Wall clock time and date at job start Tue Mar 31 2020 18:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.46897 * 2 1 4 4 C 1.50703 * 109.47187 * 240.00468 * 2 1 3 5 5 H 1.08002 * 119.99649 * 239.99831 * 4 2 1 6 6 C 1.37872 * 120.00107 * 59.99484 * 4 2 1 7 7 N 1.31512 * 120.00104 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00032 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47315 * 60.00133 * 8 6 4 10 10 H 1.48502 * 109.47223 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46891 * 300.00147 * 8 6 4 12 12 N 1.46501 * 109.47247 * 120.00099 * 2 1 3 13 13 C 1.46499 * 119.99931 * 60.00456 * 12 2 1 14 14 C 1.34774 * 119.99908 * 239.99695 * 12 2 1 15 15 O 1.21282 * 120.00448 * 0.02562 * 14 12 2 16 16 C 1.50701 * 119.99827 * 179.97438 * 14 12 2 17 17 C 1.52998 * 109.46894 * 174.18604 * 16 14 12 18 18 H 1.08996 * 109.47286 * 54.28840 * 17 16 14 19 19 C 1.50693 * 109.47216 * 294.28370 * 17 16 14 20 20 N 1.30503 * 125.65261 * 299.96207 * 19 17 16 21 21 C 1.34124 * 109.25728 * 180.02562 * 20 19 17 22 22 C 1.34678 * 108.02224 * 0.02562 * 21 20 19 23 23 N 1.35050 * 125.64737 * 120.00069 * 19 17 16 24 24 C 1.46493 * 126.40028 * 359.70509 * 23 19 17 25 25 C 1.53008 * 109.46969 * 174.28732 * 17 16 14 26 26 F 1.39902 * 109.47091 * 177.50415 * 25 17 16 27 27 F 1.39898 * 109.46872 * 297.50029 * 25 17 16 28 28 F 1.39898 * 109.47020 * 57.50183 * 25 17 16 29 29 H 1.08998 * 109.47350 * 60.00035 * 1 2 3 30 30 H 1.09001 * 109.46692 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47205 * 299.99407 * 1 2 3 32 32 H 0.97001 * 120.00544 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.46813 * 270.00205 * 13 12 2 34 34 H 1.09005 * 109.47179 * 29.99300 * 13 12 2 35 35 H 1.08997 * 109.47454 * 150.00313 * 13 12 2 36 36 H 1.09002 * 109.46922 * 54.18670 * 16 14 12 37 37 H 1.09000 * 109.46966 * 294.18547 * 16 14 12 38 38 H 1.08001 * 125.99170 * 179.97438 * 21 20 19 39 39 H 1.08003 * 126.59136 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.47013 * 89.99504 * 24 23 19 41 41 H 1.08997 * 109.47594 * 209.99773 * 24 23 19 42 42 H 1.09007 * 109.46821 * 330.00236 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.8259 -2.5201 -4.0079 10 1 1.8269 -0.4197 -5.2205 11 1 3.8064 -1.1207 -4.0082 12 7 2.0184 -0.6906 1.1962 13 6 1.6646 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0833 15 8 3.0860 1.1256 1.8916 16 6 3.2952 -0.7459 3.3140 17 6 4.2611 0.1673 4.0715 18 1 3.7746 1.1209 4.2761 19 6 5.4924 0.4007 3.2346 20 7 6.3100 -0.5236 2.8100 21 6 7.2916 0.0479 2.0966 22 6 7.0744 1.3769 2.0790 23 7 5.9329 1.6012 2.8004 24 6 5.3035 2.9003 3.0498 25 6 4.6600 -0.4954 5.3917 26 9 5.5870 0.3133 6.0580 27 9 3.5247 -0.6603 6.1924 28 9 5.2330 -1.7449 5.1319 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 0.7094 1.1619 -3.4843 33 1 0.7377 -2.1445 1.9992 34 1 1.5296 -2.5969 0.4707 35 1 2.4630 -2.5819 1.9863 36 1 3.8130 -1.6591 3.0207 37 1 2.4522 -0.9970 3.9577 38 1 8.1128 -0.4673 1.6206 39 1 7.6832 2.1223 1.5890 40 1 5.7046 3.3279 3.9687 41 1 5.5114 3.5709 2.2161 42 1 4.2261 2.7687 3.1504 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000561269931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:02 Heat of formation + Delta-G solvation = -141.863705 kcal Electronic energy + Delta-G solvation = -30742.960878 eV Core-core repulsion = 26115.810210 eV Total energy + Delta-G solvation = -4627.150668 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.15510 -48.67412 -48.55970 -43.09659 -40.76187 -37.28801 -35.59262 -34.93939 -34.74270 -31.62895 -29.84210 -28.16661 -27.78192 -27.47874 -27.27619 -24.47726 -22.94933 -22.31188 -21.10374 -20.01111 -19.54506 -19.25583 -18.77721 -18.44821 -18.05557 -17.29241 -16.98599 -16.73363 -16.34374 -16.10710 -15.64059 -15.50797 -15.28375 -15.04685 -14.83119 -14.76153 -14.71070 -14.53688 -14.40457 -14.21984 -13.89343 -13.75660 -13.60444 -13.47417 -13.35254 -13.03032 -12.92803 -12.91835 -12.77111 -12.57121 -12.50643 -12.18349 -12.12938 -11.19607 -11.01211 -10.70174 -10.52748 -10.46479 -9.40463 -9.29718 -8.15562 -6.30931 0.95604 1.39831 1.41383 1.48300 1.50984 1.77734 1.94303 2.11750 2.26566 2.42670 2.76810 2.80743 2.95944 3.12544 3.42414 3.53302 3.72456 3.89724 3.98061 4.10104 4.34395 4.38058 4.39662 4.54617 4.64344 4.71644 4.75797 4.77837 4.79233 4.92513 5.05459 5.09276 5.34667 5.47978 5.60240 5.67254 5.81846 6.04166 6.16760 6.17476 6.76020 6.82208 7.05792 7.30125 7.46330 8.88010 Molecular weight = 333.14amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.004150 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.744074 B = 6745.428423 C = 7468.261684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.267 3.733 3 H 0.014 0.986 4 C -0.538 4.538 5 H 0.054 0.946 6 C 0.020 3.980 7 N -0.915 5.915 8 Si 0.957 3.043 9 H -0.264 1.264 10 H -0.282 1.282 11 H -0.281 1.281 12 N -0.598 5.598 13 C 0.076 3.924 14 C 0.506 3.494 15 O -0.584 6.584 16 C -0.126 4.126 17 C -0.025 4.025 18 H 0.140 0.860 19 C 0.187 3.813 20 N -0.503 5.503 21 C -0.054 4.054 22 C -0.046 4.046 23 N -0.438 5.438 24 C 0.066 3.934 25 C 0.474 3.526 26 F -0.183 7.183 27 F -0.171 7.171 28 F -0.171 7.171 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.023 0.977 32 H 0.264 0.736 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.114 0.886 37 H 0.141 0.859 38 H 0.187 0.813 39 H 0.206 0.794 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.898 -0.531 15.456 16.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.165 3.835 3 H 0.032 0.968 4 C -0.576 4.576 5 H 0.072 0.928 6 C -0.180 4.180 7 N -0.553 5.553 8 Si 0.783 3.217 9 H -0.189 1.189 10 H -0.207 1.207 11 H -0.206 1.206 12 N -0.328 5.328 13 C -0.066 4.066 14 C 0.294 3.706 15 O -0.466 6.466 16 C -0.167 4.167 17 C -0.047 4.047 18 H 0.158 0.842 19 C -0.075 4.075 20 N -0.223 5.223 21 C -0.203 4.203 22 C -0.181 4.181 23 N -0.117 5.117 24 C -0.075 4.075 25 C 0.419 3.581 26 F -0.165 7.165 27 F -0.152 7.152 28 F -0.152 7.152 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.132 0.868 37 H 0.159 0.841 38 H 0.204 0.796 39 H 0.223 0.777 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.789 -0.522 15.413 16.850 hybrid contribution 0.393 0.560 -1.273 1.445 sum 7.182 0.038 14.140 15.860 Atomic orbital electron populations 1.21857 0.97100 1.00006 1.00003 1.18472 0.91500 0.92179 0.81299 0.96848 1.21528 1.31721 1.12961 0.91424 0.92786 1.25625 0.95080 0.95620 1.01689 1.69993 1.37233 1.23717 1.24397 0.85626 0.78301 0.79141 0.78657 1.18882 1.20707 1.20636 1.48149 1.49003 1.13247 1.22411 1.21881 1.01345 0.80769 1.02640 1.20593 0.78272 0.86858 0.84857 1.90553 1.59471 1.18626 1.77916 1.21711 1.00191 0.99265 0.95487 1.20415 0.92135 1.02898 0.89256 0.84197 1.22055 0.98619 0.81988 1.04838 1.70099 1.05279 1.31981 1.14940 1.22689 1.00982 0.92092 1.04520 1.23281 0.91950 0.99777 1.03045 1.45245 1.19940 1.08508 1.38052 1.22306 0.99838 0.81237 1.04153 1.19919 0.74868 0.77350 0.86008 1.93174 1.67397 1.73270 1.82645 1.93206 1.50621 1.95598 1.75812 1.93233 1.85126 1.42935 1.93938 0.91561 0.93757 0.95755 0.92664 0.90924 0.91542 0.89757 0.86771 0.84124 0.79568 0.77702 0.88050 0.88677 0.89500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.12 8.97 71.98 0.65 -5.47 16 2 C 0.27 13.47 2.64 44.25 0.12 13.58 16 3 H 0.01 0.81 6.90 -2.39 -0.02 0.79 16 4 C -0.54 -29.04 7.99 25.60 0.20 -28.83 16 5 H 0.05 2.90 7.33 -2.91 -0.02 2.88 16 6 C 0.02 1.07 5.30 84.65 0.45 1.52 16 7 N -0.91 -51.84 11.32 21.45 0.24 -51.60 16 8 Si 0.96 43.10 29.54 68.60 2.03 45.13 16 9 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 N -0.60 -24.25 2.75 -826.78 -2.28 -26.53 16 13 C 0.08 2.36 9.26 127.77 1.18 3.54 16 14 C 0.51 19.19 7.36 87.66 0.65 19.83 16 15 O -0.58 -25.39 12.70 -3.03 -0.04 -25.43 16 16 C -0.13 -3.47 3.62 29.85 0.11 -3.36 16 17 C -0.03 -0.68 1.82 -11.54 -0.02 -0.70 16 18 H 0.14 3.40 6.43 -2.39 -0.02 3.38 16 19 C 0.19 5.88 4.86 138.12 0.67 6.55 16 20 N -0.50 -17.21 10.64 -188.13 -2.00 -19.22 16 21 C -0.05 -1.63 11.87 83.53 0.99 -0.64 16 22 C -0.05 -1.23 11.58 83.09 0.96 -0.27 16 23 N -0.44 -12.57 3.07 -537.61 -1.65 -14.22 16 24 C 0.07 1.48 10.51 127.77 1.34 2.82 16 25 C 0.47 11.59 2.69 71.98 0.19 11.78 16 26 F -0.18 -4.65 16.96 44.97 0.76 -3.88 16 27 F -0.17 -3.67 16.80 44.97 0.76 -2.91 16 28 F -0.17 -4.66 16.09 44.97 0.72 -3.93 16 29 H 0.07 3.47 6.07 -2.39 -0.01 3.45 16 30 H 0.04 1.89 7.67 -2.39 -0.02 1.87 16 31 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.07 2.28 7.02 -2.38 -0.02 2.26 16 35 H 0.08 2.12 6.28 -2.39 -0.02 2.11 16 36 H 0.11 3.18 6.86 -2.39 -0.02 3.17 16 37 H 0.14 2.87 7.72 -2.39 -0.02 2.86 16 38 H 0.19 4.57 8.06 -2.91 -0.02 4.54 16 39 H 0.21 3.85 8.06 -2.91 -0.02 3.83 16 40 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.09 2.22 5.66 -2.38 -0.01 2.21 16 Total: -1.00 -70.45 354.58 7.09 -63.36 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 1.06 Total: 18.88 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: 7.49 Total: 20.35 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -5.69 Total: -111.57 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.04 Total: -25.43 kcal Atomic # 9 Polarization: -12.97 SS G_CDS: 2.24 Total: -10.73 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -70.45 7.09 -63.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000561269931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.504 kcal (2) G-P(sol) polarization free energy of solvation -70.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds