Wall clock time and date at job start Tue Mar 31 2020 18:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47028 * 2 1 4 4 C 1.52997 * 109.47086 * 240.00364 * 2 1 3 5 5 N 1.46500 * 109.47215 * 184.99680 * 4 2 1 6 6 C 1.46768 * 124.34703 * 89.99527 * 5 4 2 7 7 C 1.54483 * 105.47321 * 197.01907 * 6 5 4 8 8 C 1.54626 * 101.76540 * 334.58578 * 7 6 5 9 9 C 1.34415 * 124.35340 * 269.70314 * 5 4 2 10 10 O 1.21282 * 124.94076 * 359.56473 * 9 5 4 11 11 N 1.46497 * 109.47410 * 120.00258 * 2 1 3 12 12 S 1.65604 * 119.99842 * 265.00180 * 11 2 1 13 13 O 1.42103 * 106.40360 * 311.46040 * 12 11 2 14 14 O 1.42101 * 106.40002 * 178.53769 * 12 11 2 15 15 N 1.65603 * 107.21689 * 64.99780 * 12 11 2 16 16 C 1.46499 * 119.99954 * 269.99863 * 15 12 11 17 17 C 1.46506 * 120.00110 * 90.00259 * 15 12 11 18 18 H 1.08998 * 109.46566 * 359.97438 * 17 15 12 19 19 C 1.52997 * 109.47289 * 119.99604 * 17 15 12 20 20 C 1.50697 * 109.47015 * 240.00062 * 17 15 12 21 21 H 1.07998 * 120.00039 * 359.97438 * 20 17 15 22 22 C 1.37880 * 119.99815 * 179.97438 * 20 17 15 23 23 N 1.31517 * 119.99524 * 179.97438 * 22 20 17 24 24 Si 1.86794 * 120.00267 * 359.97438 * 22 20 17 25 25 H 1.48506 * 109.46589 * 89.99875 * 24 22 20 26 26 H 1.48490 * 109.47303 * 209.99928 * 24 22 20 27 27 H 1.48497 * 109.46869 * 330.00523 * 24 22 20 28 28 H 1.08994 * 109.47377 * 59.99804 * 1 2 3 29 29 H 1.09004 * 109.46571 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47353 * 299.99470 * 1 2 3 31 31 H 1.09004 * 109.47496 * 304.99592 * 4 2 1 32 32 H 1.08998 * 109.47345 * 64.99690 * 4 2 1 33 33 H 1.08998 * 110.24917 * 316.02188 * 6 5 4 34 34 H 1.09003 * 110.24332 * 77.93673 * 6 5 4 35 35 H 1.08997 * 110.97117 * 92.70539 * 7 6 5 36 36 H 1.09001 * 110.96719 * 216.46792 * 7 6 5 37 37 H 1.08999 * 110.48533 * 143.47581 * 8 7 6 38 38 H 1.08999 * 110.48612 * 265.98913 * 8 7 6 39 39 H 0.96995 * 120.00278 * 84.99460 * 11 2 1 40 40 H 1.09000 * 109.46842 * 270.00029 * 16 15 12 41 41 H 1.08994 * 109.47173 * 30.00563 * 16 15 12 42 42 H 1.08998 * 109.46730 * 150.00596 * 16 15 12 43 43 H 1.09002 * 109.47153 * 179.97438 * 19 17 15 44 44 H 1.09001 * 109.46832 * 60.00146 * 19 17 15 45 45 H 1.09004 * 109.47261 * 300.00128 * 19 17 15 46 46 H 0.97001 * 119.99599 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8262 -1.1907 6 6 4.2258 -1.9486 -0.5844 7 6 5.6665 -1.4367 -0.3635 8 6 5.7780 -0.3338 -1.4415 9 6 4.3471 0.0901 -1.6902 10 8 4.0129 1.1097 -2.2556 11 7 2.0184 -0.6906 1.1961 12 16 2.4122 0.1772 2.5505 13 8 3.2436 1.2444 2.1156 14 8 2.8125 -0.7698 3.5314 15 7 1.0168 0.8703 3.1115 16 6 0.6185 2.1992 2.6409 17 6 0.1807 0.1545 4.0784 18 1 0.6344 -0.8097 4.3074 19 6 0.0628 0.9807 5.3608 20 6 -1.1908 -0.0626 3.4928 21 1 -1.4171 0.2969 2.4999 22 6 -2.1566 -0.7204 4.2247 23 7 -3.3536 -0.9094 3.7137 24 14 -1.7650 -1.3429 5.9417 25 1 -2.0842 -0.2868 6.9358 26 1 -2.5772 -2.5528 6.2268 27 1 -0.3222 -1.6836 6.0275 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.6055 -1.7198 -1.2953 32 1 1.7516 -0.1582 -2.1370 33 1 3.7719 -2.2207 0.3685 34 1 4.2277 -2.8049 -1.2589 35 1 5.7828 -1.0182 0.6362 36 1 6.3935 -2.2295 -0.5399 37 1 6.3680 0.5041 -1.0704 38 1 6.2189 -0.7353 -2.3539 39 1 2.1110 -1.6562 1.1948 40 1 1.0439 2.9593 3.2963 41 1 0.9837 2.3495 1.6251 42 1 -0.4686 2.2776 2.6515 43 1 -0.5597 0.4483 6.0800 44 1 -0.3912 1.9447 5.1314 45 1 1.0548 1.1377 5.7843 46 1 -4.0330 -1.3725 4.2285 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330417261.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:02 Heat of formation + Delta-G solvation = -100.209028 kcal Electronic energy + Delta-G solvation = -29388.228104 eV Core-core repulsion = 25440.184410 eV Total energy + Delta-G solvation = -3948.043694 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.45940 -37.12212 -36.74480 -36.45232 -35.91847 -35.39118 -32.56235 -32.32032 -30.11351 -29.78927 -27.66090 -26.21373 -25.75417 -25.06735 -22.09307 -21.62251 -20.96081 -19.52117 -19.02578 -17.52291 -17.16588 -16.84662 -16.64031 -16.45424 -15.96883 -15.47957 -14.91567 -14.53973 -14.02466 -13.98983 -13.73248 -13.65509 -13.36449 -13.12736 -12.94836 -12.74596 -12.53840 -12.38652 -12.22565 -12.15459 -11.95901 -11.75267 -11.66231 -11.59851 -11.52740 -11.26109 -11.23540 -11.20565 -11.03477 -10.94993 -10.54523 -10.16784 -9.84082 -9.65384 -9.45290 -9.39153 -8.69998 -8.67100 -8.13335 -6.21010 -4.22055 1.12284 2.56051 2.93038 3.19955 3.32374 3.33411 3.36411 4.00292 4.22499 4.29399 4.31121 4.62157 4.76939 4.85285 4.88152 5.00505 5.11259 5.26026 5.32877 5.37969 5.41833 5.51762 5.54457 5.61246 5.65469 5.73407 5.81428 6.04621 6.09901 6.16036 6.21455 6.34395 6.38763 6.42186 6.50390 6.61555 6.73739 6.82673 7.04505 7.13871 7.27092 7.38108 7.60053 8.14370 8.38021 8.82113 9.40222 10.90761 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.019237 B = 0.004207 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.144545 B = 6653.937584 C = 6943.891211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.136 3.864 3 H 0.089 0.911 4 C 0.123 3.877 5 N -0.613 5.613 6 C 0.099 3.901 7 C -0.135 4.135 8 C -0.155 4.155 9 C 0.518 3.482 10 O -0.533 6.533 11 N -1.118 6.118 12 S 2.782 3.218 13 O -0.991 6.991 14 O -0.987 6.987 15 N -0.984 5.984 16 C 0.102 3.898 17 C 0.240 3.760 18 H 0.056 0.944 19 C -0.159 4.159 20 C -0.527 4.527 21 H 0.088 0.912 22 C 0.077 3.923 23 N -0.893 5.893 24 Si 0.876 3.124 25 H -0.277 1.277 26 H -0.295 1.295 27 H -0.262 1.262 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.409 0.591 40 H 0.044 0.956 41 H 0.053 0.947 42 H 0.085 0.915 43 H 0.048 0.952 44 H 0.058 0.942 45 H 0.033 0.967 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.033 -2.430 -8.934 15.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.027 3.973 3 H 0.107 0.893 4 C 0.000 4.000 5 N -0.347 5.347 6 C -0.025 4.025 7 C -0.173 4.173 8 C -0.195 4.195 9 C 0.306 3.694 10 O -0.410 6.410 11 N -0.877 5.877 12 S 2.791 3.209 13 O -0.974 6.974 14 O -0.971 6.971 15 N -0.825 5.825 16 C -0.045 4.045 17 C 0.135 3.865 18 H 0.073 0.927 19 C -0.218 4.218 20 C -0.566 4.566 21 H 0.106 0.894 22 C -0.126 4.126 23 N -0.530 5.530 24 Si 0.706 3.294 25 H -0.204 1.204 26 H -0.223 1.223 27 H -0.187 1.187 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.242 0.758 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.104 0.896 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.052 0.948 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.456 -1.665 -8.842 16.187 hybrid contribution -0.500 -0.920 0.958 1.419 sum 12.956 -2.584 -7.885 15.385 Atomic orbital electron populations 1.22409 0.93309 1.03901 1.03841 1.21202 0.95021 0.96610 0.84464 0.89264 1.21745 0.78057 1.01989 0.98216 1.48175 1.06067 1.22230 1.58224 1.22162 0.92227 0.89212 0.98852 1.22623 0.96127 0.98633 0.99944 1.22317 0.95451 1.00834 1.00922 1.20886 0.88593 0.82592 0.77375 1.90717 1.82162 1.25011 1.43060 1.56067 1.83732 1.19358 1.28575 1.01800 0.73514 0.73067 0.72554 1.93575 1.65342 1.55848 1.82639 1.93580 1.81899 1.63214 1.58395 1.57443 1.42581 1.26466 1.56048 1.21301 1.02918 0.82881 0.97361 1.19075 0.91726 0.90734 0.84981 0.92683 1.22417 0.99139 1.01502 0.98713 1.21250 0.93666 1.37827 1.03839 0.89442 1.24874 0.94810 0.95210 0.97741 1.69869 1.03436 1.41849 1.37837 0.87036 0.78997 0.78002 0.85377 1.20359 1.22260 1.18723 0.92058 0.91500 0.89324 0.89516 0.88781 0.90312 0.90852 0.89822 0.89057 0.87987 0.88026 0.75771 0.93709 0.92866 0.89587 0.93336 0.92258 0.94805 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 9.52 37.16 0.35 -2.08 16 2 C 0.14 1.83 3.24 -67.93 -0.22 1.61 16 3 H 0.09 1.36 7.06 -51.93 -0.37 0.99 16 4 C 0.12 1.38 5.56 -4.04 -0.02 1.35 16 5 N -0.61 -7.03 2.75 -172.41 -0.47 -7.51 16 6 C 0.10 0.85 7.10 -3.12 -0.02 0.83 16 7 C -0.14 -1.07 7.18 -25.10 -0.18 -1.25 16 8 C -0.16 -1.45 6.86 -26.74 -0.18 -1.64 16 9 C 0.52 6.98 8.02 -10.86 -0.09 6.90 16 10 O -0.53 -9.29 17.59 5.56 0.10 -9.19 16 11 N -1.12 -16.23 4.67 -4.89 -0.02 -16.25 16 12 S 2.78 50.92 6.08 -107.50 -0.65 50.27 16 13 O -0.99 -19.57 16.55 -57.17 -0.95 -20.52 16 14 O -0.99 -20.55 16.70 -57.17 -0.95 -21.50 16 15 N -0.98 -18.93 2.79 -115.86 -0.32 -19.25 16 16 C 0.10 1.73 8.14 59.85 0.49 2.22 16 17 C 0.24 5.32 2.21 -69.08 -0.15 5.17 16 18 H 0.06 1.30 5.97 -51.93 -0.31 1.00 16 19 C -0.16 -3.35 8.68 37.16 0.32 -3.02 16 20 C -0.53 -13.05 8.57 -34.44 -0.30 -13.34 16 21 H 0.09 2.25 5.83 -52.49 -0.31 1.94 16 22 C 0.08 2.03 5.45 -17.82 -0.10 1.93 16 23 N -0.89 -25.08 13.96 55.43 0.77 -24.31 16 24 Si 0.88 20.70 24.38 -169.99 -4.14 16.55 16 25 H -0.28 -6.39 6.87 56.52 0.39 -6.00 16 26 H -0.30 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.26 -6.09 6.53 56.52 0.37 -5.73 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.47 4.85 -51.93 -0.25 1.22 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.05 7.92 -51.93 -0.41 0.64 16 33 H 0.08 0.69 6.21 -51.93 -0.32 0.36 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.41 5.09 7.37 -34.47 -0.25 4.83 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.82 7.35 -51.93 -0.38 0.43 16 42 H 0.09 1.51 7.02 -51.93 -0.36 1.14 16 43 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16 44 H 0.06 1.17 7.67 -51.93 -0.40 0.78 16 45 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 366.74 15.07 5.53 5.53 Total: -1.00 -33.75 366.74 -8.16 -41.92 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.95 Total: 5.60 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -0.10 Total: -1.33 kcal Atomic # 7 Polarization: -67.27 SS G_CDS: -0.05 Total: -67.32 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -1.80 Total: -51.22 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.14 Total: 16.55 kcal Atomic # 16 Polarization: 50.92 SS G_CDS: -0.65 Total: 50.27 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.75 -8.16 -41.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330417261.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.294 kcal (2) G-P(sol) polarization free energy of solvation -33.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds