Wall clock time and date at job start Tue Mar 31 2020 18:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46908 * 2 1 4 4 N 1.46489 * 109.47300 * 120.00561 * 2 1 3 5 5 C 1.34777 * 120.00108 * 274.99549 * 4 2 1 6 6 O 1.21592 * 119.99583 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00488 * 179.97438 * 5 4 2 8 8 C 1.46500 * 120.00108 * 180.02562 * 7 5 4 9 9 C 1.50705 * 109.46976 * 180.02562 * 8 7 5 10 10 O 1.21291 * 119.99962 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99995 * 180.02562 * 9 8 7 12 12 C 1.37099 * 120.00056 * 180.02562 * 11 9 8 13 13 H 1.08002 * 119.99878 * 0.02562 * 12 11 9 14 14 C 1.38953 * 119.99865 * 180.02562 * 12 11 9 15 15 N 1.31409 * 119.99739 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00018 * 359.97438 * 14 12 11 17 17 H 1.48507 * 109.47107 * 90.00257 * 16 14 12 18 18 H 1.48493 * 109.47367 * 209.99833 * 16 14 12 19 19 H 1.48504 * 109.47494 * 330.00196 * 16 14 12 20 20 C 1.53005 * 109.46842 * 240.00465 * 2 1 3 21 21 H 1.09003 * 110.85862 * 62.35478 * 20 2 1 22 22 C 1.54705 * 110.93904 * 298.62618 * 20 2 1 23 23 O 1.43771 * 102.95524 * 216.65728 * 22 20 2 24 24 C 1.36138 * 109.23445 * 27.64960 * 23 22 20 25 25 C 1.39286 * 129.89232 * 161.03536 * 24 23 22 26 26 C 1.37938 * 120.24269 * 179.53564 * 25 24 23 27 27 C 1.38285 * 120.34988 * 0.02562 * 26 25 24 28 28 C 1.38354 * 119.76644 * 0.19941 * 27 26 25 29 29 C 1.37742 * 119.97713 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.46907 * 305.52779 * 1 2 3 31 31 H 1.09003 * 109.47667 * 65.52286 * 1 2 3 32 32 H 1.09003 * 109.47254 * 185.52897 * 1 2 3 33 33 H 0.97001 * 120.00703 * 94.99742 * 4 2 1 34 34 H 0.97002 * 120.00047 * 0.02562 * 7 5 4 35 35 H 1.08998 * 109.47132 * 300.00014 * 8 7 5 36 36 H 1.08995 * 109.47034 * 60.00473 * 8 7 5 37 37 H 0.97003 * 119.99632 * 359.97438 * 11 9 8 38 38 H 0.97000 * 119.99746 * 179.97438 * 15 14 12 39 39 H 1.09001 * 110.74868 * 98.23771 * 22 20 2 40 40 H 1.09008 * 110.74969 * 335.07298 * 22 20 2 41 41 H 1.08002 * 119.88142 * 359.51979 * 25 24 23 42 42 H 1.08000 * 119.82367 * 179.97438 * 26 25 24 43 43 H 1.07996 * 120.11808 * 180.18005 * 27 26 25 44 44 H 1.07999 * 120.01205 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1472 -0.0184 2.3570 6 8 1.8576 1.1612 2.4118 7 7 2.5960 -0.6539 3.4575 8 6 2.7355 0.0768 4.7196 9 6 3.2521 -0.8553 5.7852 10 8 3.4817 -2.0156 5.5167 11 7 3.4590 -0.3996 7.0366 12 6 3.9296 -1.2474 8.0059 13 1 4.1348 -2.2804 7.7665 14 6 4.1424 -0.7776 9.2962 15 7 4.5938 -1.5902 10.2250 16 14 3.7881 1.0091 9.7099 17 1 2.3793 1.1431 10.1601 18 1 4.6988 1.4561 10.7943 19 1 4.0044 1.8488 8.5042 20 6 2.0400 -0.7212 -1.2494 21 1 1.7237 -0.2014 -2.1538 22 6 1.5716 -2.1955 -1.2666 23 8 2.6976 -2.8848 -1.8358 24 6 3.8354 -2.1907 -1.5583 25 6 5.1639 -2.6086 -1.5777 26 6 6.1752 -1.7238 -1.2663 27 6 5.8800 -0.4149 -0.9318 28 6 4.5626 0.0070 -0.9057 29 6 3.5510 -0.8759 -1.2129 30 1 -0.3633 0.5972 0.8364 31 1 -0.3634 0.4258 -0.9353 32 1 -0.3634 -1.0229 0.0990 33 1 2.2491 -1.6318 1.1525 34 1 2.8266 -1.5951 3.4140 35 1 3.4367 0.9006 4.5870 36 1 1.7648 0.4707 5.0206 37 1 3.2758 0.5285 7.2513 38 1 4.7428 -1.2621 11.1257 39 1 0.6888 -2.3129 -1.8952 40 1 1.3732 -2.5496 -0.2548 41 1 5.4031 -3.6294 -1.8372 42 1 7.2030 -2.0552 -1.2830 43 1 6.6749 0.2755 -0.6914 44 1 4.3275 1.0285 -0.6454 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376249868.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:15 Heat of formation + Delta-G solvation = -62.838139 kcal Electronic energy + Delta-G solvation = -28309.099799 eV Core-core repulsion = 24227.232677 eV Total energy + Delta-G solvation = -4081.867122 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.69667 -39.89240 -38.44469 -37.65481 -36.34722 -34.46685 -33.73131 -32.46299 -31.79360 -30.79926 -30.18815 -28.68098 -27.56624 -24.78539 -24.22236 -23.06126 -22.19759 -21.17051 -20.18506 -19.63687 -18.94048 -18.22074 -17.66603 -16.92476 -16.44200 -16.06871 -15.84715 -15.53236 -15.43467 -15.06384 -14.62956 -14.29779 -14.17122 -14.16527 -13.78521 -13.66536 -13.34608 -13.13713 -13.06320 -12.78965 -12.51899 -12.48458 -12.26144 -12.15587 -12.07376 -11.76719 -11.23982 -11.21428 -11.03764 -10.95505 -10.64388 -10.12591 -10.05904 -9.69821 -9.26886 -9.12849 -8.76656 -8.71910 -8.40402 -8.30438 -6.40871 -3.93420 1.04894 1.15600 2.69514 2.96485 2.99545 3.04219 3.12411 3.31366 3.48088 3.57833 3.93842 4.03390 4.16009 4.26603 4.36110 4.58770 4.61131 4.75050 4.85774 4.96665 5.07273 5.12233 5.14287 5.19157 5.20761 5.32111 5.39139 5.46080 5.63137 5.72730 5.78032 5.80374 5.85175 5.98072 6.08739 6.17313 6.27929 6.34676 6.44772 6.63608 6.92518 6.99009 7.44998 8.00284 8.14471 8.44459 8.71631 8.81778 9.29875 9.63751 10.71373 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015809 B = 0.002619 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.750140 B =10686.689226 C =11408.086829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.175 3.825 3 H 0.096 0.904 4 N -0.742 5.742 5 C 0.709 3.291 6 O -0.598 6.598 7 N -0.725 5.725 8 C 0.127 3.873 9 C 0.438 3.562 10 O -0.579 6.579 11 N -0.576 5.576 12 C -0.310 4.310 13 H 0.121 0.879 14 C 0.045 3.955 15 N -0.875 5.875 16 Si 0.879 3.121 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.267 1.267 20 C -0.085 4.085 21 H 0.111 0.889 22 C 0.053 3.947 23 O -0.303 6.303 24 C 0.102 3.898 25 C -0.139 4.139 26 C -0.083 4.083 27 C -0.146 4.146 28 C -0.060 4.060 29 C -0.165 4.165 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.394 0.606 34 H 0.407 0.593 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.374 0.626 38 H 0.275 0.725 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.127 0.873 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.207 3.629 -25.432 26.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.070 3.930 3 H 0.114 0.886 4 N -0.399 5.399 5 C 0.409 3.591 6 O -0.477 6.477 7 N -0.382 5.382 8 C -0.002 4.002 9 C 0.224 3.776 10 O -0.463 6.463 11 N -0.214 5.214 12 C -0.438 4.438 13 H 0.139 0.861 14 C -0.159 4.159 15 N -0.514 5.514 16 Si 0.705 3.295 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.192 1.192 20 C -0.104 4.104 21 H 0.129 0.871 22 C -0.022 4.022 23 O -0.217 6.217 24 C 0.057 3.943 25 C -0.157 4.157 26 C -0.101 4.101 27 C -0.164 4.164 28 C -0.078 4.078 29 C -0.166 4.166 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.228 0.772 34 H 0.245 0.755 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.208 0.792 38 H 0.086 0.914 39 H 0.128 0.872 40 H 0.097 0.903 41 H 0.145 0.855 42 H 0.149 0.851 43 H 0.145 0.855 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.283 3.686 -25.400 26.021 hybrid contribution -0.046 0.613 0.650 0.895 sum -4.329 4.299 -24.750 25.490 Atomic orbital electron populations 1.22265 0.94836 1.02558 1.02946 1.20566 0.93765 0.97064 0.81637 0.88619 1.45140 1.72311 1.13620 1.08780 1.15784 0.78270 0.84909 0.80171 1.90895 1.57741 1.14270 1.84792 1.44754 1.70276 1.14940 1.08226 1.20791 1.02088 0.94286 0.82998 1.19668 0.85357 0.88963 0.83585 1.90538 1.56761 1.18288 1.80723 1.42113 1.58729 1.11628 1.08951 1.19440 1.40571 0.95891 0.87946 0.86111 1.25063 0.96969 0.98428 0.95438 1.69618 1.43421 1.35337 1.03004 0.86670 0.79367 0.84261 0.79193 1.19396 1.19995 1.19199 1.21843 0.91620 0.97067 0.99850 0.87080 1.23944 0.88865 0.89537 0.99845 1.86851 1.13719 1.49185 1.71994 1.19556 0.88240 0.90033 0.96468 1.20270 0.88832 1.00822 1.05820 1.20906 0.98775 0.93127 0.97326 1.21076 0.96168 0.96473 1.02714 1.20324 0.91504 0.99133 0.96804 1.20637 0.94786 0.94280 1.06883 0.91201 0.91509 0.92297 0.77156 0.75535 0.89947 0.89913 0.79242 0.91392 0.87226 0.90324 0.85489 0.85141 0.85463 0.85882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 9.18 37.16 0.34 -0.99 16 2 C 0.18 1.61 2.36 -67.93 -0.16 1.45 16 3 H 0.10 1.03 7.58 -51.93 -0.39 0.63 16 4 N -0.74 -8.33 4.42 -58.68 -0.26 -8.59 16 5 C 0.71 10.70 8.53 -86.92 -0.74 9.96 16 6 O -0.60 -10.69 16.01 5.29 0.08 -10.61 16 7 N -0.72 -11.63 5.53 -66.41 -0.37 -12.00 16 8 C 0.13 2.21 6.15 -5.19 -0.03 2.18 16 9 C 0.44 9.64 7.85 -10.98 -0.09 9.56 16 10 O -0.58 -14.64 15.24 5.55 0.08 -14.56 16 11 N -0.58 -13.40 5.09 -10.96 -0.06 -13.46 16 12 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 13 H 0.12 3.79 7.39 -52.49 -0.39 3.41 16 14 C 0.05 1.21 5.50 -17.47 -0.10 1.12 16 15 N -0.87 -24.99 13.96 55.50 0.77 -24.22 16 16 Si 0.88 18.99 27.74 -169.99 -4.71 14.27 16 17 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 18 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 20 C -0.08 -0.66 3.07 -90.26 -0.28 -0.93 16 21 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 22 C 0.05 0.39 6.34 38.05 0.24 0.64 16 23 O -0.30 -3.13 11.11 -20.18 -0.22 -3.36 16 24 C 0.10 1.09 7.04 -38.95 -0.27 0.81 16 25 C -0.14 -1.38 10.06 -39.30 -0.40 -1.78 16 26 C -0.08 -0.76 10.02 -39.67 -0.40 -1.16 16 27 C -0.15 -1.39 10.07 -39.52 -0.40 -1.79 16 28 C -0.06 -0.60 9.93 -39.72 -0.39 -0.99 16 29 C -0.16 -1.63 5.13 -103.96 -0.53 -2.16 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.41 7.47 -51.93 -0.39 0.03 16 33 H 0.39 4.05 6.92 -40.82 -0.28 3.77 16 34 H 0.41 6.54 7.45 -40.82 -0.30 6.24 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.37 7.68 5.76 -40.82 -0.24 7.45 16 38 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.57 6.33 -51.92 -0.33 0.24 16 41 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 369.49 15.07 5.57 5.57 Total: -1.00 -33.65 369.49 -8.18 -41.83 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -5.72 Total: 17.91 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -3.36 Total: 7.20 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: 0.09 Total: -58.26 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.05 Total: -28.52 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.71 Total: 14.27 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.65 -8.18 -41.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376249868.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.006 kcal (2) G-P(sol) polarization free energy of solvation -33.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds