Wall clock time and date at job start Tue Mar 31 2020 17:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47158 * 2 1 4 4 N 1.46892 * 109.47295 * 239.99882 * 2 1 3 5 5 C 1.46904 * 111.00131 * 84.99918 * 4 2 1 6 6 C 1.53004 * 109.47204 * 179.97438 * 5 4 2 7 7 N 1.46500 * 109.46825 * 180.02562 * 6 5 4 8 8 C 1.34767 * 124.17456 * 269.72708 * 7 6 5 9 9 O 1.21232 * 127.15800 * 359.97438 * 8 7 6 10 10 C 1.51587 * 105.68525 * 179.97438 * 8 7 6 11 11 N 1.47312 * 103.58951 * 0.31789 * 10 8 7 12 12 C 1.33790 * 124.17887 * 90.02699 * 7 6 5 13 13 O 1.21535 * 123.76958 * 359.96367 * 12 7 6 14 14 C 1.50696 * 109.46864 * 119.99879 * 2 1 3 15 15 C 1.38300 * 119.93262 * 79.72992 * 14 2 1 16 16 C 1.38104 * 120.07247 * 179.72590 * 15 14 2 17 17 C 1.38880 * 119.92810 * 0.54158 * 16 15 14 18 18 O 1.35747 * 120.07174 * 179.75066 * 17 16 15 19 19 C 1.34825 * 117.00597 * 174.44425 * 18 17 16 20 20 H 1.08005 * 119.99735 * 5.05211 * 19 18 17 21 21 C 1.38651 * 120.00550 * 185.05478 * 19 18 17 22 22 N 1.31549 * 120.00140 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99721 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47541 * 89.99511 * 23 21 19 25 25 H 1.48499 * 109.47053 * 210.00090 * 23 21 19 26 26 H 1.48503 * 109.47039 * 329.99530 * 23 21 19 27 27 C 1.38882 * 119.86199 * 359.72799 * 17 16 15 28 28 C 1.38098 * 119.93192 * 0.02562 * 27 17 16 29 29 H 1.09004 * 109.47560 * 300.00220 * 1 2 3 30 30 H 1.08999 * 109.46827 * 59.99621 * 1 2 3 31 31 H 1.08994 * 109.47650 * 179.97438 * 1 2 3 32 32 H 1.00903 * 111.00483 * 321.04811 * 4 2 1 33 33 H 1.08995 * 109.47194 * 300.00538 * 5 4 2 34 34 H 1.09004 * 109.46811 * 60.00512 * 5 4 2 35 35 H 1.09002 * 109.46939 * 300.00241 * 6 5 4 36 36 H 1.08994 * 109.46726 * 60.00600 * 6 5 4 37 37 H 1.08998 * 110.76568 * 241.71559 * 10 8 7 38 38 H 1.09002 * 110.56762 * 118.82619 * 10 8 7 39 39 H 0.97008 * 126.69127 * 179.77451 * 11 10 8 40 40 H 1.08005 * 119.96345 * 359.97438 * 15 14 2 41 41 H 1.08000 * 120.03674 * 180.27353 * 16 15 14 42 42 H 0.97001 * 120.00064 * 180.02562 * 22 21 19 43 43 H 1.07994 * 120.03671 * 179.97438 * 27 17 16 44 44 H 1.08000 * 119.97139 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0825 0.2226 -2.3469 6 6 2.5963 -0.5329 -3.5741 7 7 2.6595 0.3798 -4.7183 8 6 1.6469 0.5783 -5.5852 9 8 0.5536 0.0547 -5.5664 10 6 2.1593 1.5923 -6.5887 11 7 3.5324 1.8679 -6.1320 12 6 3.7315 1.1150 -5.0350 13 8 4.7696 1.1029 -4.4031 14 6 2.0322 -0.7104 1.2305 15 6 2.0608 -2.0926 1.2660 16 6 2.5258 -2.7466 2.3900 17 6 2.9545 -2.0147 3.4897 18 8 3.4074 -2.6546 4.5979 19 6 3.9152 -1.8872 5.5834 20 1 3.8737 -0.8108 5.5053 21 6 4.4907 -2.4798 6.6970 22 7 4.9865 -1.7310 7.6582 23 14 4.5632 -4.3416 6.8316 24 1 5.8265 -4.8329 6.2253 25 1 4.5142 -4.7367 8.2622 26 1 3.4062 -4.9351 6.1143 27 6 2.9194 -0.6268 3.4531 28 6 2.4581 0.0212 2.3242 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.4496 -1.4979 -1.4100 33 1 1.0871 0.6163 -2.5525 34 1 2.7589 1.0462 -2.1182 35 1 3.5918 -0.9263 -3.3681 36 1 1.9202 -1.3567 -3.8030 37 1 1.5570 2.5003 -6.5625 38 1 2.1671 1.1674 -7.5925 39 1 4.1690 2.4742 -6.5421 40 1 1.7228 -2.6612 0.4122 41 1 2.5519 -3.8259 2.4154 42 1 5.3895 -2.1456 8.4371 43 1 3.2517 -0.0550 4.3068 44 1 2.4309 1.1005 2.2949 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121020131.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:52 Heat of formation + Delta-G solvation = -61.669995 kcal Electronic energy + Delta-G solvation = -27376.433869 eV Core-core repulsion = 23294.617402 eV Total energy + Delta-G solvation = -4081.816467 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.30222 -40.94481 -39.65485 -39.25023 -37.47914 -37.18684 -35.73481 -34.43517 -32.63506 -31.79081 -29.78235 -28.94405 -28.21363 -27.24869 -24.57686 -23.93279 -23.82892 -23.20046 -21.66359 -21.17025 -19.71509 -19.12535 -18.99065 -18.20354 -17.72401 -17.02284 -16.84362 -16.54481 -16.27147 -16.12923 -15.81832 -15.64040 -15.47294 -15.28450 -15.21705 -14.87206 -14.69877 -14.35869 -14.29609 -14.11602 -14.01879 -13.84147 -13.50649 -13.27187 -12.98936 -12.64245 -12.45405 -12.32165 -12.13774 -12.11222 -12.01750 -11.76443 -11.32523 -11.25038 -10.93613 -10.87886 -10.40367 -9.76171 -9.43068 -8.92765 -8.49213 -6.21426 0.60975 0.62141 0.68462 1.16753 1.31119 1.35923 1.52167 1.92862 2.28703 2.29657 2.76537 3.01119 3.07863 3.17749 3.28956 3.73495 3.90953 3.94855 4.09344 4.18193 4.20300 4.33477 4.33732 4.35780 4.37690 4.44234 4.58913 4.61430 4.70597 4.81339 4.82544 4.91055 4.96800 5.01563 5.24622 5.27352 5.43287 5.57183 5.74724 5.81931 5.85240 5.93310 6.04502 6.05120 6.28319 6.38000 6.45245 6.85302 7.11356 7.60992 8.62584 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.023631 B = 0.001980 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.615773 B =14136.215967 C =14479.886527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.146 3.854 3 H 0.080 0.920 4 N -0.682 5.682 5 C 0.058 3.942 6 C 0.121 3.879 7 N -0.578 5.578 8 C 0.515 3.485 9 O -0.500 6.500 10 C 0.074 3.926 11 N -0.710 5.710 12 C 0.692 3.308 13 O -0.586 6.586 14 C -0.134 4.134 15 C -0.047 4.047 16 C -0.192 4.192 17 C 0.115 3.885 18 O -0.247 6.247 19 C -0.398 4.398 20 H 0.079 0.921 21 C 0.007 3.993 22 N -0.925 5.925 23 Si 0.973 3.027 24 H -0.267 1.267 25 H -0.267 1.267 26 H -0.263 1.263 27 C -0.237 4.237 28 C -0.074 4.074 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.352 0.648 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.157 0.843 38 H 0.159 0.841 39 H 0.454 0.546 40 H 0.151 0.849 41 H 0.127 0.873 42 H 0.284 0.716 43 H 0.105 0.895 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.887 7.135 -33.929 36.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.036 3.964 3 H 0.098 0.902 4 N -0.314 5.314 5 C -0.072 4.072 6 C -0.001 4.001 7 N -0.324 5.324 8 C 0.305 3.695 9 O -0.372 6.372 10 C -0.052 4.052 11 N -0.376 5.376 12 C 0.393 3.607 13 O -0.462 6.462 14 C -0.135 4.135 15 C -0.065 4.065 16 C -0.211 4.211 17 C 0.067 3.933 18 O -0.155 6.155 19 C -0.474 4.474 20 H 0.097 0.903 21 C -0.191 4.191 22 N -0.566 5.566 23 Si 0.795 3.205 24 H -0.192 1.192 25 H -0.191 1.191 26 H -0.187 1.187 27 C -0.256 4.256 28 C -0.092 4.092 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.172 0.828 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.125 0.875 37 H 0.174 0.826 38 H 0.176 0.824 39 H 0.301 0.699 40 H 0.169 0.831 41 H 0.145 0.855 42 H 0.094 0.906 43 H 0.123 0.877 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.195 6.649 -33.131 35.020 hybrid contribution -0.116 0.063 0.769 0.780 sum -9.311 6.712 -32.362 34.337 Atomic orbital electron populations 1.22414 0.94984 1.02984 1.02477 1.20135 0.93291 0.96430 0.86550 0.90169 1.60346 1.58444 1.09872 1.02754 1.22091 0.99654 0.95670 0.89825 1.21549 1.04681 0.91174 0.82692 1.46400 1.15504 1.41900 1.28621 1.21622 0.83184 0.82291 0.82413 1.90833 1.20703 1.51928 1.73728 1.22736 0.82827 1.00332 0.99351 1.45426 1.17259 1.46623 1.28281 1.16114 0.82761 0.79601 0.82256 1.91046 1.28458 1.69732 1.56969 1.19627 1.04698 0.93726 0.95427 1.20751 0.96097 0.93837 0.95852 1.20537 1.07965 1.00030 0.92607 1.19683 0.94441 0.91999 0.87196 1.83507 1.71546 1.36331 1.24100 1.20696 1.37834 0.91403 0.97510 0.90347 1.25303 0.94890 1.05001 0.93892 1.69732 1.39340 1.38001 1.09505 0.85191 0.79563 0.77886 0.77897 1.19163 1.19129 1.18679 1.21222 1.09410 0.94116 1.00846 1.20878 0.96516 0.99829 0.91978 0.92101 0.91510 0.91597 0.82798 0.93991 0.91941 0.88831 0.87531 0.82554 0.82395 0.69920 0.83142 0.85474 0.90620 0.87682 0.85116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 9.14 71.98 0.66 -2.45 16 2 C 0.15 3.24 2.78 44.17 0.12 3.36 16 3 H 0.08 1.81 7.66 -2.38 -0.02 1.80 16 4 N -0.68 -13.36 5.71 -495.45 -2.83 -16.19 16 5 C 0.06 1.01 5.81 86.30 0.50 1.52 16 6 C 0.12 1.94 5.96 86.38 0.52 2.46 16 7 N -0.58 -8.32 2.60 -773.12 -2.01 -10.33 16 8 C 0.52 5.60 8.32 87.94 0.73 6.33 16 9 O -0.50 -8.56 17.75 -2.88 -0.05 -8.61 16 10 C 0.07 0.04 7.97 85.76 0.68 0.73 16 11 N -0.71 -3.80 6.58 -480.31 -3.16 -6.96 16 12 C 0.69 11.12 8.62 179.44 1.55 12.66 16 13 O -0.59 -15.34 17.48 -3.83 -0.07 -15.41 16 14 C -0.13 -4.06 4.96 -19.83 -0.10 -4.16 16 15 C -0.05 -1.47 9.31 22.25 0.21 -1.26 16 16 C -0.19 -7.54 9.99 22.39 0.22 -7.32 16 17 C 0.12 5.59 6.65 22.58 0.15 5.74 16 18 O -0.25 -13.86 8.58 -22.65 -0.19 -14.06 16 19 C -0.40 -24.20 9.95 67.92 0.68 -23.52 16 20 H 0.08 5.01 5.44 -2.91 -0.02 4.99 16 21 C 0.01 0.42 5.49 84.83 0.47 0.89 16 22 N -0.92 -56.58 13.96 21.61 0.30 -56.28 16 23 Si 0.97 46.68 28.62 68.60 1.96 48.65 16 24 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.26 -12.55 7.11 99.48 0.71 -11.84 16 27 C -0.24 -10.83 9.17 22.39 0.21 -10.62 16 28 C -0.07 -2.65 9.66 22.25 0.21 -2.43 16 29 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.07 1.02 7.45 -2.39 -0.02 1.00 16 31 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 32 H 0.35 5.61 7.82 -89.69 -0.70 4.91 16 33 H 0.04 0.68 7.44 -2.39 -0.02 0.66 16 34 H 0.06 1.33 8.06 -2.39 -0.02 1.31 16 35 H 0.09 1.80 7.86 -2.39 -0.02 1.78 16 36 H 0.11 1.43 8.00 -2.39 -0.02 1.41 16 37 H 0.16 -0.74 8.14 -2.39 -0.02 -0.76 16 38 H 0.16 -0.81 8.14 -2.39 -0.02 -0.83 16 39 H 0.45 0.38 8.96 -92.70 -0.83 -0.45 16 40 H 0.15 3.51 7.25 -2.91 -0.02 3.49 16 41 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 42 H 0.28 15.93 8.31 -92.71 -0.77 15.15 16 43 H 0.11 5.30 5.64 -2.91 -0.02 5.28 16 44 H 0.13 4.01 8.03 -2.91 -0.02 3.98 16 Total: -1.00 -81.59 374.92 0.28 -81.31 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -0.47 Total: 15.95 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 6.80 Total: -18.07 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -7.70 Total: -89.76 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -0.31 Total: -38.08 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 1.96 Total: 48.65 kcal Total: -81.59 0.28 -81.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121020131.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.640 kcal (2) G-P(sol) polarization free energy of solvation -81.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds