Wall clock time and date at job start Tue Mar 31 2020 17:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.99267 * 2 1 4 4 C 1.54332 * 109.99068 * 238.95964 * 2 1 3 5 5 H 1.09004 * 110.99911 * 100.12442 * 4 2 1 6 6 N 1.46494 * 110.51606 * 336.97912 * 4 2 1 7 7 C 1.36933 * 120.00430 * 95.94708 * 6 4 2 8 8 H 1.07997 * 120.00037 * 359.97438 * 7 6 4 9 9 C 1.38812 * 120.00388 * 179.97438 * 7 6 4 10 10 N 1.31624 * 119.99886 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00364 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47210 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47526 * 120.00072 * 11 9 7 14 14 H 1.48501 * 109.47240 * 240.00091 * 11 9 7 15 15 C 1.55156 * 103.01723 * 218.66231 * 4 2 1 16 16 C 1.54909 * 101.58062 * 35.31066 * 15 4 2 17 17 N 1.47022 * 109.88039 * 121.09236 * 2 1 3 18 18 C 1.34776 * 125.64989 * 298.39512 * 17 2 1 19 19 O 1.21556 * 120.00125 * 359.71928 * 18 17 2 20 20 C 1.47882 * 119.99948 * 179.72145 * 18 17 2 21 21 C 1.39286 * 119.60763 * 179.97438 * 20 18 17 22 22 C 1.38529 * 119.12361 * 180.02562 * 21 20 18 23 23 C 1.38921 * 118.53352 * 0.25407 * 22 21 20 24 24 C 1.39723 * 119.43059 * 359.39774 * 23 22 21 25 25 N 1.31988 * 120.36419 * 0.66190 * 24 23 22 26 26 O 1.35993 * 120.44602 * 180.54198 * 24 23 22 27 27 C 1.43145 * 116.71707 * 342.75203 * 26 24 23 28 28 C 1.53460 * 108.33898 * 46.50033 * 27 26 24 29 29 O 1.35782 * 119.57366 * 179.97438 * 23 22 21 30 30 H 1.09004 * 109.47390 * 304.43006 * 1 2 3 31 31 H 1.08997 * 109.46978 * 64.43035 * 1 2 3 32 32 H 1.09003 * 109.46657 * 184.43337 * 1 2 3 33 33 H 0.97007 * 119.99901 * 275.94110 * 6 4 2 34 34 H 0.97003 * 120.00274 * 179.97438 * 10 9 7 35 35 H 1.09001 * 111.00399 * 277.22980 * 15 4 2 36 36 H 1.08999 * 111.03240 * 153.39901 * 15 4 2 37 37 H 1.09000 * 110.36272 * 204.14625 * 16 15 4 38 38 H 1.08998 * 110.36470 * 81.83135 * 16 15 4 39 39 H 1.07997 * 120.43625 * 0.10221 * 21 20 18 40 40 H 1.07996 * 120.73614 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.68957 * 166.21417 * 27 26 24 42 42 H 1.08996 * 109.68895 * 286.75274 * 27 26 24 43 43 H 1.08994 * 109.71321 * 59.82696 * 28 27 26 44 44 H 1.09004 * 109.70877 * 180.40921 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0244 0.0000 4 6 2.0577 -0.7479 -1.2427 5 1 2.3593 -0.0473 -2.0213 6 7 1.0465 -1.6790 -1.7493 7 6 0.2170 -1.2998 -2.7706 8 1 0.3079 -0.3141 -3.2025 9 6 -0.7407 -2.1823 -3.2510 10 7 -0.8513 -3.3838 -2.7251 11 14 -1.8728 -1.6647 -4.6438 12 1 -1.5468 -0.2759 -5.0567 13 1 -1.6877 -2.5801 -5.7984 14 1 -3.2835 -1.7268 -4.1842 15 6 3.2864 -1.5183 -0.6913 16 6 2.8099 -1.8824 0.7370 17 7 2.0300 -0.7140 1.1840 18 6 1.8074 -0.3619 2.4657 19 8 1.1460 0.6261 2.7186 20 6 2.3678 -1.1776 3.5646 21 6 2.1331 -0.8060 4.8863 22 6 2.6632 -1.5770 5.9078 23 6 3.4174 -2.6946 5.5727 24 6 3.6085 -3.0154 4.2263 25 7 3.0888 -2.2569 3.2794 26 8 4.3339 -4.1108 3.8752 27 6 5.1814 -4.6717 4.8832 28 6 4.3767 -4.7795 6.1855 29 8 3.9475 -3.4650 6.5572 30 1 -0.3634 0.5811 0.8476 31 1 -0.3633 0.4435 -0.9270 32 1 -0.3633 -1.0246 0.0794 33 1 0.9646 -2.5643 -1.3612 34 1 -1.5208 -4.0004 -3.0605 35 1 4.1670 -0.8767 -0.6579 36 1 3.4814 -2.4155 -1.2788 37 1 3.6656 -2.0411 1.3933 38 1 2.1803 -2.7717 0.7116 39 1 1.5445 0.0710 5.1117 40 1 2.4978 -1.3126 6.9417 41 1 5.5139 -5.6625 4.5738 42 1 6.0457 -4.0258 5.0374 43 1 3.5081 -5.4191 6.0290 44 1 5.0046 -5.1983 6.9720 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986475971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:02 Heat of formation + Delta-G solvation = -26.847170 kcal Electronic energy + Delta-G solvation = -29271.050974 eV Core-core repulsion = 25190.744538 eV Total energy + Delta-G solvation = -4080.306436 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.82908 -40.06998 -38.58959 -37.74636 -37.16823 -33.97798 -32.63330 -31.80241 -31.26423 -30.55396 -29.34569 -28.45857 -25.61934 -25.14053 -24.43606 -23.34857 -22.67924 -21.66377 -20.25010 -19.21383 -18.54093 -18.14233 -17.78677 -17.34191 -16.58536 -16.12197 -15.80115 -15.42411 -15.01095 -14.85905 -14.74129 -14.59825 -14.03990 -13.83493 -13.64814 -13.51325 -13.38490 -13.06125 -12.74097 -12.43937 -12.29772 -11.92529 -11.81480 -11.50991 -11.40216 -11.17683 -10.85038 -10.77428 -10.52560 -10.49609 -10.15720 -9.99079 -9.84635 -9.77093 -9.56177 -9.23709 -8.90751 -8.58470 -8.07260 -6.97221 -5.76411 -3.05313 0.46835 0.91846 2.28885 2.58186 2.84537 3.31356 3.44493 3.50660 3.52401 3.62838 3.76358 4.04703 4.28955 4.39048 4.45776 4.59605 4.67029 4.76968 4.95092 5.03830 5.06254 5.24203 5.37535 5.41800 5.56875 5.67587 5.76787 5.85095 5.94698 6.00968 6.18611 6.23871 6.30599 6.42890 6.52400 6.54722 6.74056 6.78021 6.81219 6.90756 7.10547 7.41600 7.56407 7.71489 7.96956 8.40835 8.46961 9.53082 10.08451 10.43885 11.45759 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018226 B = 0.003039 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.880683 B = 9210.727513 C = 9900.819436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.107 3.893 3 H 0.062 0.938 4 C 0.170 3.830 5 H 0.074 0.926 6 N -0.709 5.709 7 C -0.237 4.237 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.930 5.930 11 Si 0.904 3.096 12 H -0.280 1.280 13 H -0.293 1.293 14 H -0.292 1.292 15 C -0.150 4.150 16 C 0.107 3.893 17 N -0.579 5.579 18 C 0.579 3.421 19 O -0.541 6.541 20 C 0.099 3.901 21 C -0.108 4.108 22 C -0.081 4.081 23 C 0.025 3.975 24 C 0.259 3.741 25 N -0.433 5.433 26 O -0.290 6.290 27 C 0.026 3.974 28 C 0.017 3.983 29 O -0.301 6.301 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.386 0.614 34 H 0.254 0.746 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.160 0.840 40 H 0.153 0.847 41 H 0.131 0.869 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.260 -1.802 19.742 24.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.001 3.999 3 H 0.080 0.920 4 C 0.058 3.942 5 H 0.092 0.908 6 N -0.348 5.348 7 C -0.368 4.368 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.578 5.578 11 Si 0.736 3.264 12 H -0.205 1.205 13 H -0.220 1.220 14 H -0.219 1.219 15 C -0.189 4.189 16 C -0.015 4.015 17 N -0.310 5.310 18 C 0.366 3.634 19 O -0.419 6.419 20 C -0.039 4.039 21 C -0.129 4.129 22 C -0.106 4.106 23 C -0.023 4.023 24 C 0.077 3.923 25 N -0.156 5.156 26 O -0.199 6.199 27 C -0.051 4.051 28 C -0.058 4.058 29 O -0.214 6.214 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.220 0.780 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.086 0.914 39 H 0.177 0.823 40 H 0.171 0.829 41 H 0.149 0.851 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 13.980 -1.502 18.919 23.572 hybrid contribution -0.712 -0.272 0.342 0.836 sum 13.267 -1.773 19.262 23.456 Atomic orbital electron populations 1.21770 0.93606 1.02867 1.00828 1.22827 0.96255 0.95443 0.85351 0.92034 1.21265 0.88640 0.92261 0.92081 0.90772 1.42358 1.37571 1.14427 1.40470 1.19247 1.10089 0.98516 1.08926 0.91010 1.24721 0.99805 0.96185 0.99972 1.69675 1.37233 1.06497 1.44371 0.86161 0.80781 0.77575 0.81927 1.20526 1.21976 1.21941 1.23221 0.98249 1.01593 0.95844 1.22598 0.96008 0.87846 0.95078 1.48470 1.50077 1.27976 1.04459 1.17240 0.80843 0.84087 0.81267 1.90770 1.40855 1.27101 1.83156 1.20997 0.96986 0.92064 0.93819 1.21917 0.99247 1.00790 0.90945 1.20883 0.95317 0.93205 1.01243 1.19947 0.99433 0.95511 0.87455 1.19458 0.95646 0.90026 0.87189 1.67098 1.09775 1.04074 1.34662 1.86280 1.55384 1.39206 1.39028 1.23763 0.92155 1.01466 0.87690 1.23753 1.00422 0.82825 0.98813 1.86239 1.76000 1.25945 1.33257 0.94178 0.91319 0.91575 0.78019 0.93582 0.91352 0.89668 0.88602 0.91419 0.82285 0.82906 0.85127 0.90006 0.89866 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.05 37.16 0.30 -2.55 16 2 C 0.11 2.06 3.43 -66.94 -0.23 1.83 16 3 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 4 C 0.17 3.32 3.54 -66.09 -0.23 3.09 16 5 H 0.07 1.42 8.06 -51.93 -0.42 1.00 16 6 N -0.71 -16.99 3.84 -51.65 -0.20 -17.18 16 7 C -0.24 -6.28 8.49 -15.06 -0.13 -6.41 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 10 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 11 Si 0.90 22.18 29.55 -169.99 -5.02 17.16 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 15 C -0.15 -2.47 6.69 -24.58 -0.16 -2.63 16 16 C 0.11 1.82 5.86 -2.53 -0.01 1.81 16 17 N -0.58 -10.63 3.06 -164.10 -0.50 -11.13 16 18 C 0.58 10.59 7.62 -12.31 -0.09 10.50 16 19 O -0.54 -10.90 15.42 5.32 0.08 -10.82 16 20 C 0.10 1.54 6.72 -83.07 -0.56 0.98 16 21 C -0.11 -1.35 9.62 -39.08 -0.38 -1.72 16 22 C -0.08 -0.84 10.08 -39.22 -0.40 -1.24 16 23 C 0.03 0.28 6.51 -38.77 -0.25 0.03 16 24 C 0.26 3.41 7.55 -16.93 -0.13 3.29 16 25 N -0.43 -6.62 6.59 -9.70 -0.06 -6.68 16 26 O -0.29 -3.38 10.51 -32.33 -0.34 -3.72 16 27 C 0.03 0.16 7.24 37.40 0.27 0.43 16 28 C 0.02 0.10 7.27 37.40 0.27 0.37 16 29 O -0.30 -2.79 10.41 -31.67 -0.33 -3.12 16 30 H 0.04 0.85 7.02 -51.93 -0.36 0.48 16 31 H 0.07 1.52 7.25 -51.93 -0.38 1.14 16 32 H 0.07 1.60 7.55 -51.93 -0.39 1.21 16 33 H 0.39 10.02 7.84 -40.82 -0.32 9.70 16 34 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.10 1.54 5.88 -51.93 -0.31 1.23 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.16 1.81 7.63 -52.49 -0.40 1.41 16 40 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.13 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 358.47 15.07 5.40 5.40 Total: -1.00 -33.12 358.47 -8.00 -41.12 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -5.93 Total: 8.45 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: -1.83 Total: 7.38 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: -0.04 Total: -61.86 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.59 Total: -17.66 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.12 -8.00 -41.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986475971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.276 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds