Wall clock time and date at job start Tue Mar 31 2020 17:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.51583 * 2 1 4 4 O 1.42965 * 109.51250 * 120.14852 * 2 1 3 5 5 C 1.42956 * 114.17013 * 182.50518 * 4 2 1 6 6 C 1.53721 * 109.14475 * 297.29297 * 5 4 2 7 7 N 1.47145 * 108.16521 * 52.53510 * 6 5 4 8 8 C 1.34776 * 120.98570 * 129.43053 * 7 6 5 9 9 O 1.21354 * 120.00311 * 177.93803 * 8 7 6 10 10 C 1.49367 * 119.99550 * 357.93729 * 8 7 6 11 11 O 1.21355 * 120.00023 * 6.53966 * 10 8 7 12 12 N 1.34781 * 120.00041 * 186.25642 * 10 8 7 13 13 C 1.39112 * 120.00314 * 175.20765 * 12 10 8 14 14 C 1.39702 * 119.57955 * 185.42603 * 13 12 10 15 15 C 1.38654 * 119.49478 * 179.70456 * 14 13 12 16 16 C 1.38352 * 118.66652 * 0.55029 * 15 14 13 17 17 C 1.40593 * 119.13428 * 359.73241 * 16 15 14 18 18 C 1.41341 * 119.77972 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00155 * 359.97438 * 18 17 16 20 20 C 1.40027 * 119.99695 * 179.97438 * 18 17 16 21 21 N 1.30743 * 120.00501 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00038 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47045 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47607 * 119.99694 * 22 20 18 25 25 H 1.48507 * 109.47014 * 239.99732 * 22 20 18 26 26 N 1.31938 * 119.57700 * 5.68876 * 13 12 10 27 27 C 1.47152 * 118.03395 * 309.16048 * 7 6 5 28 28 H 1.09004 * 109.68348 * 170.54477 * 27 7 6 29 29 C 1.53000 * 109.68274 * 291.05858 * 27 7 6 30 30 H 1.08997 * 109.47342 * 180.09989 * 1 2 3 31 31 H 1.08996 * 109.47404 * 300.10615 * 1 2 3 32 32 H 1.09003 * 109.47260 * 60.10461 * 1 2 3 33 33 H 1.08997 * 109.51025 * 57.33880 * 5 4 2 34 34 H 1.08996 * 109.51474 * 177.50084 * 5 4 2 35 35 H 1.09004 * 109.83681 * 292.85291 * 6 5 4 36 36 H 1.09001 * 109.74532 * 172.16627 * 6 5 4 37 37 H 0.96998 * 119.99442 * 355.20567 * 12 10 8 38 38 H 1.08007 * 120.25480 * 359.97438 * 14 13 12 39 39 H 1.07992 * 120.66667 * 180.26783 * 15 14 13 40 40 H 1.07996 * 120.42662 * 179.75269 * 16 15 14 41 41 H 0.96994 * 120.00475 * 180.02562 * 21 20 18 42 42 H 1.09003 * 109.46721 * 60.00472 * 29 27 7 43 43 H 1.08997 * 109.47242 * 179.97438 * 29 27 7 44 44 H 1.09000 * 109.47306 * 300.00145 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 8 2.0075 -0.6768 1.1653 5 6 3.4312 -0.6860 1.2946 6 6 4.0402 -1.4511 0.1086 7 7 3.5012 -0.8758 -1.1339 8 6 4.3193 -0.5034 -2.1381 9 8 3.8534 -0.0657 -3.1697 10 6 5.7993 -0.6294 -1.9813 11 8 6.2613 -1.1754 -1.0010 12 7 6.6216 -0.1417 -2.9314 13 6 7.9992 -0.1692 -2.7400 14 6 8.8379 0.4401 -3.6766 15 6 10.2103 0.4170 -3.4809 16 6 10.7104 -0.2236 -2.3613 17 6 9.8148 -0.8233 -1.4586 18 6 10.3109 -1.4819 -0.3106 19 1 11.3748 -1.5237 -0.1294 20 6 9.4230 -2.0803 0.5918 21 7 8.1350 -2.0294 0.3728 22 14 10.0785 -2.9502 2.1094 23 1 11.5611 -2.8667 2.1261 24 1 9.5320 -2.3000 3.3275 25 1 9.6636 -4.3758 2.0808 26 7 8.4974 -0.7748 -1.6789 27 6 2.0420 -0.7247 -1.2500 28 1 1.8030 -0.1396 -2.1380 29 6 1.3875 -2.1040 -1.3504 30 1 -0.3634 -1.0276 0.0018 31 1 -0.3634 0.5155 0.8890 32 1 -0.3634 0.5122 -0.8909 33 1 3.8029 0.3386 1.2997 34 1 3.7090 -1.1796 2.2259 35 1 3.7717 -2.5057 0.1716 36 1 5.1251 -1.3467 0.1210 37 1 6.2527 0.2283 -3.7486 38 1 8.4201 0.9291 -4.5442 39 1 10.8758 0.8858 -4.1906 40 1 11.7749 -0.2622 -2.1830 41 1 7.5200 -2.4436 0.9980 42 1 1.6210 -2.6828 -0.4567 43 1 0.3071 -1.9882 -1.4357 44 1 1.7682 -2.6237 -2.2296 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890162392.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:16 Heat of formation + Delta-G solvation = -47.236755 kcal Electronic energy + Delta-G solvation = -29792.164434 eV Core-core repulsion = 25710.973839 eV Total energy + Delta-G solvation = -4081.190595 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.20513 -40.81998 -39.72233 -38.95074 -36.60714 -35.77062 -34.97435 -34.54719 -32.27318 -31.11689 -30.15026 -29.75117 -27.69051 -26.69212 -25.15203 -24.41946 -23.52629 -22.80806 -21.31026 -20.41837 -19.62011 -18.54024 -18.36595 -17.85502 -17.30588 -17.19887 -16.78189 -16.45212 -16.30452 -16.22918 -15.81534 -15.57173 -15.30064 -15.09375 -14.69499 -14.33281 -14.23159 -13.90343 -13.78488 -13.73237 -13.20037 -13.02968 -12.89042 -12.75055 -12.70360 -12.68230 -12.55216 -12.32973 -12.15410 -12.00608 -11.73580 -11.65116 -11.55279 -11.22772 -10.92583 -10.20255 -9.93744 -9.74695 -9.13750 -8.94001 -8.09189 -6.41672 0.27550 1.00887 1.19741 1.25958 1.45349 1.54898 1.57693 2.26385 2.28840 2.34624 2.72474 2.97901 3.24600 3.55606 3.81315 3.94132 4.00640 4.01165 4.15348 4.29132 4.30216 4.31920 4.52892 4.62897 4.69297 4.72167 4.78780 4.80110 4.85807 4.91580 4.94180 4.96815 5.06096 5.15548 5.19011 5.34271 5.37136 5.62856 5.75345 5.88462 5.92192 6.08242 6.11394 6.26118 6.44891 6.66590 6.78625 7.04319 7.24177 8.23216 8.55937 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013055 B = 0.004210 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.235909 B = 6649.110670 C = 8424.963837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.078 3.922 3 H 0.055 0.945 4 O -0.382 6.382 5 C 0.057 3.943 6 C 0.019 3.981 7 N -0.575 5.575 8 C 0.515 3.485 9 O -0.546 6.546 10 C 0.465 3.535 11 O -0.401 6.401 12 N -0.629 5.629 13 C 0.347 3.653 14 C -0.342 4.342 15 C -0.033 4.033 16 C -0.321 4.321 17 C 0.238 3.762 18 C -0.459 4.459 19 H 0.086 0.914 20 C 0.019 3.981 21 N -0.692 5.692 22 Si 0.973 3.027 23 H -0.260 1.260 24 H -0.268 1.268 25 H -0.271 1.271 26 N -0.503 5.503 27 C 0.099 3.901 28 H 0.104 0.896 29 C -0.150 4.150 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.123 0.877 35 H 0.078 0.922 36 H 0.149 0.851 37 H 0.424 0.576 38 H 0.128 0.872 39 H 0.138 0.862 40 H 0.108 0.892 41 H 0.275 0.725 42 H 0.060 0.940 43 H 0.100 0.900 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.366 1.732 0.821 14.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.020 3.980 3 H 0.073 0.927 4 O -0.301 6.301 5 C -0.020 4.020 6 C -0.102 4.102 7 N -0.308 5.308 8 C 0.298 3.702 9 O -0.425 6.425 10 C 0.244 3.756 11 O -0.267 6.267 12 N -0.279 5.279 13 C 0.109 3.891 14 C -0.368 4.368 15 C -0.057 4.057 16 C -0.344 4.344 17 C 0.113 3.887 18 C -0.489 4.489 19 H 0.104 0.896 20 C -0.207 4.207 21 N -0.311 5.311 22 Si 0.794 3.206 23 H -0.183 1.183 24 H -0.193 1.193 25 H -0.196 1.196 26 N -0.223 5.223 27 C -0.003 4.003 28 H 0.122 0.878 29 C -0.208 4.208 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.066 0.934 34 H 0.141 0.859 35 H 0.096 0.904 36 H 0.165 0.835 37 H 0.262 0.738 38 H 0.146 0.854 39 H 0.156 0.844 40 H 0.126 0.874 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.119 0.881 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.234 1.007 1.862 15.381 hybrid contribution 1.123 0.315 -0.736 1.379 sum -14.112 1.323 1.126 14.218 Atomic orbital electron populations 1.21848 0.89689 1.04224 1.03922 1.22583 0.97410 0.94278 0.83732 0.92712 1.87926 1.21264 1.77437 1.43496 1.23052 0.80408 0.99813 0.98742 1.23966 1.05998 0.97938 0.82267 1.48185 1.06956 1.59535 1.16162 1.20165 0.87530 0.78656 0.83870 1.90672 1.77382 1.46374 1.28050 1.20673 0.87639 0.82038 0.85232 1.90788 1.74798 1.35075 1.26082 1.43003 1.03630 1.59937 1.21281 1.18961 0.83478 0.93765 0.92876 1.20943 0.93999 1.17291 1.04556 1.21036 0.94412 0.94725 0.95563 1.21859 0.99325 1.12539 1.00670 1.18824 0.86857 0.90176 0.92826 1.19927 0.94928 1.29733 1.04339 0.89629 1.26894 0.95136 0.96792 1.01851 1.70427 1.02496 1.26622 1.31597 0.85298 0.79634 0.78097 0.77549 1.18340 1.19267 1.19595 1.68573 1.14160 1.21160 1.18363 1.22239 0.77836 0.99673 1.00539 0.87848 1.22043 1.02132 0.94698 1.01885 0.90418 0.90912 0.89068 0.93440 0.85914 0.90391 0.83460 0.73760 0.85403 0.84409 0.87420 0.91384 0.92078 0.88138 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.01 71.98 0.65 -1.32 16 2 C 0.08 1.66 3.10 30.69 0.10 1.75 16 3 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 4 O -0.38 -9.23 10.01 -148.98 -1.49 -10.72 16 5 C 0.06 1.44 7.00 72.22 0.51 1.95 16 6 C 0.02 0.58 6.03 86.50 0.52 1.10 16 7 N -0.58 -17.39 2.71 -794.38 -2.15 -19.54 16 8 C 0.52 18.26 7.77 87.24 0.68 18.94 16 9 O -0.55 -19.93 15.96 -3.26 -0.05 -19.98 16 10 C 0.47 19.20 7.76 87.24 0.68 19.88 16 11 O -0.40 -18.57 8.81 -3.26 -0.03 -18.60 16 12 N -0.63 -25.77 5.37 -309.70 -1.66 -27.44 16 13 C 0.35 16.60 7.42 133.30 0.99 17.58 16 14 C -0.34 -14.60 9.95 22.72 0.23 -14.38 16 15 C -0.03 -1.41 10.15 22.40 0.23 -1.19 16 16 C -0.32 -15.61 9.83 22.87 0.22 -15.39 16 17 C 0.24 13.13 6.55 40.20 0.26 13.39 16 18 C -0.46 -24.66 9.14 23.47 0.21 -24.45 16 19 H 0.09 4.35 7.85 -2.91 -0.02 4.33 16 20 C 0.02 0.96 5.50 85.29 0.47 1.43 16 21 N -0.69 -35.92 8.99 21.84 0.20 -35.72 16 22 Si 0.97 37.81 29.56 68.60 2.03 39.83 16 23 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 24 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 25 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 26 N -0.50 -27.49 5.74 -186.44 -1.07 -28.56 16 27 C 0.10 2.37 2.84 44.97 0.13 2.50 16 28 H 0.10 2.54 7.09 -2.39 -0.02 2.52 16 29 C -0.15 -3.04 8.63 71.98 0.62 -2.42 16 30 H 0.08 1.00 6.38 -2.39 -0.02 0.99 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.08 2.22 7.65 -2.39 -0.02 2.21 16 36 H 0.15 5.46 3.94 -73.68 -0.29 5.17 16 37 H 0.42 14.71 8.18 -92.71 -0.76 13.95 16 38 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 39 H 0.14 4.68 8.06 -2.91 -0.02 4.66 16 40 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 41 H 0.28 13.02 8.29 -92.71 -0.77 12.25 16 42 H 0.06 1.32 7.21 -2.39 -0.02 1.30 16 43 H 0.10 1.45 6.42 -2.39 -0.02 1.44 16 44 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -65.43 355.19 2.27 -63.16 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: 0.01 Total: 38.18 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: 6.49 Total: 19.38 kcal Atomic # 7 Polarization: -106.57 SS G_CDS: -4.69 Total: -111.25 kcal Atomic # 8 Polarization: -47.73 SS G_CDS: -1.57 Total: -49.30 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.83 kcal Total: -65.43 2.27 -63.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890162392.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.921 kcal (2) G-P(sol) polarization free energy of solvation -65.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds