0.92204 0.84079 0.94897 0.90251 0.87294 0.88747 0.85868 0.85891 0.71376 0.87158 0.86697 0.91121 0.85052 0.87525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 9.14 37.16 0.34 -1.60 16 2 C 0.14 1.80 2.78 -68.87 -0.19 1.61 16 3 H 0.08 0.99 7.66 -51.92 -0.40 0.59 16 4 N -0.67 -7.61 5.71 -107.95 -0.62 -8.23 16 5 C 0.05 0.46 5.81 -3.82 -0.02 0.44 16 6 C 0.12 1.05 5.96 -4.04 -0.02 1.03 16 7 N -0.57 -4.66 2.60 -120.73 -0.31 -4.98 16 8 C 0.52 3.57 8.32 -10.55 -0.09 3.48 16 9 O -0.47 -4.61 17.75 5.60 0.10 -4.51 16 10 C 0.06 0.15 7.97 -4.31 -0.03 0.12 16 11 N -0.73 -3.06 6.58 -65.73 -0.43 -3.49 16 12 C 0.70 6.13 8.62 -88.02 -0.76 5.37 16 13 O -0.53 -6.99 17.48 5.33 0.09 -6.90 16 14 C -0.16 -2.59 4.96 -104.57 -0.52 -3.11 16 15 C -0.06 -0.93 9.31 -39.61 -0.37 -1.30 16 16 C -0.19 -3.87 9.99 -39.39 -0.39 -4.27 16 17 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 18 O -0.22 -5.89 8.58 0.07 0.00 -5.89 16 19 C -0.39 -11.10 9.95 30.89 0.31 -10.80 16 20 H 0.11 3.07 5.44 -52.48 -0.29 2.78 16 21 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 22 N -0.88 -25.79 13.96 55.48 0.77 -25.02 16 23 Si 0.91 22.02 28.62 -169.99 -4.86 17.15 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 27 C -0.22 -4.80 9.17 -39.39 -0.36 -5.16 16 28 C -0.07 -1.25 9.66 -39.61 -0.38 -1.63 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.47 7.45 -51.93 -0.39 0.08 16 31 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 32 H 0.34 3.38 7.82 -39.29 -0.31 3.08 16 33 H 0.03 0.32 7.44 -51.93 -0.39 -0.07 16 34 H 0.08 0.90 8.06 -51.93 -0.42 0.48 16 35 H 0.11 1.08 7.86 -51.93 -0.41 0.67 16 36 H 0.09 0.74 8.00 -51.93 -0.42 0.32 16 37 H 0.12 0.04 8.14 -51.93 -0.42 -0.38 16 38 H 0.12 0.01 8.14 -51.93 -0.42 -0.41 16 39 H 0.44 0.85 8.96 -40.82 -0.37 0.48 16 40 H 0.11 1.54 7.25 -52.48 -0.38 1.16 16 41 H 0.11 2.16 8.06 -52.49 -0.42 1.73 16 42 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.13 3.03 5.64 -52.49 -0.30 2.73 16 44 H 0.11 1.69 8.03 -52.49 -0.42 1.26 16 LS Contribution 374.92 15.07 5.65 5.65 Total: -1.00 -34.74 374.92 -8.18 -42.92 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.72 Total: 3.98 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -2.85 Total: -10.70 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: -0.59 Total: -41.71 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.19 Total: -17.29 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.86 Total: 17.15 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.74 -8.18 -42.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121020131.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.830 kcal (2) G-P(sol) polarization free energy of solvation -34.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds