Wall clock time and date at job start Tue Mar 31 2020 18:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47182 * 2 1 4 4 C 1.50702 * 109.46734 * 240.00343 * 2 1 3 5 5 H 1.08005 * 119.99973 * 239.99847 * 4 2 1 6 6 C 1.37880 * 120.00180 * 60.00038 * 4 2 1 7 7 N 1.31516 * 119.99514 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00208 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46785 * 59.99836 * 8 6 4 10 10 H 1.48496 * 109.47061 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46982 * 300.00339 * 8 6 4 12 12 N 1.46493 * 109.47221 * 120.00401 * 2 1 3 13 13 C 1.46501 * 119.99912 * 59.99708 * 12 2 1 14 14 C 1.34772 * 120.00266 * 239.99794 * 12 2 1 15 15 O 1.21281 * 119.99969 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00435 * 180.02562 * 14 12 2 17 17 H 1.09004 * 109.47523 * 54.99731 * 16 14 12 18 18 O 1.42903 * 109.47453 * 174.99868 * 16 14 12 19 19 C 1.53006 * 109.47053 * 295.00192 * 16 14 12 20 20 H 1.08993 * 109.46955 * 64.99976 * 19 16 14 21 21 O 1.42906 * 109.46752 * 304.99558 * 19 16 14 22 22 C 1.50698 * 109.47184 * 185.00135 * 19 16 14 23 23 N 1.30117 * 124.95011 * 305.02050 * 22 19 16 24 24 C 1.35777 * 109.64485 * 179.97438 * 23 22 19 25 25 C 1.39749 * 133.60502 * 180.02562 * 24 23 22 26 26 C 1.36595 * 119.88703 * 180.02562 * 25 24 23 27 27 C 1.38777 * 120.67131 * 359.97438 * 26 25 24 28 28 C 1.37853 * 120.45157 * 0.04671 * 27 26 25 29 29 C 1.38830 * 119.68541 * 359.95509 * 28 27 26 30 30 N 1.36032 * 124.95406 * 124.72076 * 22 19 16 31 31 H 0.97002 * 126.34575 * 359.97438 * 30 22 19 32 32 H 1.08998 * 109.47424 * 59.99183 * 1 2 3 33 33 H 1.08997 * 109.47182 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.46726 * 299.99621 * 1 2 3 35 35 H 0.97003 * 119.99372 * 180.02562 * 7 6 4 36 36 H 1.09002 * 109.47361 * 269.99508 * 13 12 2 37 37 H 1.09000 * 109.47219 * 29.99991 * 13 12 2 38 38 H 1.09009 * 109.47029 * 149.99963 * 13 12 2 39 39 H 0.96701 * 113.99620 * 60.00268 * 18 16 14 40 40 H 0.96696 * 113.99911 * 300.00276 * 21 19 16 41 41 H 1.08000 * 120.05285 * 359.97438 * 25 24 23 42 42 H 1.07997 * 119.66520 * 179.97438 * 26 25 24 43 43 H 1.08002 * 119.77602 * 180.02562 * 27 26 25 44 44 H 1.07992 * 120.15652 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3223 -1.1193 -4.0081 9 1 1.8278 -2.5196 -4.0083 10 1 1.8266 -0.4196 -5.2205 11 1 3.8073 -1.1188 -4.0079 12 7 2.0184 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4278 14 6 2.7932 -0.0358 2.0832 15 8 3.0859 1.1255 1.8916 16 6 3.2961 -0.7464 3.3134 17 1 3.8268 -1.6517 3.0186 18 8 4.1834 0.1136 4.0311 19 6 2.1115 -1.1181 4.2077 20 1 1.4813 -1.8434 3.6930 21 8 1.3483 0.0545 4.4990 22 6 2.6211 -1.7178 5.4928 23 7 3.4253 -2.7376 5.5721 24 6 3.6831 -3.0154 6.8759 25 6 4.4619 -3.9806 7.5200 26 6 4.5226 -4.0066 8.8844 27 6 3.8177 -3.0820 9.6421 28 6 3.0427 -2.1213 9.0284 29 6 2.9689 -2.0795 7.6427 30 7 2.3120 -1.2684 6.7390 31 1 1.7352 -0.5185 6.9530 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3633 0.5138 0.8901 35 1 0.7080 1.1610 -3.4843 36 1 0.7376 -2.1445 1.9993 37 1 1.5294 -2.5969 0.4706 38 1 2.4629 -2.5820 1.9861 39 1 3.7774 0.9405 4.3252 40 1 1.8469 0.7443 4.9578 41 1 5.0142 -4.7051 6.9400 42 1 5.1253 -4.7543 9.3784 43 1 3.8765 -3.1156 10.7200 44 1 2.4958 -1.4044 9.6227 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275229357.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:12 Heat of formation + Delta-G solvation = -79.053529 kcal Electronic energy + Delta-G solvation = -29063.030003 eV Core-core repulsion = 24980.459729 eV Total energy + Delta-G solvation = -4082.570274 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.27178 -41.40699 -39.15920 -37.96970 -37.34790 -36.56113 -34.91348 -34.19959 -32.31240 -31.11475 -30.91056 -29.33509 -27.79637 -27.29095 -26.10760 -23.43487 -23.06831 -22.94609 -21.93889 -20.51409 -19.37579 -18.93348 -18.72262 -18.38297 -17.90579 -17.76565 -17.08711 -16.85368 -16.34590 -15.94816 -15.81878 -15.41696 -15.20644 -14.94338 -14.80528 -14.54084 -14.31315 -14.23935 -13.91838 -13.53807 -13.22568 -13.07508 -12.88167 -12.84883 -12.75023 -12.73416 -12.61506 -12.52854 -12.35757 -12.18396 -12.12583 -11.77819 -11.53207 -11.19757 -11.02810 -10.60153 -10.43198 -9.40651 -9.34238 -9.11758 -8.14608 -6.30945 -0.05569 0.57049 1.41425 1.44373 1.44624 1.51643 1.71852 1.81182 2.20727 2.44944 2.59717 2.91616 3.01191 3.13600 3.19481 3.33820 3.56279 3.65539 3.92212 4.13503 4.20633 4.26839 4.38838 4.45215 4.48842 4.52272 4.66444 4.77191 4.87424 4.92623 5.01414 5.07166 5.13934 5.42728 5.47595 5.54898 5.55582 5.60365 5.66071 5.95154 6.01850 6.12879 6.16280 6.31009 6.37151 6.74273 6.76217 6.80629 7.22847 7.42308 8.89484 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.025731 B = 0.002669 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.929310 B =10489.574403 C =10881.443930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.263 3.737 3 H 0.010 0.990 4 C -0.541 4.541 5 H 0.062 0.938 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.963 3.037 9 H -0.262 1.262 10 H -0.284 1.284 11 H -0.279 1.279 12 N -0.588 5.588 13 C 0.066 3.934 14 C 0.481 3.519 15 O -0.589 6.589 16 C 0.089 3.911 17 H 0.143 0.857 18 O -0.537 6.537 19 C 0.172 3.828 20 H 0.154 0.846 21 O -0.542 6.542 22 C 0.259 3.741 23 N -0.505 5.505 24 C 0.011 3.989 25 C -0.085 4.085 26 C -0.124 4.124 27 C -0.097 4.097 28 C -0.117 4.117 29 C 0.037 3.963 30 N -0.578 5.578 31 H 0.436 0.564 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.022 0.978 35 H 0.264 0.736 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.385 0.615 40 H 0.390 0.610 41 H 0.131 0.869 42 H 0.157 0.843 43 H 0.163 0.837 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.492 -9.137 25.751 27.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.161 3.839 3 H 0.027 0.973 4 C -0.580 4.580 5 H 0.080 0.920 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.788 3.212 9 H -0.186 1.186 10 H -0.210 1.210 11 H -0.204 1.204 12 N -0.318 5.318 13 C -0.076 4.076 14 C 0.268 3.732 15 O -0.471 6.471 16 C 0.024 3.976 17 H 0.160 0.840 18 O -0.342 6.342 19 C 0.110 3.890 20 H 0.171 0.829 21 O -0.348 6.348 22 C -0.010 4.010 23 N -0.227 5.227 24 C -0.107 4.107 25 C -0.105 4.105 26 C -0.144 4.144 27 C -0.117 4.117 28 C -0.137 4.137 29 C -0.073 4.073 30 N -0.191 5.191 31 H 0.278 0.722 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.235 0.765 40 H 0.240 0.760 41 H 0.149 0.851 42 H 0.174 0.826 43 H 0.181 0.819 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.846 -9.720 24.427 26.354 hybrid contribution -0.273 1.504 -0.353 1.569 sum 1.573 -8.216 24.073 25.486 Atomic orbital electron populations 1.21847 0.96858 1.00185 0.99987 1.18550 0.91773 0.92163 0.81425 0.97251 1.21572 1.32025 1.13215 0.91170 0.91967 1.25714 0.95058 0.95635 1.01969 1.70016 1.37171 1.23814 1.24483 0.85537 0.78353 0.79072 0.78229 1.18623 1.20955 1.20417 1.48192 1.48139 1.13199 1.22319 1.22092 1.01253 0.80736 1.03509 1.21550 0.78674 0.87177 0.85805 1.90642 1.59545 1.19012 1.77881 1.22431 0.92116 0.94658 0.88353 0.84008 1.86671 1.39560 1.34177 1.73819 1.21108 0.92358 0.88314 0.87258 0.82919 1.86776 1.40145 1.26919 1.80944 1.23773 0.95886 0.93644 0.87673 1.70222 1.16641 1.15614 1.20203 1.19522 1.02569 0.99688 0.88888 1.20316 0.97941 0.96975 0.95236 1.21045 1.00582 1.00408 0.92326 1.21368 0.95227 0.93533 1.01536 1.20367 1.02563 1.01885 0.88917 1.19224 0.99494 0.95247 0.93377 1.42745 1.42236 1.29475 1.04598 0.72186 0.91481 0.93410 0.95938 0.92637 0.90783 0.90379 0.89468 0.76500 0.75956 0.85128 0.82556 0.81906 0.83433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.20 8.97 71.98 0.65 -5.56 16 2 C 0.26 13.54 2.64 44.25 0.12 13.65 16 3 H 0.01 0.59 6.90 -2.39 -0.02 0.57 16 4 C -0.54 -29.28 7.99 25.60 0.20 -29.07 16 5 H 0.06 3.25 7.33 -2.91 -0.02 3.23 16 6 C 0.02 0.88 5.30 84.66 0.45 1.33 16 7 N -0.92 -52.70 11.32 21.45 0.24 -52.45 16 8 Si 0.96 43.10 29.54 68.60 2.03 45.13 16 9 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 N -0.59 -24.17 2.75 -826.80 -2.28 -26.44 16 13 C 0.07 2.02 7.91 127.77 1.01 3.04 16 14 C 0.48 19.24 6.60 87.66 0.58 19.82 16 15 O -0.59 -28.98 15.65 15.96 0.25 -28.73 16 16 C 0.09 2.59 2.45 29.85 0.07 2.66 16 17 H 0.14 4.10 7.13 -2.39 -0.02 4.09 16 18 O -0.54 -15.70 12.47 -125.59 -1.57 -17.27 16 19 C 0.17 3.97 3.15 29.85 0.09 4.06 16 20 H 0.15 3.39 5.23 -2.39 -0.01 3.37 16 21 O -0.54 -11.58 12.29 -144.35 -1.77 -13.35 16 22 C 0.26 5.99 6.68 137.92 0.92 6.91 16 23 N -0.50 -13.90 11.21 -179.97 -2.02 -15.92 16 24 C 0.01 0.28 7.23 39.45 0.29 0.57 16 25 C -0.09 -1.71 10.05 22.25 0.22 -1.49 16 26 C -0.12 -1.68 9.96 22.01 0.22 -1.46 16 27 C -0.10 -1.13 10.03 22.31 0.22 -0.90 16 28 C -0.12 -1.66 10.07 22.32 0.22 -1.44 16 29 C 0.04 0.75 7.30 38.86 0.28 1.03 16 30 N -0.58 -10.53 6.05 -179.23 -1.08 -11.61 16 31 H 0.44 5.19 8.49 -92.71 -0.79 4.40 16 32 H 0.07 3.57 6.07 -2.39 -0.01 3.55 16 33 H 0.05 2.05 7.67 -2.39 -0.02 2.03 16 34 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.26 14.47 8.31 -92.71 -0.77 13.69 16 36 H 0.07 1.90 7.11 -2.39 -0.02 1.88 16 37 H 0.08 2.58 7.02 -2.39 -0.02 2.56 16 38 H 0.09 2.14 6.03 -2.38 -0.01 2.13 16 39 H 0.39 8.97 7.58 -74.06 -0.56 8.41 16 40 H 0.39 5.63 7.74 -74.06 -0.57 5.06 16 41 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 42 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 43 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 44 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -78.47 361.91 -1.48 -79.95 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: -0.83 Total: 27.55 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 5.55 Total: 13.14 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -5.13 Total: -106.42 kcal Atomic # 8 Polarization: -56.26 SS G_CDS: -3.09 Total: -59.35 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -78.47 -1.48 -79.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275229357.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.893 kcal (2) G-P(sol) polarization free energy of solvation -78.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds