Wall clock time and date at job start Tue Mar 31 2020 18:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.46897 * 2 1 4 4 C 1.50703 * 109.47187 * 240.00468 * 2 1 3 5 5 H 1.08002 * 119.99649 * 239.99831 * 4 2 1 6 6 C 1.37872 * 120.00107 * 59.99484 * 4 2 1 7 7 N 1.31512 * 120.00104 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00032 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47315 * 60.00133 * 8 6 4 10 10 H 1.48502 * 109.47223 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46891 * 300.00147 * 8 6 4 12 12 N 1.46501 * 109.47247 * 120.00099 * 2 1 3 13 13 C 1.46499 * 119.99931 * 60.00456 * 12 2 1 14 14 C 1.34774 * 119.99908 * 239.99695 * 12 2 1 15 15 O 1.21282 * 120.00448 * 0.02562 * 14 12 2 16 16 C 1.50701 * 119.99827 * 179.97438 * 14 12 2 17 17 C 1.52998 * 109.46894 * 174.18604 * 16 14 12 18 18 H 1.08996 * 109.47286 * 54.28840 * 17 16 14 19 19 C 1.50693 * 109.47216 * 294.28370 * 17 16 14 20 20 N 1.30503 * 125.65261 * 299.96207 * 19 17 16 21 21 C 1.34124 * 109.25728 * 180.02562 * 20 19 17 22 22 C 1.34678 * 108.02224 * 0.02562 * 21 20 19 23 23 N 1.35050 * 125.64737 * 120.00069 * 19 17 16 24 24 C 1.46493 * 126.40028 * 359.70509 * 23 19 17 25 25 C 1.53008 * 109.46969 * 174.28732 * 17 16 14 26 26 F 1.39902 * 109.47091 * 177.50415 * 25 17 16 27 27 F 1.39898 * 109.46872 * 297.50029 * 25 17 16 28 28 F 1.39898 * 109.47020 * 57.50183 * 25 17 16 29 29 H 1.08998 * 109.47350 * 60.00035 * 1 2 3 30 30 H 1.09001 * 109.46692 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47205 * 299.99407 * 1 2 3 32 32 H 0.97001 * 120.00544 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.46813 * 270.00205 * 13 12 2 34 34 H 1.09005 * 109.47179 * 29.99300 * 13 12 2 35 35 H 1.08997 * 109.47454 * 150.00313 * 13 12 2 36 36 H 1.09002 * 109.46922 * 54.18670 * 16 14 12 37 37 H 1.09000 * 109.46966 * 294.18547 * 16 14 12 38 38 H 1.08001 * 125.99170 * 179.97438 * 21 20 19 39 39 H 1.08003 * 126.59136 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.47013 * 89.99504 * 24 23 19 41 41 H 1.08997 * 109.47594 * 209.99773 * 24 23 19 42 42 H 1.09007 * 109.46821 * 330.00236 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.8259 -2.5201 -4.0079 10 1 1.8269 -0.4197 -5.2205 11 1 3.8064 -1.1207 -4.0082 12 7 2.0184 -0.6906 1.1962 13 6 1.6646 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0833 15 8 3.0860 1.1256 1.8916 16 6 3.2952 -0.7459 3.3140 17 6 4.2611 0.1673 4.0715 18 1 3.7746 1.1209 4.2761 19 6 5.4924 0.4007 3.2346 20 7 6.3100 -0.5236 2.8100 21 6 7.2916 0.0479 2.0966 22 6 7.0744 1.3769 2.0790 23 7 5.9329 1.6012 2.8004 24 6 5.3035 2.9003 3.0498 25 6 4.6600 -0.4954 5.3917 26 9 5.5870 0.3133 6.0580 27 9 3.5247 -0.6603 6.1924 28 9 5.2330 -1.7449 5.1319 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 0.7094 1.1619 -3.4843 33 1 0.7377 -2.1445 1.9992 34 1 1.5296 -2.5969 0.4707 35 1 2.4630 -2.5819 1.9863 36 1 3.8130 -1.6591 3.0207 37 1 2.4522 -0.9970 3.9577 38 1 8.1128 -0.4673 1.6206 39 1 7.6832 2.1223 1.5890 40 1 5.7046 3.3279 3.9687 41 1 5.5114 3.5709 2.2161 42 1 4.2261 2.7687 3.1504 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000561269931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:03 Heat of formation + Delta-G solvation = -123.053726 kcal Electronic energy + Delta-G solvation = -30742.145216 eV Core-core repulsion = 26115.810210 eV Total energy + Delta-G solvation = -4626.335006 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.11620 -47.65762 -47.49660 -41.98562 -39.24241 -35.63906 -34.33847 -33.84394 -32.86797 -29.86573 -28.62556 -26.99079 -26.72011 -26.05588 -25.24340 -23.31734 -21.42118 -21.07461 -19.88305 -18.69240 -18.49255 -17.99085 -17.62115 -16.90249 -16.51972 -15.82006 -15.58994 -15.33168 -15.11466 -14.56031 -14.44350 -14.27900 -14.19034 -14.00361 -13.70233 -13.66610 -13.52441 -13.22871 -13.01544 -12.87850 -12.56514 -12.51636 -12.37985 -12.20575 -11.86204 -11.68313 -11.52253 -11.36472 -11.05748 -10.86435 -10.73024 -10.30269 -10.19483 -9.84287 -9.41941 -9.25169 -9.06807 -8.45983 -8.27718 -7.66087 -6.10841 -4.18512 2.05153 2.58118 2.97084 3.24772 3.26773 3.26956 3.31146 3.35066 3.55360 3.86010 3.95081 4.12490 4.38308 4.46740 4.69954 4.81243 4.93847 5.07593 5.18536 5.20878 5.22581 5.43429 5.53672 5.61092 5.66843 5.82556 5.89411 6.01395 6.36659 6.43073 6.70143 6.77865 6.89671 7.00927 7.23634 7.34674 7.46982 7.67590 7.96514 8.15285 8.19414 8.45438 8.76959 8.95337 9.47969 10.94380 Molecular weight = 333.14amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.004150 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.744074 B = 6745.428423 C = 7468.261684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.260 3.740 3 H 0.062 0.938 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.586 5.586 13 C 0.079 3.921 14 C 0.515 3.485 15 O -0.556 6.556 16 C -0.140 4.140 17 C -0.026 4.026 18 H 0.130 0.870 19 C 0.207 3.793 20 N -0.473 5.473 21 C -0.027 4.027 22 C -0.047 4.047 23 N -0.430 5.430 24 C 0.069 3.931 25 C 0.464 3.536 26 F -0.182 7.182 27 F -0.181 7.181 28 F -0.164 7.164 29 H 0.093 0.907 30 H 0.030 0.970 31 H 0.010 0.990 32 H 0.264 0.736 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.170 0.830 39 H 0.174 0.826 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.636 0.242 14.552 15.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.160 3.840 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.316 5.316 13 C -0.065 4.065 14 C 0.301 3.699 15 O -0.436 6.436 16 C -0.180 4.180 17 C -0.047 4.047 18 H 0.148 0.852 19 C -0.055 4.055 20 N -0.192 5.192 21 C -0.177 4.177 22 C -0.181 4.181 23 N -0.110 5.110 24 C -0.073 4.073 25 C 0.409 3.591 26 F -0.164 7.164 27 F -0.162 7.162 28 F -0.145 7.145 29 H 0.111 0.889 30 H 0.049 0.951 31 H 0.029 0.971 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.187 0.813 39 H 0.191 0.809 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.533 0.271 14.478 15.886 hybrid contribution 0.442 0.265 -1.012 1.136 sum 6.975 0.536 13.466 15.174 Atomic orbital electron populations 1.22082 0.98133 0.99473 1.00745 1.18927 0.90818 0.94384 0.79833 0.92013 1.21277 1.31786 1.13057 0.90283 0.92304 1.24870 0.94888 0.94966 0.98936 1.69863 1.36369 1.22605 1.23862 0.86563 0.79293 0.79653 0.81951 1.20153 1.21167 1.20241 1.48173 1.48449 1.11704 1.23309 1.21677 0.98977 0.83150 1.02674 1.19851 0.79126 0.86959 0.83970 1.90568 1.58820 1.17131 1.77116 1.21785 0.99052 1.00002 0.97202 1.20371 0.92794 1.02421 0.89157 0.85232 1.21731 0.98057 0.81544 1.04215 1.70156 1.04320 1.30830 1.13919 1.22213 1.00421 0.91114 1.03913 1.22705 0.92139 0.99351 1.03917 1.44959 1.19753 1.07894 1.38375 1.22144 1.00697 0.82170 1.02291 1.20165 0.74772 0.77830 0.86351 1.93177 1.67255 1.73224 1.82713 1.93184 1.51232 1.95680 1.76146 1.93245 1.84930 1.42469 1.93869 0.88854 0.95106 0.97060 0.92654 0.93617 0.89919 0.92514 0.86833 0.87516 0.81273 0.80851 0.91054 0.89488 0.88019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.97 37.16 0.33 -3.06 16 2 C 0.26 6.46 2.64 -69.08 -0.18 6.28 16 3 H 0.06 1.77 6.90 -51.93 -0.36 1.41 16 4 C -0.53 -14.04 7.99 -34.44 -0.28 -14.32 16 5 H 0.06 1.57 7.33 -52.49 -0.38 1.19 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.77 11.32 55.43 0.63 -24.14 16 8 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.59 -12.07 2.75 -175.26 -0.48 -12.55 16 13 C 0.08 1.30 9.26 59.85 0.55 1.86 16 14 C 0.51 9.93 7.36 -10.99 -0.08 9.85 16 15 O -0.56 -11.98 12.70 5.56 0.07 -11.91 16 16 C -0.14 -2.05 3.62 -27.88 -0.10 -2.15 16 17 C -0.03 -0.36 1.82 -91.77 -0.17 -0.53 16 18 H 0.13 1.66 6.43 -51.93 -0.33 1.33 16 19 C 0.21 3.34 4.86 -155.41 -0.75 2.58 16 20 N -0.47 -8.23 10.64 -10.81 -0.12 -8.34 16 21 C -0.03 -0.42 11.87 -17.81 -0.21 -0.63 16 22 C -0.05 -0.65 11.58 -16.56 -0.19 -0.85 16 23 N -0.43 -6.38 3.07 -121.28 -0.37 -6.75 16 24 C 0.07 0.81 10.51 59.84 0.63 1.44 16 25 C 0.46 6.11 2.69 37.16 0.10 6.21 16 26 F -0.18 -2.46 16.96 2.25 0.04 -2.42 16 27 F -0.18 -2.18 16.80 2.25 0.04 -2.14 16 28 F -0.16 -2.36 16.09 2.25 0.04 -2.33 16 29 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 30 H 0.03 0.66 7.67 -51.93 -0.40 0.27 16 31 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.47 7.02 -51.93 -0.36 1.11 16 35 H 0.06 0.79 6.28 -51.93 -0.33 0.46 16 36 H 0.11 1.70 6.86 -51.93 -0.36 1.34 16 37 H 0.11 1.27 7.72 -51.93 -0.40 0.87 16 38 H 0.17 2.12 8.06 -52.49 -0.42 1.70 16 39 H 0.17 1.80 8.06 -52.48 -0.42 1.38 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.10 1.32 5.66 -51.92 -0.29 1.02 16 LS Contribution 354.58 15.07 5.34 5.34 Total: -1.00 -32.09 354.58 -5.48 -37.57 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.20 Total: 3.32 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -0.44 Total: 8.36 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: -0.34 Total: -51.79 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.07 Total: -11.91 kcal Atomic # 9 Polarization: -6.99 SS G_CDS: 0.11 Total: -6.88 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.09 -5.48 -37.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000561269931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.479 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds