Wall clock time and date at job start Tue Mar 31 2020 17:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.51583 * 2 1 4 4 O 1.42965 * 109.51250 * 120.14852 * 2 1 3 5 5 C 1.42956 * 114.17013 * 182.50518 * 4 2 1 6 6 C 1.53721 * 109.14475 * 297.29297 * 5 4 2 7 7 N 1.47145 * 108.16521 * 52.53510 * 6 5 4 8 8 C 1.34776 * 120.98570 * 129.43053 * 7 6 5 9 9 O 1.21354 * 120.00311 * 177.93803 * 8 7 6 10 10 C 1.49367 * 119.99550 * 357.93729 * 8 7 6 11 11 O 1.21355 * 120.00023 * 6.53966 * 10 8 7 12 12 N 1.34781 * 120.00041 * 186.25642 * 10 8 7 13 13 C 1.39112 * 120.00314 * 175.20765 * 12 10 8 14 14 C 1.39702 * 119.57955 * 185.42603 * 13 12 10 15 15 C 1.38654 * 119.49478 * 179.70456 * 14 13 12 16 16 C 1.38352 * 118.66652 * 0.55029 * 15 14 13 17 17 C 1.40593 * 119.13428 * 359.73241 * 16 15 14 18 18 C 1.41341 * 119.77972 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00155 * 359.97438 * 18 17 16 20 20 C 1.40027 * 119.99695 * 179.97438 * 18 17 16 21 21 N 1.30743 * 120.00501 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00038 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47045 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47607 * 119.99694 * 22 20 18 25 25 H 1.48507 * 109.47014 * 239.99732 * 22 20 18 26 26 N 1.31938 * 119.57700 * 5.68876 * 13 12 10 27 27 C 1.47152 * 118.03395 * 309.16048 * 7 6 5 28 28 H 1.09004 * 109.68348 * 170.54477 * 27 7 6 29 29 C 1.53000 * 109.68274 * 291.05858 * 27 7 6 30 30 H 1.08997 * 109.47342 * 180.09989 * 1 2 3 31 31 H 1.08996 * 109.47404 * 300.10615 * 1 2 3 32 32 H 1.09003 * 109.47260 * 60.10461 * 1 2 3 33 33 H 1.08997 * 109.51025 * 57.33880 * 5 4 2 34 34 H 1.08996 * 109.51474 * 177.50084 * 5 4 2 35 35 H 1.09004 * 109.83681 * 292.85291 * 6 5 4 36 36 H 1.09001 * 109.74532 * 172.16627 * 6 5 4 37 37 H 0.96998 * 119.99442 * 355.20567 * 12 10 8 38 38 H 1.08007 * 120.25480 * 359.97438 * 14 13 12 39 39 H 1.07992 * 120.66667 * 180.26783 * 15 14 13 40 40 H 1.07996 * 120.42662 * 179.75269 * 16 15 14 41 41 H 0.96994 * 120.00475 * 180.02562 * 21 20 18 42 42 H 1.09003 * 109.46721 * 60.00472 * 29 27 7 43 43 H 1.08997 * 109.47242 * 179.97438 * 29 27 7 44 44 H 1.09000 * 109.47306 * 300.00145 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 8 2.0075 -0.6768 1.1653 5 6 3.4312 -0.6860 1.2946 6 6 4.0402 -1.4511 0.1086 7 7 3.5012 -0.8758 -1.1339 8 6 4.3193 -0.5034 -2.1381 9 8 3.8534 -0.0657 -3.1697 10 6 5.7993 -0.6294 -1.9813 11 8 6.2613 -1.1754 -1.0010 12 7 6.6216 -0.1417 -2.9314 13 6 7.9992 -0.1692 -2.7400 14 6 8.8379 0.4401 -3.6766 15 6 10.2103 0.4170 -3.4809 16 6 10.7104 -0.2236 -2.3613 17 6 9.8148 -0.8233 -1.4586 18 6 10.3109 -1.4819 -0.3106 19 1 11.3748 -1.5237 -0.1294 20 6 9.4230 -2.0803 0.5918 21 7 8.1350 -2.0294 0.3728 22 14 10.0785 -2.9502 2.1094 23 1 11.5611 -2.8667 2.1261 24 1 9.5320 -2.3000 3.3275 25 1 9.6636 -4.3758 2.0808 26 7 8.4974 -0.7748 -1.6789 27 6 2.0420 -0.7247 -1.2500 28 1 1.8030 -0.1396 -2.1380 29 6 1.3875 -2.1040 -1.3504 30 1 -0.3634 -1.0276 0.0018 31 1 -0.3634 0.5155 0.8890 32 1 -0.3634 0.5122 -0.8909 33 1 3.8029 0.3386 1.2997 34 1 3.7090 -1.1796 2.2259 35 1 3.7717 -2.5057 0.1716 36 1 5.1251 -1.3467 0.1210 37 1 6.2527 0.2283 -3.7486 38 1 8.4201 0.9291 -4.5442 39 1 10.8758 0.8858 -4.1906 40 1 11.7749 -0.2622 -2.1830 41 1 7.5200 -2.4436 0.9980 42 1 1.6210 -2.6828 -0.4567 43 1 0.3071 -1.9882 -1.4357 44 1 1.7682 -2.6237 -2.2296 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890162392.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:18 Heat of formation + Delta-G solvation = -29.045307 kcal Electronic energy + Delta-G solvation = -29791.375594 eV Core-core repulsion = 25710.973839 eV Total energy + Delta-G solvation = -4080.401755 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.85095 -39.38780 -38.25721 -37.35505 -35.21214 -34.32942 -33.61519 -33.07190 -30.44902 -29.38270 -29.08822 -28.70646 -25.97358 -25.36570 -23.86046 -23.30076 -21.83994 -21.17553 -19.87137 -19.13245 -17.99625 -17.03903 -16.96038 -16.31760 -16.17615 -15.97397 -15.52806 -14.89583 -14.80079 -14.64904 -14.53526 -13.91737 -13.85015 -13.61007 -13.24524 -13.04194 -12.99035 -12.81669 -12.41698 -12.17551 -12.09163 -12.03451 -11.71387 -11.67205 -11.26459 -11.11399 -11.04180 -10.80656 -10.72991 -10.58257 -10.47837 -10.13758 -10.00793 -9.88926 -9.16584 -8.66176 -8.55825 -8.09962 -7.36820 -7.14183 -6.29560 -4.51037 1.79856 2.55277 2.75202 3.01813 3.11178 3.14244 3.18260 3.62112 3.82092 3.82470 3.97194 4.49207 4.73797 4.79223 4.80558 4.93762 5.06064 5.15165 5.26408 5.26700 5.44895 5.51676 5.64614 5.68210 5.74287 5.87011 5.90339 5.97486 6.00702 6.11122 6.18420 6.37804 6.42239 6.52154 6.73082 6.73876 7.08458 7.14680 7.23858 7.38019 7.47258 7.70260 7.76907 7.98065 8.08522 8.31013 8.55666 8.84889 8.94378 10.06591 10.34298 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013055 B = 0.004210 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.235909 B = 6649.110670 C = 8424.963837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.081 3.919 3 H 0.061 0.939 4 O -0.380 6.380 5 C 0.051 3.949 6 C 0.016 3.984 7 N -0.582 5.582 8 C 0.510 3.490 9 O -0.535 6.535 10 C 0.474 3.526 11 O -0.379 6.379 12 N -0.634 5.634 13 C 0.366 3.634 14 C -0.347 4.347 15 C -0.036 4.036 16 C -0.298 4.298 17 C 0.272 3.728 18 C -0.422 4.422 19 H 0.084 0.916 20 C 0.062 3.938 21 N -0.666 5.666 22 Si 0.898 3.102 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.275 1.275 26 N -0.474 5.474 27 C 0.104 3.896 28 H 0.105 0.895 29 C -0.156 4.156 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.106 0.894 35 H 0.072 0.928 36 H 0.176 0.824 37 H 0.413 0.587 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.270 0.730 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.840 1.555 0.729 12.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.022 3.978 3 H 0.079 0.921 4 O -0.299 6.299 5 C -0.027 4.027 6 C -0.105 4.105 7 N -0.316 5.316 8 C 0.294 3.706 9 O -0.413 6.413 10 C 0.252 3.748 11 O -0.244 6.244 12 N -0.281 5.281 13 C 0.128 3.872 14 C -0.373 4.373 15 C -0.060 4.060 16 C -0.322 4.322 17 C 0.147 3.853 18 C -0.453 4.453 19 H 0.102 0.898 20 C -0.167 4.167 21 N -0.285 5.285 22 Si 0.722 3.278 23 H -0.186 1.186 24 H -0.200 1.200 25 H -0.200 1.200 26 N -0.193 5.193 27 C 0.001 3.999 28 H 0.123 0.877 29 C -0.214 4.214 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.191 0.809 37 H 0.249 0.751 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.669 0.816 1.785 13.809 hybrid contribution 0.708 0.306 -0.609 0.983 sum -12.961 1.123 1.176 13.063 Atomic orbital electron populations 1.21825 0.92404 1.03357 1.02647 1.22407 0.95404 0.95033 0.84940 0.92128 1.87915 1.21789 1.77279 1.42899 1.23111 0.80174 1.00361 0.99012 1.24137 1.07421 0.97256 0.81646 1.48081 1.05800 1.60887 1.16844 1.20691 0.88615 0.78019 0.83313 1.90683 1.77608 1.45332 1.27631 1.20139 0.86396 0.82627 0.85662 1.90739 1.73795 1.34463 1.25405 1.43011 1.04635 1.59895 1.20607 1.18537 0.81954 0.93801 0.92903 1.20516 0.93920 1.18551 1.04266 1.20594 0.93735 0.95858 0.95834 1.21669 0.99011 1.11617 0.99867 1.18357 0.86038 0.89235 0.91720 1.19632 0.94443 1.28028 1.03187 0.89780 1.26136 0.94978 0.96353 0.99205 1.70310 1.01534 1.26153 1.30497 0.86430 0.80398 0.79463 0.81517 1.18577 1.19954 1.19988 1.68613 1.13923 1.19912 1.16846 1.21945 0.79813 0.98398 0.99782 0.87736 1.22066 1.00504 0.96157 1.02693 0.91128 0.91561 0.90896 0.92780 0.87591 0.90971 0.80881 0.75145 0.88692 0.88307 0.88319 0.91800 0.91549 0.91072 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.01 37.16 0.33 -0.90 16 2 C 0.08 0.93 3.10 -26.58 -0.08 0.85 16 3 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 4 O -0.38 -4.91 10.01 -35.23 -0.35 -5.26 16 5 C 0.05 0.66 7.00 37.53 0.26 0.92 16 6 C 0.02 0.24 6.03 -3.31 -0.02 0.22 16 7 N -0.58 -8.88 2.71 -165.03 -0.45 -9.33 16 8 C 0.51 9.00 7.77 -11.62 -0.09 8.91 16 9 O -0.54 -9.88 15.96 5.49 0.09 -9.79 16 10 C 0.47 9.54 7.76 -11.62 -0.09 9.45 16 11 O -0.38 -8.44 8.81 5.49 0.05 -8.39 16 12 N -0.63 -12.84 5.37 -11.83 -0.06 -12.91 16 13 C 0.37 8.66 7.42 -155.09 -1.15 7.51 16 14 C -0.35 -7.60 9.95 -38.88 -0.39 -7.99 16 15 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 16 C -0.30 -7.19 9.83 -38.65 -0.38 -7.57 16 17 C 0.27 7.25 6.55 -85.00 -0.56 6.69 16 18 C -0.42 -10.97 9.14 -37.73 -0.34 -11.32 16 19 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 20 C 0.06 1.51 5.50 -17.34 -0.10 1.42 16 21 N -0.67 -16.72 8.99 55.55 0.50 -16.22 16 22 Si 0.90 18.05 29.56 -169.99 -5.02 13.03 16 23 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 26 N -0.47 -12.57 5.74 -10.28 -0.06 -12.63 16 27 C 0.10 1.32 2.84 -67.42 -0.19 1.13 16 28 H 0.10 1.37 7.09 -51.93 -0.37 1.00 16 29 C -0.16 -1.74 8.63 37.16 0.32 -1.42 16 30 H 0.07 0.58 6.38 -51.93 -0.33 0.25 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.03 7.65 -51.93 -0.40 0.63 16 36 H 0.18 3.09 3.94 -56.43 -0.22 2.87 16 37 H 0.41 7.21 8.18 -40.82 -0.33 6.87 16 38 H 0.09 1.81 8.06 -52.48 -0.42 1.38 16 39 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 40 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 41 H 0.27 6.19 8.29 -40.82 -0.34 5.86 16 42 H 0.07 0.78 7.21 -51.93 -0.37 0.40 16 43 H 0.07 0.63 6.42 -51.93 -0.33 0.29 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 355.19 15.07 5.35 5.35 Total: -1.00 -29.59 355.19 -8.54 -38.13 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -5.71 Total: 11.30 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -2.87 Total: 6.70 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.07 Total: -51.08 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.22 Total: -23.44 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.02 Total: 13.03 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.59 -8.54 -38.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890162392.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.089 kcal (2) G-P(sol) polarization free energy of solvation -29.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds