Wall clock time and date at job start Tue Mar 31 2020 18:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47188 * 2 1 4 4 O 1.42895 * 109.47249 * 120.00455 * 2 1 3 5 5 C 1.53005 * 109.46750 * 240.00222 * 2 1 3 6 6 H 1.09002 * 109.46978 * 304.71894 * 5 2 1 7 7 N 1.46496 * 109.47140 * 64.72195 * 5 2 1 8 8 C 1.34778 * 120.00106 * 274.99855 * 7 5 2 9 9 O 1.21281 * 119.99811 * 0.02562 * 8 7 5 10 10 C 1.50700 * 119.99908 * 180.02562 * 8 7 5 11 11 C 1.53000 * 117.49600 * 248.74915 * 10 8 7 12 12 C 1.52995 * 117.49832 * 180.09062 * 10 8 7 13 13 C 1.50697 * 109.47105 * 184.72340 * 5 2 1 14 14 O 1.21274 * 120.00106 * 269.22040 * 13 5 2 15 15 N 1.34784 * 119.99948 * 88.93980 * 13 5 2 16 16 C 1.39468 * 119.99588 * 176.77530 * 15 13 5 17 17 C 1.38598 * 119.58406 * 22.05268 * 16 15 13 18 18 C 1.40806 * 118.79941 * 179.75735 * 17 16 15 19 19 C 1.41539 * 120.99930 * 180.25975 * 18 17 16 20 20 H 1.08003 * 120.00259 * 208.94269 * 19 18 17 21 21 C 1.40036 * 120.00162 * 28.94217 * 19 18 17 22 22 N 1.30747 * 119.99772 * 11.68421 * 21 19 18 23 23 Si 1.86793 * 119.99966 * 191.68595 * 21 19 18 24 24 H 1.48500 * 109.47305 * 59.99747 * 23 21 19 25 25 H 1.48505 * 109.47153 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47278 * 299.99674 * 23 21 19 27 27 C 1.41179 * 118.00222 * 0.49438 * 18 17 16 28 28 C 1.37583 * 119.01832 * 359.76345 * 27 18 17 29 29 N 1.32087 * 121.11030 * 359.97222 * 28 27 18 30 30 H 1.08998 * 109.47188 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46756 * 299.99659 * 1 2 3 32 32 H 1.09000 * 109.47148 * 59.99623 * 1 2 3 33 33 H 0.96705 * 114.00246 * 188.56283 * 4 2 1 34 34 H 0.97007 * 119.99876 * 95.00039 * 7 5 2 35 35 H 1.09003 * 115.55247 * 34.41219 * 10 8 7 36 36 H 1.08993 * 117.50357 * 359.97438 * 11 10 8 37 37 H 1.09002 * 117.49743 * 145.02142 * 11 10 8 38 38 H 1.09008 * 117.49907 * 214.97849 * 12 10 8 39 39 H 1.08998 * 117.50071 * 359.96969 * 12 10 8 40 40 H 0.96991 * 119.99721 * 356.79122 * 15 13 5 41 41 H 1.08000 * 120.59907 * 0.02562 * 17 16 15 42 42 H 0.96994 * 119.99345 * 180.02562 * 22 21 19 43 43 H 1.08009 * 120.48596 * 179.78357 * 27 18 17 44 44 H 1.07999 * 119.44608 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0399 -0.7212 -1.2493 6 1 1.6092 -1.7216 -1.2926 7 7 1.6466 0.0319 -2.4427 8 6 0.4288 -0.1575 -2.9881 9 8 -0.3417 -0.9511 -2.4907 10 6 0.0244 0.6169 -4.2161 11 6 -1.0731 1.6709 -4.0569 12 6 -1.3717 0.3587 -4.7862 13 6 3.5424 -0.8234 -1.1923 14 8 4.2285 0.0495 -1.6802 15 7 4.1236 -1.8821 -0.5940 16 6 5.5123 -2.0108 -0.6001 17 6 6.3027 -0.8883 -0.7904 18 6 7.7029 -1.0363 -0.7883 19 6 8.5542 0.0794 -0.9730 20 1 9.5262 -0.0520 -1.4251 21 6 8.1361 1.3535 -0.5694 22 7 7.0714 1.4859 0.1778 23 14 9.0996 2.8637 -1.0985 24 1 9.1178 2.9450 -2.5812 25 1 8.4550 4.0814 -0.5443 26 1 10.4918 2.7656 -0.5911 27 6 8.2323 -2.3317 -0.6016 28 6 7.3673 -3.3871 -0.4258 29 7 6.0591 -3.2052 -0.4290 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 2.9611 -0.5996 1.3014 34 1 2.2628 0.6670 -2.8404 35 1 0.8260 0.8280 -4.9239 36 1 -1.5030 1.8040 -3.0642 37 1 -0.9938 2.5752 -4.6604 38 1 -1.4887 0.4001 -5.8692 39 1 -1.9975 -0.3717 -4.2734 40 1 3.5761 -2.5546 -0.1596 41 1 5.8527 0.0831 -0.9334 42 1 6.7817 2.3685 0.4570 43 1 9.3004 -2.4917 -0.5965 44 1 7.7648 -4.3811 -0.2828 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543714207.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:05 Heat of formation + Delta-G solvation = -78.308862 kcal Electronic energy + Delta-G solvation = -29086.351990 eV Core-core repulsion = 25003.814008 eV Total energy + Delta-G solvation = -4082.537983 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.17847 -40.99472 -39.77085 -38.40001 -37.10461 -36.34921 -35.70999 -35.37035 -32.50624 -32.12298 -30.85300 -28.75426 -27.85165 -25.28326 -24.18912 -23.51046 -23.28424 -22.46102 -21.53082 -21.20439 -19.88507 -19.15442 -18.76977 -18.08111 -17.79956 -17.36609 -17.04683 -16.52275 -16.34297 -16.09072 -15.80055 -15.72677 -15.40263 -15.07251 -14.80835 -14.49569 -14.42193 -14.28591 -13.93308 -13.60140 -13.30636 -13.19472 -13.00562 -12.95806 -12.71850 -12.54834 -12.41115 -12.29206 -11.97746 -11.62110 -11.58330 -11.52913 -11.45207 -11.16854 -10.98099 -10.76522 -10.20222 -10.04139 -9.85449 -8.96135 -8.65088 -6.56108 0.60195 0.99352 1.23739 1.37638 1.41612 1.49391 1.52768 1.66050 2.14394 2.18750 2.77970 2.91946 3.08349 3.23997 3.50896 3.64966 3.71589 3.81563 3.86509 4.00383 4.13755 4.20922 4.21899 4.31402 4.71006 4.74791 4.79583 4.80976 4.84439 4.89515 4.92175 5.00038 5.11713 5.12745 5.20678 5.24559 5.25694 5.46233 5.63964 5.95770 6.10672 6.31874 6.35369 6.39085 6.50327 6.81467 6.85807 7.00464 7.05411 7.60331 8.28487 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012118 B = 0.003556 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.113346 B = 7872.935275 C = 8844.261938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.104 3.896 3 H 0.066 0.934 4 O -0.564 6.564 5 C 0.118 3.882 6 H 0.116 0.884 7 N -0.703 5.703 8 C 0.544 3.456 9 O -0.560 6.560 10 C -0.208 4.208 11 C -0.139 4.139 12 C -0.145 4.145 13 C 0.503 3.497 14 O -0.527 6.527 15 N -0.632 5.632 16 C 0.312 3.688 17 C -0.240 4.240 18 C 0.103 3.897 19 C -0.489 4.489 20 H 0.083 0.917 21 C 0.037 3.963 22 N -0.810 5.810 23 Si 0.985 3.015 24 H -0.262 1.262 25 H -0.267 1.267 26 H -0.256 1.256 27 C -0.298 4.298 28 C 0.120 3.880 29 N -0.600 5.600 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.383 0.617 34 H 0.416 0.584 35 H 0.142 0.858 36 H 0.095 0.905 37 H 0.129 0.871 38 H 0.125 0.875 39 H 0.093 0.907 40 H 0.419 0.581 41 H 0.159 0.841 42 H 0.288 0.712 43 H 0.117 0.883 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.002 3.608 -5.756 15.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.043 3.957 3 H 0.084 0.916 4 O -0.369 6.369 5 C 0.008 3.992 6 H 0.134 0.866 7 N -0.358 5.358 8 C 0.333 3.667 9 O -0.439 6.439 10 C -0.229 4.229 11 C -0.176 4.176 12 C -0.182 4.182 13 C 0.289 3.711 14 O -0.402 6.402 15 N -0.279 5.279 16 C 0.089 3.911 17 C -0.264 4.264 18 C 0.094 3.906 19 C -0.519 4.519 20 H 0.101 0.899 21 C -0.180 4.180 22 N -0.435 5.435 23 Si 0.805 3.195 24 H -0.186 1.186 25 H -0.191 1.191 26 H -0.180 1.180 27 C -0.322 4.322 28 C -0.035 4.035 29 N -0.320 5.320 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.231 0.769 34 H 0.254 0.746 35 H 0.159 0.841 36 H 0.113 0.887 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.111 0.889 40 H 0.257 0.743 41 H 0.176 0.824 42 H 0.099 0.901 43 H 0.135 0.865 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.465 2.959 -5.428 16.655 hybrid contribution 2.060 1.038 -0.113 2.310 sum -13.405 3.997 -5.541 15.045 Atomic orbital electron populations 1.21738 0.90618 1.03322 1.02556 1.22154 0.96879 0.94654 0.82050 0.91597 1.86508 1.28934 1.77263 1.44209 1.21434 0.88922 0.99959 0.88871 0.86627 1.45658 1.17670 1.44118 1.28325 1.20206 0.80259 0.81846 0.84366 1.90703 1.52131 1.37207 1.63813 1.22237 0.96336 1.06273 0.98022 1.23084 0.97642 0.93807 1.03049 1.23047 0.93966 0.99513 1.01673 1.21000 0.90758 0.81383 0.77968 1.90700 1.64431 1.39326 1.45763 1.43077 1.04789 1.25602 1.54413 1.18297 0.83661 0.90339 0.98814 1.22829 0.93890 0.99737 1.09976 1.18250 0.92692 0.93220 0.86391 1.19837 1.02895 0.92248 1.36959 0.89889 1.26790 0.95720 1.03366 0.92116 1.69783 1.22111 1.26927 1.24701 0.85212 0.79011 0.75686 0.79591 1.18640 1.19116 1.17997 1.22156 1.00007 0.94572 1.15433 1.22153 0.87267 0.98787 0.95244 1.66770 1.14980 1.23232 1.27031 0.91979 0.91117 0.90786 0.76875 0.74590 0.84059 0.88700 0.85323 0.85733 0.88888 0.74324 0.82438 0.90121 0.86517 0.81777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.16 71.98 0.59 -2.44 16 2 C 0.10 2.75 3.40 30.60 0.10 2.85 16 3 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 4 O -0.56 -15.96 13.09 -148.98 -1.95 -17.91 16 5 C 0.12 3.31 2.43 44.25 0.11 3.41 16 6 H 0.12 3.26 7.58 -2.39 -0.02 3.24 16 7 N -0.70 -17.42 5.01 -446.10 -2.23 -19.66 16 8 C 0.54 12.83 6.17 87.66 0.54 13.37 16 9 O -0.56 -16.02 13.39 -3.03 -0.04 -16.06 16 10 C -0.21 -3.45 6.19 -11.54 -0.07 -3.52 16 11 C -0.14 -1.74 10.24 30.62 0.31 -1.42 16 12 C -0.14 -2.04 10.05 30.62 0.31 -1.73 16 13 C 0.50 17.95 6.05 87.65 0.53 18.48 16 14 O -0.53 -22.67 12.81 -3.01 -0.04 -22.71 16 15 N -0.63 -23.72 4.89 -308.66 -1.51 -25.23 16 16 C 0.31 14.71 7.49 132.75 0.99 15.71 16 17 C -0.24 -12.76 7.50 22.98 0.17 -12.59 16 18 C 0.10 5.58 5.56 -21.11 -0.12 5.46 16 19 C -0.49 -26.07 9.12 23.52 0.21 -25.86 16 20 H 0.08 4.20 7.87 -2.91 -0.02 4.18 16 21 C 0.04 1.85 5.26 85.29 0.45 2.30 16 22 N -0.81 -41.82 10.98 21.84 0.24 -41.58 16 23 Si 0.98 37.66 29.57 68.60 2.03 39.69 16 24 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 25 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 26 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 27 C -0.30 -14.39 9.90 22.84 0.23 -14.16 16 28 C 0.12 5.28 11.15 84.50 0.94 6.22 16 29 N -0.60 -27.63 10.36 -193.54 -2.01 -29.63 16 30 H 0.06 1.63 7.83 -2.39 -0.02 1.61 16 31 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.07 1.73 5.65 -2.39 -0.01 1.72 16 33 H 0.38 10.91 7.89 -74.05 -0.58 10.32 16 34 H 0.42 10.09 7.84 -92.70 -0.73 9.37 16 35 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.09 1.64 7.67 -2.39 -0.02 1.62 16 40 H 0.42 13.42 8.82 -92.72 -0.82 12.60 16 41 H 0.16 8.74 3.60 -4.83 -0.02 8.72 16 42 H 0.29 13.57 8.29 -92.71 -0.77 12.80 16 43 H 0.12 5.13 8.06 -2.91 -0.02 5.11 16 44 H 0.17 5.80 8.06 -2.91 -0.02 5.77 16 Total: -1.00 -66.80 368.10 -1.26 -68.06 By element: Atomic # 1 Polarization: 59.98 SS G_CDS: -1.05 Total: 58.93 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 5.30 Total: 6.08 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -5.51 Total: -116.10 kcal Atomic # 8 Polarization: -54.64 SS G_CDS: -2.03 Total: -56.67 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Total: -66.80 -1.26 -68.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543714207.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.247 kcal (2) G-P(sol) polarization free energy of solvation -66.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds