Wall clock time and date at job start Tue Mar 31 2020 17:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08989 * 110.88713 * 2 1 4 4 C 1.54909 * 111.00288 * 123.92676 * 2 1 3 5 5 N 1.47743 * 104.83995 * 155.16710 * 4 2 1 6 6 C 1.34780 * 125.81887 * 155.82587 * 5 4 2 7 7 O 1.21552 * 120.00343 * 359.93295 * 6 5 4 8 8 C 1.47890 * 119.99458 * 179.97438 * 6 5 4 9 9 C 1.39287 * 119.60436 * 180.02562 * 8 6 5 10 10 C 1.38529 * 119.12273 * 180.02562 * 9 8 6 11 11 C 1.38921 * 118.53755 * 359.97438 * 10 9 8 12 12 C 1.39724 * 119.42453 * 359.88199 * 11 10 9 13 13 N 1.31992 * 120.37313 * 359.91518 * 12 11 10 14 14 O 1.35991 * 120.44650 * 180.24084 * 12 11 10 15 15 C 1.43151 * 116.69122 * 342.38834 * 14 12 11 16 16 C 1.53455 * 108.31781 * 46.61463 * 15 14 12 17 17 O 1.35781 * 119.58131 * 179.64105 * 11 10 9 18 18 C 1.47020 * 108.53125 * 335.74644 * 5 4 2 19 19 C 1.54324 * 107.39983 * 1.18235 * 18 5 4 20 20 H 1.08999 * 110.72009 * 263.75165 * 19 18 5 21 21 N 1.46501 * 110.72080 * 140.47854 * 19 18 5 22 22 C 1.36940 * 119.99814 * 86.44783 * 21 19 18 23 23 H 1.08003 * 120.00184 * 0.02562 * 22 21 19 24 24 C 1.38813 * 119.99855 * 179.97438 * 22 21 19 25 25 N 1.31615 * 120.00113 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 119.99968 * 0.02562 * 24 22 21 27 27 H 1.48492 * 109.47095 * 89.99883 * 26 24 22 28 28 H 1.48499 * 109.47053 * 209.99659 * 26 24 22 29 29 H 1.48496 * 109.47258 * 329.99581 * 26 24 22 30 30 H 1.08996 * 109.46861 * 183.88429 * 1 2 3 31 31 H 1.08998 * 109.46481 * 303.87842 * 1 2 3 32 32 H 1.09002 * 109.46945 * 63.88062 * 1 2 3 33 33 H 1.09003 * 110.36363 * 273.92036 * 4 2 1 34 34 H 1.08996 * 110.37070 * 36.12875 * 4 2 1 35 35 H 1.07998 * 120.44086 * 0.05449 * 9 8 6 36 36 H 1.08004 * 120.72826 * 179.97438 * 10 9 8 37 37 H 1.09006 * 109.68609 * 166.31621 * 15 14 12 38 38 H 1.08993 * 109.69594 * 286.90272 * 15 14 12 39 39 H 1.09002 * 109.71420 * 59.80235 * 16 15 14 40 40 H 1.08995 * 109.71588 * 180.39090 * 16 15 14 41 41 H 1.09002 * 109.88367 * 241.68734 * 18 5 4 42 42 H 1.09000 * 109.88319 * 120.67352 * 18 5 4 43 43 H 0.97002 * 119.99899 * 266.45892 * 21 19 18 44 44 H 0.96998 * 120.00668 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0853 -0.8072 1.2000 5 7 3.4309 -1.2427 0.7729 6 6 4.4539 -1.5602 1.5910 7 8 4.3098 -1.4984 2.7964 8 6 5.7519 -1.9828 1.0220 9 6 6.8034 -2.3096 1.8751 10 6 8.0150 -2.7037 1.3314 11 6 8.1354 -2.7587 -0.0515 12 6 7.0398 -2.4204 -0.8499 13 7 5.8990 -2.0531 -0.2968 14 8 7.1331 -2.4716 -2.2057 15 6 8.4531 -2.4968 -2.7589 16 6 9.2815 -3.5298 -1.9833 17 8 9.3157 -3.1351 -0.6072 18 6 3.4675 -1.2740 -0.6966 19 6 2.0861 -0.8075 -1.2025 20 1 1.4468 -1.6627 -1.4216 21 7 2.2286 0.0504 -2.3815 22 6 2.3034 -0.5081 -3.6296 23 1 2.2569 -1.5809 -3.7449 24 6 2.4378 0.3049 -4.7468 25 7 2.5092 -0.2318 -5.9464 26 14 2.5175 2.1605 -4.5474 27 1 3.9319 2.5800 -4.3794 28 1 1.9477 2.8128 -5.7537 29 1 1.7360 2.5638 -3.3509 30 1 -0.3633 -1.0253 0.0696 31 1 -0.3632 0.5729 0.8532 32 1 -0.3633 0.4524 -0.9227 33 1 2.1560 -0.1728 2.0836 34 1 1.4508 -1.6698 1.4031 35 1 6.6756 -2.2569 2.9462 36 1 8.8478 -2.9625 1.9686 37 1 8.4052 -2.7791 -3.8106 38 1 8.9105 -1.5121 -2.6627 39 1 8.8195 -4.5131 -2.0721 40 1 10.2952 -3.5627 -2.3823 41 1 3.6650 -2.2891 -1.0410 42 1 4.2429 -0.6010 -1.0625 43 1 2.2701 1.0140 -2.2780 44 1 2.6028 0.3362 -6.7271 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054857871.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:34 Heat of formation + Delta-G solvation = -29.943151 kcal Electronic energy + Delta-G solvation = -29311.020976 eV Core-core repulsion = 25230.580288 eV Total energy + Delta-G solvation = -4080.440688 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.70318 -40.06588 -38.54826 -37.59822 -37.38440 -34.15764 -32.89083 -32.06496 -31.57555 -30.94489 -29.13659 -27.78768 -26.59722 -25.21941 -24.38214 -23.54375 -22.09640 -21.18695 -20.09983 -19.93411 -18.69036 -18.04683 -17.76944 -17.45911 -16.77570 -16.12015 -15.77178 -15.49229 -15.20660 -14.84433 -14.69269 -14.58921 -14.28124 -13.78025 -13.67591 -13.40920 -13.25782 -13.11006 -12.96560 -12.55816 -12.39313 -12.21517 -11.78991 -11.70604 -11.56651 -11.38536 -11.31817 -11.06050 -10.73846 -10.57641 -10.32628 -10.17047 -9.92069 -9.69111 -9.57942 -9.40927 -8.89048 -8.53824 -8.22083 -7.29881 -5.76858 -3.13141 0.51161 1.00941 2.45015 2.68176 2.81662 3.14337 3.37201 3.40567 3.45292 3.75221 3.76584 4.18862 4.34073 4.51645 4.58876 4.62286 4.69406 4.87929 4.92053 5.07561 5.09985 5.15113 5.19938 5.23157 5.47283 5.51975 5.59009 5.70346 5.77196 5.83672 5.87582 5.92658 6.06023 6.18828 6.23036 6.38603 6.42412 6.55629 6.58348 6.71038 6.91009 6.96213 7.66170 7.76252 7.99070 8.27952 8.41945 9.19147 9.91438 10.10095 11.41255 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.009575 B = 0.004727 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.518082 B = 5921.561827 C = 8378.824267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 H 0.081 0.919 4 C 0.114 3.886 5 N -0.592 5.592 6 C 0.585 3.415 7 O -0.548 6.548 8 C 0.091 3.909 9 C -0.110 4.110 10 C -0.084 4.084 11 C 0.028 3.972 12 C 0.264 3.736 13 N -0.426 5.426 14 O -0.282 6.282 15 C 0.025 3.975 16 C 0.017 3.983 17 O -0.301 6.301 18 C 0.092 3.908 19 C 0.177 3.823 20 H 0.073 0.927 21 N -0.735 5.735 22 C -0.242 4.242 23 H 0.092 0.908 24 C 0.009 3.991 25 N -0.932 5.932 26 Si 0.881 3.119 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.276 1.276 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.133 0.867 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.128 0.872 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.363 0.637 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.683 -5.603 12.711 18.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.138 4.138 3 H 0.099 0.901 4 C -0.009 4.009 5 N -0.323 5.323 6 C 0.372 3.628 7 O -0.427 6.427 8 C -0.047 4.047 9 C -0.131 4.131 10 C -0.110 4.110 11 C -0.021 4.021 12 C 0.082 3.918 13 N -0.148 5.148 14 O -0.190 6.190 15 C -0.052 4.052 16 C -0.058 4.058 17 O -0.214 6.214 18 C -0.033 4.033 19 C 0.066 3.934 20 H 0.091 0.909 21 N -0.377 5.377 22 C -0.372 4.372 23 H 0.110 0.890 24 C -0.187 4.187 25 N -0.579 5.579 26 Si 0.711 3.289 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.203 1.203 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.175 0.825 36 H 0.170 0.830 37 H 0.151 0.849 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.146 0.854 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.196 0.804 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.011 -5.555 12.515 17.570 hybrid contribution 1.116 1.078 0.065 1.553 sum 12.126 -4.476 12.580 18.037 Atomic orbital electron populations 1.21625 0.93664 1.01884 1.02008 1.22673 0.96477 0.99661 0.95007 0.90051 1.22377 0.82437 0.98341 0.97729 1.48469 1.11327 1.63478 1.09058 1.17296 0.82161 0.78102 0.85264 1.90763 1.82715 1.55644 1.13600 1.20771 0.95335 1.01162 0.87404 1.21856 0.91131 0.97943 1.02160 1.20840 0.98599 1.00380 0.91154 1.19991 0.86949 1.01467 0.93709 1.19468 0.89883 0.97628 0.84871 1.67115 1.22699 1.12555 1.12480 1.86396 1.29092 1.88425 1.15116 1.23795 0.81343 1.00306 0.99709 1.23780 1.03880 0.98347 0.79782 1.86236 1.27248 1.81067 1.26887 1.23304 1.01165 1.02807 0.76030 1.21335 0.92581 0.93586 0.85913 0.90945 1.42678 1.88705 1.03948 1.02359 1.19069 1.42479 0.93986 0.81637 0.88997 1.24628 1.01853 0.97113 0.95131 1.69694 1.56952 1.34059 0.97242 0.86609 0.77829 0.87544 0.76905 1.21196 1.21775 1.20259 0.92489 0.93089 0.91448 0.90669 0.91075 0.82480 0.82966 0.84877 0.89942 0.89871 0.85445 0.91100 0.89984 0.80374 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 9.31 37.16 0.35 -1.46 16 2 C -0.12 -1.83 3.25 -88.47 -0.29 -2.12 16 3 H 0.08 1.29 8.00 -51.94 -0.42 0.88 16 4 C 0.11 1.68 6.40 -2.35 -0.02 1.67 16 5 N -0.59 -10.10 3.34 -171.36 -0.57 -10.67 16 6 C 0.58 10.08 7.84 -12.31 -0.10 9.99 16 7 O -0.55 -10.07 16.58 5.32 0.09 -9.98 16 8 C 0.09 1.45 6.71 -83.07 -0.56 0.89 16 9 C -0.11 -1.38 9.62 -39.08 -0.38 -1.76 16 10 C -0.08 -0.93 10.08 -39.22 -0.40 -1.33 16 11 C 0.03 0.35 6.51 -38.77 -0.25 0.10 16 12 C 0.26 4.10 7.55 -16.93 -0.13 3.97 16 13 N -0.43 -7.33 6.84 -9.70 -0.07 -7.40 16 14 O -0.28 -4.35 10.51 -32.32 -0.34 -4.69 16 15 C 0.02 0.24 7.24 37.39 0.27 0.51 16 16 C 0.02 0.14 7.26 37.39 0.27 0.41 16 17 O -0.30 -3.25 10.42 -31.66 -0.33 -3.58 16 18 C 0.09 1.73 5.14 -3.06 -0.02 1.72 16 19 C 0.18 3.36 3.06 -66.09 -0.20 3.16 16 20 H 0.07 1.40 8.02 -51.93 -0.42 0.98 16 21 N -0.74 -16.92 4.98 -51.65 -0.26 -17.17 16 22 C -0.24 -6.64 10.46 -15.06 -0.16 -6.80 16 23 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 24 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 25 N -0.93 -28.77 13.97 55.49 0.78 -28.00 16 26 Si 0.88 21.85 27.74 -169.99 -4.71 17.13 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 29 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 30 H 0.06 0.71 8.07 -51.93 -0.42 0.29 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.07 8.05 -51.93 -0.42 0.65 16 34 H 0.07 0.97 7.98 -51.93 -0.41 0.55 16 35 H 0.16 1.73 7.63 -52.49 -0.40 1.33 16 36 H 0.15 1.20 8.06 -52.48 -0.42 0.78 16 37 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 1.40 7.52 -51.93 -0.39 1.01 16 42 H 0.08 1.73 7.29 -51.93 -0.38 1.35 16 43 H 0.36 8.28 5.57 -40.82 -0.23 8.05 16 44 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 362.44 15.07 5.46 5.46 Total: -1.00 -34.42 362.44 -7.68 -42.09 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.03 Total: 7.70 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -1.69 Total: 9.10 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: -0.12 Total: -63.24 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.58 Total: -18.25 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.13 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.42 -7.68 -42.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054857871.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.150 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds