Wall clock time and date at job start Tue Mar 31 2020 18:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47028 * 2 1 4 4 C 1.52997 * 109.47086 * 240.00364 * 2 1 3 5 5 N 1.46500 * 109.47215 * 184.99680 * 4 2 1 6 6 C 1.46768 * 124.34703 * 89.99527 * 5 4 2 7 7 C 1.54483 * 105.47321 * 197.01907 * 6 5 4 8 8 C 1.54626 * 101.76540 * 334.58578 * 7 6 5 9 9 C 1.34415 * 124.35340 * 269.70314 * 5 4 2 10 10 O 1.21282 * 124.94076 * 359.56473 * 9 5 4 11 11 N 1.46497 * 109.47410 * 120.00258 * 2 1 3 12 12 S 1.65604 * 119.99842 * 265.00180 * 11 2 1 13 13 O 1.42103 * 106.40360 * 311.46040 * 12 11 2 14 14 O 1.42101 * 106.40002 * 178.53769 * 12 11 2 15 15 N 1.65603 * 107.21689 * 64.99780 * 12 11 2 16 16 C 1.46499 * 119.99954 * 269.99863 * 15 12 11 17 17 C 1.46506 * 120.00110 * 90.00259 * 15 12 11 18 18 H 1.08998 * 109.46566 * 359.97438 * 17 15 12 19 19 C 1.52997 * 109.47289 * 119.99604 * 17 15 12 20 20 C 1.50697 * 109.47015 * 240.00062 * 17 15 12 21 21 H 1.07998 * 120.00039 * 359.97438 * 20 17 15 22 22 C 1.37880 * 119.99815 * 179.97438 * 20 17 15 23 23 N 1.31517 * 119.99524 * 179.97438 * 22 20 17 24 24 Si 1.86794 * 120.00267 * 359.97438 * 22 20 17 25 25 H 1.48506 * 109.46589 * 89.99875 * 24 22 20 26 26 H 1.48490 * 109.47303 * 209.99928 * 24 22 20 27 27 H 1.48497 * 109.46869 * 330.00523 * 24 22 20 28 28 H 1.08994 * 109.47377 * 59.99804 * 1 2 3 29 29 H 1.09004 * 109.46571 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47353 * 299.99470 * 1 2 3 31 31 H 1.09004 * 109.47496 * 304.99592 * 4 2 1 32 32 H 1.08998 * 109.47345 * 64.99690 * 4 2 1 33 33 H 1.08998 * 110.24917 * 316.02188 * 6 5 4 34 34 H 1.09003 * 110.24332 * 77.93673 * 6 5 4 35 35 H 1.08997 * 110.97117 * 92.70539 * 7 6 5 36 36 H 1.09001 * 110.96719 * 216.46792 * 7 6 5 37 37 H 1.08999 * 110.48533 * 143.47581 * 8 7 6 38 38 H 1.08999 * 110.48612 * 265.98913 * 8 7 6 39 39 H 0.96995 * 120.00278 * 84.99460 * 11 2 1 40 40 H 1.09000 * 109.46842 * 270.00029 * 16 15 12 41 41 H 1.08994 * 109.47173 * 30.00563 * 16 15 12 42 42 H 1.08998 * 109.46730 * 150.00596 * 16 15 12 43 43 H 1.09002 * 109.47153 * 179.97438 * 19 17 15 44 44 H 1.09001 * 109.46832 * 60.00146 * 19 17 15 45 45 H 1.09004 * 109.47261 * 300.00128 * 19 17 15 46 46 H 0.97001 * 119.99599 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8262 -1.1907 6 6 4.2258 -1.9486 -0.5844 7 6 5.6665 -1.4367 -0.3635 8 6 5.7780 -0.3338 -1.4415 9 6 4.3471 0.0901 -1.6902 10 8 4.0129 1.1097 -2.2556 11 7 2.0184 -0.6906 1.1961 12 16 2.4122 0.1772 2.5505 13 8 3.2436 1.2444 2.1156 14 8 2.8125 -0.7698 3.5314 15 7 1.0168 0.8703 3.1115 16 6 0.6185 2.1992 2.6409 17 6 0.1807 0.1545 4.0784 18 1 0.6344 -0.8097 4.3074 19 6 0.0628 0.9807 5.3608 20 6 -1.1908 -0.0626 3.4928 21 1 -1.4171 0.2969 2.4999 22 6 -2.1566 -0.7204 4.2247 23 7 -3.3536 -0.9094 3.7137 24 14 -1.7650 -1.3429 5.9417 25 1 -2.0842 -0.2868 6.9358 26 1 -2.5772 -2.5528 6.2268 27 1 -0.3222 -1.6836 6.0275 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.6055 -1.7198 -1.2953 32 1 1.7516 -0.1582 -2.1370 33 1 3.7719 -2.2207 0.3685 34 1 4.2277 -2.8049 -1.2589 35 1 5.7828 -1.0182 0.6362 36 1 6.3935 -2.2295 -0.5399 37 1 6.3680 0.5041 -1.0704 38 1 6.2189 -0.7353 -2.3539 39 1 2.1110 -1.6562 1.1948 40 1 1.0439 2.9593 3.2963 41 1 0.9837 2.3495 1.6251 42 1 -0.4686 2.2776 2.6515 43 1 -0.5597 0.4483 6.0800 44 1 -0.3912 1.9447 5.1314 45 1 1.0548 1.1377 5.7843 46 1 -4.0330 -1.3725 4.2285 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330417261.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:01 Heat of formation + Delta-G solvation = -126.323738 kcal Electronic energy + Delta-G solvation = -29389.360522 eV Core-core repulsion = 25440.184410 eV Total energy + Delta-G solvation = -3949.176113 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.37344 -38.48482 -38.25255 -37.88413 -36.97893 -36.93973 -34.47856 -33.23294 -31.81451 -30.95467 -28.43999 -27.30771 -27.23986 -26.85183 -22.83928 -22.76087 -22.64772 -20.50417 -20.43351 -19.09759 -18.64137 -18.35740 -17.77066 -17.49030 -17.25107 -16.92870 -16.40595 -15.77390 -15.36267 -15.03654 -14.97493 -14.87365 -14.64930 -14.59981 -14.16877 -14.09780 -13.92430 -13.67898 -13.56736 -13.38811 -13.30686 -13.19527 -13.14676 -12.94572 -12.84531 -12.70462 -12.51887 -12.39067 -12.26529 -12.05134 -11.97068 -11.82665 -11.45294 -11.26875 -10.87122 -10.71859 -10.61309 -9.79700 -9.57720 -8.24313 -6.26478 -0.35023 1.32560 1.41494 1.47749 1.57241 1.88599 2.10331 2.34633 2.56001 3.10455 3.36657 3.45734 3.62930 3.72003 3.93049 3.99778 4.06639 4.19694 4.30546 4.34224 4.47048 4.57298 4.60321 4.61918 4.64824 4.68403 4.77303 4.79852 4.87084 4.88372 4.96880 5.05370 5.08479 5.18118 5.19484 5.23791 5.46124 5.50333 5.54646 5.61790 5.81735 6.10899 6.18717 6.39947 6.81410 7.16939 7.38200 8.89924 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.019237 B = 0.004207 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.144545 B = 6653.937584 C = 6943.891211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.140 3.860 3 H 0.070 0.930 4 C 0.124 3.876 5 N -0.613 5.613 6 C 0.089 3.911 7 C -0.131 4.131 8 C -0.151 4.151 9 C 0.500 3.500 10 O -0.585 6.585 11 N -1.107 6.107 12 S 2.796 3.204 13 O -1.005 7.005 14 O -1.010 7.010 15 N -0.989 5.989 16 C 0.099 3.901 17 C 0.242 3.758 18 H 0.044 0.956 19 C -0.161 4.161 20 C -0.511 4.511 21 H 0.072 0.928 22 C 0.031 3.969 23 N -0.934 5.934 24 Si 0.919 3.081 25 H -0.267 1.267 26 H -0.299 1.299 27 H -0.256 1.256 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.127 0.873 37 H 0.098 0.902 38 H 0.129 0.871 39 H 0.421 0.579 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.041 0.959 44 H 0.067 0.933 45 H 0.051 0.949 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.603 -3.558 -9.121 17.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.032 3.968 3 H 0.088 0.912 4 C 0.000 4.000 5 N -0.345 5.345 6 C -0.033 4.033 7 C -0.168 4.168 8 C -0.191 4.191 9 C 0.290 3.710 10 O -0.466 6.466 11 N -0.869 5.869 12 S 2.804 3.196 13 O -0.988 6.988 14 O -0.995 6.995 15 N -0.829 5.829 16 C -0.046 4.046 17 C 0.136 3.864 18 H 0.062 0.938 19 C -0.220 4.220 20 C -0.550 4.550 21 H 0.090 0.910 22 C -0.169 4.169 23 N -0.574 5.574 24 Si 0.748 3.252 25 H -0.193 1.193 26 H -0.227 1.227 27 H -0.180 1.180 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.133 0.867 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.146 0.854 37 H 0.116 0.884 38 H 0.146 0.854 39 H 0.257 0.743 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.060 0.940 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.051 -2.814 -9.001 17.761 hybrid contribution -0.963 -0.550 0.919 1.441 sum 14.087 -3.364 -8.082 16.586 Atomic orbital electron populations 1.22324 0.93484 1.03718 1.03359 1.21212 0.94710 0.95964 0.84955 0.91158 1.21762 0.78405 1.03224 0.96586 1.48357 1.06119 1.22605 1.57437 1.22477 0.92198 0.89153 0.99430 1.22692 0.96628 0.98992 0.98510 1.22369 0.92731 1.01302 1.02657 1.21683 0.90585 0.82084 0.76695 1.90678 1.83271 1.27162 1.45482 1.55751 1.83451 1.19942 1.27787 1.01266 0.73101 0.72603 0.72613 1.93560 1.65756 1.56670 1.82851 1.93542 1.82385 1.63731 1.59815 1.57393 1.42210 1.27217 1.56118 1.21405 1.02535 0.82235 0.98458 1.18860 0.90472 0.90994 0.86080 0.93806 1.22393 1.00206 1.01547 0.97821 1.21443 0.94584 1.35932 1.03036 0.91020 1.25463 0.94773 0.95958 1.00672 1.69976 1.04478 1.43722 1.39237 0.86322 0.78958 0.77591 0.82371 1.19345 1.22722 1.18025 0.90273 0.91453 0.92074 0.86655 0.88830 0.90429 0.87642 0.91391 0.85449 0.88388 0.85351 0.74313 0.92383 0.91553 0.90422 0.94011 0.91384 0.93002 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.60 9.52 71.98 0.69 -3.92 16 2 C 0.14 3.65 3.24 44.99 0.15 3.79 16 3 H 0.07 2.14 7.06 -2.39 -0.02 2.12 16 4 C 0.12 2.56 5.56 86.38 0.48 3.04 16 5 N -0.61 -12.95 2.75 -817.97 -2.25 -15.20 16 6 C 0.09 1.28 7.10 86.83 0.62 1.89 16 7 C -0.13 -1.69 7.18 31.65 0.23 -1.46 16 8 C -0.15 -2.52 6.86 30.59 0.21 -2.31 16 9 C 0.50 13.03 8.02 87.90 0.71 13.74 16 10 O -0.59 -20.64 17.59 -3.03 -0.05 -20.69 16 11 N -1.11 -30.87 4.67 -169.40 -0.79 -31.66 16 12 S 2.80 99.90 6.08 -56.49 -0.34 99.56 16 13 O -1.00 -38.99 16.55 -128.00 -2.12 -41.11 16 14 O -1.01 -41.00 16.70 -128.00 -2.14 -43.14 16 15 N -0.99 -37.30 2.79 -520.46 -1.45 -38.75 16 16 C 0.10 3.31 8.14 127.77 1.04 4.35 16 17 C 0.24 10.52 2.21 44.24 0.10 10.61 16 18 H 0.04 2.03 5.97 -2.39 -0.01 2.02 16 19 C -0.16 -6.51 8.68 71.98 0.62 -5.88 16 20 C -0.51 -25.24 8.57 25.60 0.22 -25.02 16 21 H 0.07 3.73 5.83 -2.91 -0.02 3.72 16 22 C 0.03 1.61 5.45 84.65 0.46 2.07 16 23 N -0.93 -53.07 13.96 21.45 0.30 -52.78 16 24 Si 0.92 42.03 24.38 68.60 1.67 43.70 16 25 H -0.27 -11.73 6.87 99.48 0.68 -11.04 16 26 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 27 H -0.26 -11.32 6.53 99.48 0.65 -10.67 16 28 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.06 2.03 4.85 -2.39 -0.01 2.02 16 31 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.09 1.99 7.92 -2.39 -0.02 1.97 16 33 H 0.08 1.14 6.21 -2.39 -0.01 1.12 16 34 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.42 9.75 7.37 -96.75 -0.71 9.04 16 40 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.07 2.02 7.35 -2.39 -0.02 2.00 16 42 H 0.08 2.72 7.02 -2.39 -0.02 2.70 16 43 H 0.04 1.74 3.27 -2.39 -0.01 1.73 16 44 H 0.07 2.59 7.67 -2.39 -0.02 2.57 16 45 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 46 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -73.17 366.74 -1.45 -74.62 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.21 Total: 24.55 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 5.51 Total: 0.90 kcal Atomic # 7 Polarization: -134.19 SS G_CDS: -4.19 Total: -138.38 kcal Atomic # 8 Polarization: -100.63 SS G_CDS: -4.31 Total: -104.94 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.67 Total: 43.70 kcal Atomic # 16 Polarization: 99.90 SS G_CDS: -0.34 Total: 99.56 kcal Total: -73.17 -1.45 -74.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330417261.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.701 kcal (2) G-P(sol) polarization free energy of solvation -73.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds