Wall clock time and date at job start Tue Mar 31 2020 17:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08989 * 110.88713 * 2 1 4 4 C 1.54909 * 111.00288 * 123.92676 * 2 1 3 5 5 N 1.47743 * 104.83995 * 155.16710 * 4 2 1 6 6 C 1.34780 * 125.81887 * 155.82587 * 5 4 2 7 7 O 1.21552 * 120.00343 * 359.93295 * 6 5 4 8 8 C 1.47890 * 119.99458 * 179.97438 * 6 5 4 9 9 C 1.39287 * 119.60436 * 180.02562 * 8 6 5 10 10 C 1.38529 * 119.12273 * 180.02562 * 9 8 6 11 11 C 1.38921 * 118.53755 * 359.97438 * 10 9 8 12 12 C 1.39724 * 119.42453 * 359.88199 * 11 10 9 13 13 N 1.31992 * 120.37313 * 359.91518 * 12 11 10 14 14 O 1.35991 * 120.44650 * 180.24084 * 12 11 10 15 15 C 1.43151 * 116.69122 * 342.38834 * 14 12 11 16 16 C 1.53455 * 108.31781 * 46.61463 * 15 14 12 17 17 O 1.35781 * 119.58131 * 179.64105 * 11 10 9 18 18 C 1.47020 * 108.53125 * 335.74644 * 5 4 2 19 19 C 1.54324 * 107.39983 * 1.18235 * 18 5 4 20 20 H 1.08999 * 110.72009 * 263.75165 * 19 18 5 21 21 N 1.46501 * 110.72080 * 140.47854 * 19 18 5 22 22 C 1.36940 * 119.99814 * 86.44783 * 21 19 18 23 23 H 1.08003 * 120.00184 * 0.02562 * 22 21 19 24 24 C 1.38813 * 119.99855 * 179.97438 * 22 21 19 25 25 N 1.31615 * 120.00113 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 119.99968 * 0.02562 * 24 22 21 27 27 H 1.48492 * 109.47095 * 89.99883 * 26 24 22 28 28 H 1.48499 * 109.47053 * 209.99659 * 26 24 22 29 29 H 1.48496 * 109.47258 * 329.99581 * 26 24 22 30 30 H 1.08996 * 109.46861 * 183.88429 * 1 2 3 31 31 H 1.08998 * 109.46481 * 303.87842 * 1 2 3 32 32 H 1.09002 * 109.46945 * 63.88062 * 1 2 3 33 33 H 1.09003 * 110.36363 * 273.92036 * 4 2 1 34 34 H 1.08996 * 110.37070 * 36.12875 * 4 2 1 35 35 H 1.07998 * 120.44086 * 0.05449 * 9 8 6 36 36 H 1.08004 * 120.72826 * 179.97438 * 10 9 8 37 37 H 1.09006 * 109.68609 * 166.31621 * 15 14 12 38 38 H 1.08993 * 109.69594 * 286.90272 * 15 14 12 39 39 H 1.09002 * 109.71420 * 59.80235 * 16 15 14 40 40 H 1.08995 * 109.71588 * 180.39090 * 16 15 14 41 41 H 1.09002 * 109.88367 * 241.68734 * 18 5 4 42 42 H 1.09000 * 109.88319 * 120.67352 * 18 5 4 43 43 H 0.97002 * 119.99899 * 266.45892 * 21 19 18 44 44 H 0.96998 * 120.00668 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0853 -0.8072 1.2000 5 7 3.4309 -1.2427 0.7729 6 6 4.4539 -1.5602 1.5910 7 8 4.3098 -1.4984 2.7964 8 6 5.7519 -1.9828 1.0220 9 6 6.8034 -2.3096 1.8751 10 6 8.0150 -2.7037 1.3314 11 6 8.1354 -2.7587 -0.0515 12 6 7.0398 -2.4204 -0.8499 13 7 5.8990 -2.0531 -0.2968 14 8 7.1331 -2.4716 -2.2057 15 6 8.4531 -2.4968 -2.7589 16 6 9.2815 -3.5298 -1.9833 17 8 9.3157 -3.1351 -0.6072 18 6 3.4675 -1.2740 -0.6966 19 6 2.0861 -0.8075 -1.2025 20 1 1.4468 -1.6627 -1.4216 21 7 2.2286 0.0504 -2.3815 22 6 2.3034 -0.5081 -3.6296 23 1 2.2569 -1.5809 -3.7449 24 6 2.4378 0.3049 -4.7468 25 7 2.5092 -0.2318 -5.9464 26 14 2.5175 2.1605 -4.5474 27 1 3.9319 2.5800 -4.3794 28 1 1.9477 2.8128 -5.7537 29 1 1.7360 2.5638 -3.3509 30 1 -0.3633 -1.0253 0.0696 31 1 -0.3632 0.5729 0.8532 32 1 -0.3633 0.4524 -0.9227 33 1 2.1560 -0.1728 2.0836 34 1 1.4508 -1.6698 1.4031 35 1 6.6756 -2.2569 2.9462 36 1 8.8478 -2.9625 1.9686 37 1 8.4052 -2.7791 -3.8106 38 1 8.9105 -1.5121 -2.6627 39 1 8.8195 -4.5131 -2.0721 40 1 10.2952 -3.5627 -2.3823 41 1 3.6650 -2.2891 -1.0410 42 1 4.2429 -0.6010 -1.0625 43 1 2.2701 1.0140 -2.2780 44 1 2.6028 0.3362 -6.7271 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054857871.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:34 Heat of formation + Delta-G solvation = -55.486566 kcal Electronic energy + Delta-G solvation = -29312.128622 eV Core-core repulsion = 25230.580288 eV Total energy + Delta-G solvation = -4081.548334 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.68070 -41.31811 -39.71522 -38.78047 -38.50877 -35.98033 -34.21950 -33.31634 -32.84941 -32.42606 -30.08587 -29.44787 -27.72841 -26.17001 -25.77467 -25.12680 -23.20966 -22.53054 -21.60407 -21.12318 -19.69061 -19.51861 -19.05411 -18.78568 -17.93958 -17.38135 -16.88276 -16.86137 -16.39141 -16.13033 -15.93714 -15.58991 -15.53078 -15.16870 -14.88558 -14.69512 -14.68270 -14.41290 -14.26671 -14.04647 -13.66174 -13.57065 -13.19761 -12.95371 -12.88756 -12.72409 -12.50627 -12.20581 -12.17332 -12.13574 -11.91365 -11.79639 -11.53598 -11.35357 -11.02640 -10.67276 -10.41501 -9.78446 -9.41238 -9.32605 -7.99837 -5.34157 -0.56242 0.01309 1.37904 1.40660 1.44155 1.47492 1.60286 1.84160 1.95863 2.49238 2.62089 2.87596 3.09925 3.30004 3.42749 3.51928 3.65405 3.76390 3.84918 3.87684 3.96855 4.04222 4.11677 4.14595 4.36268 4.45152 4.49327 4.52805 4.56754 4.63514 4.66290 4.80185 4.91366 5.01586 5.09510 5.12540 5.17395 5.25363 5.33225 5.48504 5.50311 5.79031 5.96500 6.23214 6.35041 6.60833 6.98825 7.08278 7.81913 8.01672 9.21531 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.009575 B = 0.004727 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.518082 B = 5921.561827 C = 8378.824267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.105 4.105 3 H 0.081 0.919 4 C 0.115 3.885 5 N -0.597 5.597 6 C 0.583 3.417 7 O -0.561 6.561 8 C 0.060 3.940 9 C -0.096 4.096 10 C -0.072 4.072 11 C 0.038 3.962 12 C 0.240 3.760 13 N -0.464 5.464 14 O -0.322 6.322 15 C 0.013 3.987 16 C 0.019 3.981 17 O -0.299 6.299 18 C 0.116 3.884 19 C 0.169 3.831 20 H 0.067 0.933 21 N -0.736 5.736 22 C -0.225 4.225 23 H 0.058 0.942 24 C -0.057 4.057 25 N -0.981 5.981 26 Si 0.948 3.052 27 H -0.286 1.286 28 H -0.295 1.295 29 H -0.248 1.248 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.176 0.824 36 H 0.194 0.806 37 H 0.153 0.847 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.171 0.829 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.367 0.633 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.924 -5.035 15.109 20.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.125 4.125 3 H 0.100 0.900 4 C -0.007 4.007 5 N -0.328 5.328 6 C 0.372 3.628 7 O -0.441 6.441 8 C -0.077 4.077 9 C -0.117 4.117 10 C -0.097 4.097 11 C -0.011 4.011 12 C 0.057 3.943 13 N -0.187 5.187 14 O -0.232 6.232 15 C -0.062 4.062 16 C -0.055 4.055 17 O -0.212 6.212 18 C -0.010 4.010 19 C 0.059 3.941 20 H 0.085 0.915 21 N -0.378 5.378 22 C -0.356 4.356 23 H 0.076 0.924 24 C -0.248 4.248 25 N -0.631 5.631 26 Si 0.775 3.225 27 H -0.213 1.213 28 H -0.222 1.222 29 H -0.173 1.173 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.194 0.806 36 H 0.211 0.789 37 H 0.170 0.830 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.188 0.812 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.201 0.799 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.246 -4.995 14.977 19.980 hybrid contribution 0.848 0.753 -0.697 1.331 sum 13.094 -4.241 14.280 19.833 Atomic orbital electron populations 1.21606 0.91712 1.02919 1.02462 1.22600 0.97965 0.98979 0.92923 0.90049 1.22519 0.81477 0.99063 0.97637 1.48481 1.12412 1.63867 1.08020 1.17569 0.82617 0.77540 0.85124 1.90736 1.83134 1.56386 1.13851 1.20762 0.95791 1.03554 0.87621 1.22083 0.90686 0.96334 1.02620 1.21265 0.99015 0.98631 0.90801 1.20086 0.86652 1.00220 0.94186 1.19663 0.90507 0.98893 0.85217 1.66906 1.24430 1.13879 1.13484 1.86322 1.32486 1.88768 1.15638 1.24168 0.79688 1.01384 1.00914 1.24083 1.05900 0.97527 0.77994 1.86242 1.25973 1.80597 1.28400 1.22759 0.99910 1.00883 0.77450 1.21504 0.92802 0.93735 0.86024 0.91509 1.42595 1.88754 1.04469 1.01970 1.18975 1.40495 0.92574 0.83580 0.92448 1.25383 1.02577 1.02142 0.94714 1.69870 1.59230 1.35853 0.98187 0.85518 0.77920 0.81375 0.77640 1.21255 1.22157 1.17284 0.91610 0.90220 0.92987 0.89338 0.89498 0.80620 0.78932 0.82974 0.89676 0.89407 0.81210 0.93080 0.92522 0.79943 0.93420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 9.31 71.99 0.67 -2.51 16 2 C -0.10 -3.09 3.25 -9.40 -0.03 -3.12 16 3 H 0.08 2.43 8.00 -2.39 -0.02 2.41 16 4 C 0.11 3.21 6.40 86.79 0.56 3.76 16 5 N -0.60 -20.36 3.34 -814.32 -2.72 -23.07 16 6 C 0.58 20.05 7.84 86.80 0.68 20.73 16 7 O -0.56 -20.02 16.58 -3.88 -0.06 -20.08 16 8 C 0.06 1.91 6.71 41.79 0.28 2.19 16 9 C -0.10 -2.28 9.62 22.59 0.22 -2.06 16 10 C -0.07 -1.41 10.08 22.50 0.23 -1.19 16 11 C 0.04 0.92 6.51 22.79 0.15 1.07 16 12 C 0.24 7.63 7.55 85.03 0.64 8.27 16 13 N -0.46 -16.62 6.84 -297.43 -2.03 -18.66 16 14 O -0.32 -10.41 10.51 -81.40 -0.86 -11.27 16 15 C 0.01 0.26 7.24 72.13 0.52 0.78 16 16 C 0.02 0.26 7.26 72.13 0.52 0.78 16 17 O -0.30 -5.74 10.42 -79.04 -0.82 -6.56 16 18 C 0.12 4.52 5.14 86.73 0.45 4.97 16 19 C 0.17 6.50 3.06 46.18 0.14 6.64 16 20 H 0.07 2.64 8.02 -2.39 -0.02 2.63 16 21 N -0.74 -34.22 4.98 -317.32 -1.58 -35.80 16 22 C -0.23 -12.79 10.46 84.03 0.88 -11.92 16 23 H 0.06 3.60 8.06 -2.91 -0.02 3.57 16 24 C -0.06 -3.33 5.50 84.86 0.47 -2.86 16 25 N -0.98 -62.72 13.97 21.65 0.30 -62.42 16 26 Si 0.95 45.57 27.74 68.60 1.90 47.48 16 27 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 28 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 29 H -0.25 -10.68 6.52 99.48 0.65 -10.03 16 30 H 0.06 1.50 8.07 -2.39 -0.02 1.48 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.45 8.14 -2.39 -0.02 1.44 16 33 H 0.09 2.30 8.05 -2.39 -0.02 2.28 16 34 H 0.09 2.18 7.98 -2.39 -0.02 2.16 16 35 H 0.18 3.44 7.63 -2.91 -0.02 3.42 16 36 H 0.19 2.19 8.06 -2.91 -0.02 2.16 16 37 H 0.15 2.15 8.14 -2.38 -0.02 2.13 16 38 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.17 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.05 2.17 7.52 -2.39 -0.02 2.15 16 42 H 0.06 2.51 7.29 -2.39 -0.02 2.49 16 43 H 0.37 16.45 5.57 -92.71 -0.52 15.93 16 44 H 0.26 15.67 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -78.33 362.44 0.96 -77.37 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 0.46 Total: 27.47 kcal Atomic # 6 Polarization: 19.17 SS G_CDS: 6.37 Total: 25.54 kcal Atomic # 7 Polarization: -133.92 SS G_CDS: -6.03 Total: -139.95 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -1.74 Total: -37.91 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.90 Total: 47.48 kcal Total: -78.33 0.96 -77.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054857871.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.883 kcal (2) G-P(sol) polarization free energy of solvation -78.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds