Wall clock time and date at job start Tue Mar 31 2020 17:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.52999 * 109.47054 * 174.99886 * 4 2 1 6 6 H 1.08997 * 109.47369 * 304.99623 * 5 4 2 7 7 C 1.52998 * 109.47162 * 184.99817 * 5 4 2 8 8 N 1.46503 * 109.47223 * 64.99930 * 5 4 2 9 9 C 1.36933 * 120.00054 * 204.99988 * 8 5 4 10 10 H 1.08008 * 119.99936 * 359.97438 * 9 8 5 11 11 C 1.38810 * 120.00418 * 179.97438 * 9 8 5 12 12 N 1.31622 * 119.99489 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00450 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47091 * 90.00208 * 13 11 9 15 15 H 1.48498 * 109.47229 * 210.00356 * 13 11 9 16 16 H 1.48501 * 109.47236 * 329.99999 * 13 11 9 17 17 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 18 18 C 1.34768 * 120.00056 * 275.00296 * 17 2 1 19 19 O 1.21571 * 120.00118 * 359.97438 * 18 17 2 20 20 C 1.47712 * 119.99934 * 179.97438 * 18 17 2 21 21 C 1.39990 * 119.96874 * 359.97438 * 20 18 17 22 22 C 1.36599 * 120.46468 * 180.02562 * 21 20 18 23 23 C 1.38802 * 120.20937 * 359.94917 * 22 21 20 24 24 O 1.35175 * 133.64939 * 180.02562 * 23 22 21 25 25 C 1.34398 * 108.24626 * 180.02562 * 24 23 22 26 26 O 1.35173 * 124.90719 * 180.02562 * 25 24 23 27 27 N 1.30581 * 110.17925 * 359.97438 * 25 24 23 28 28 C 1.36215 * 108.68419 * 0.02562 * 27 25 24 29 29 C 1.39222 * 133.67383 * 180.29406 * 28 27 25 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 34 34 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 35 35 H 1.08996 * 109.47643 * 180.02562 * 7 5 4 36 36 H 1.09001 * 109.47299 * 300.00122 * 7 5 4 37 37 H 1.08999 * 109.47267 * 59.99499 * 7 5 4 38 38 H 0.97000 * 119.99900 * 24.99911 * 8 5 4 39 39 H 0.97001 * 120.00119 * 179.97438 * 12 11 9 40 40 H 0.97001 * 119.99547 * 95.00125 * 17 2 1 41 41 H 1.08003 * 119.76346 * 359.97438 * 21 20 18 42 42 H 1.08003 * 119.89312 * 179.97438 * 22 21 20 43 43 H 0.96704 * 113.99723 * 269.96698 * 26 25 24 44 44 H 1.08005 * 120.25977 * 359.92439 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 1 3.8570 0.4359 -1.2679 7 6 4.0645 -1.2248 -2.6241 8 7 4.1537 -1.3341 -0.1825 9 6 5.3943 -0.9855 0.2805 10 1 5.9389 -0.1793 -0.1885 11 6 5.9521 -1.6682 1.3527 12 7 5.2887 -2.6511 1.9239 13 14 7.6448 -1.1932 1.9839 14 1 7.5071 -0.1552 3.0370 15 1 8.3148 -2.3900 2.5530 16 1 8.4584 -0.6566 0.8634 17 7 2.0184 -0.6906 1.1961 18 6 2.1471 -0.0184 2.3570 19 8 1.8583 1.1613 2.4116 20 6 2.6390 -0.7149 3.5632 21 6 2.9708 -2.0734 3.4998 22 6 3.4262 -2.7276 4.6091 23 6 3.5654 -2.0493 5.8120 24 8 3.9795 -2.4135 7.0461 25 6 3.9117 -1.3368 7.8476 26 8 4.2492 -1.3244 9.1565 27 7 3.4737 -0.3043 7.1788 28 6 3.2371 -0.6858 5.8928 29 6 2.7775 -0.0180 4.7610 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.7517 -1.7714 -1.2057 34 1 1.6054 -0.2616 -2.1371 35 1 5.1508 -1.1483 -2.6699 36 1 3.7723 -2.2739 -2.6701 37 1 3.6263 -0.6885 -3.4658 38 1 3.6648 -2.0584 0.2384 39 1 5.6786 -3.1285 2.6729 40 1 2.2491 -1.6318 1.1525 41 1 2.8652 -2.6081 2.5674 42 1 3.6791 -3.7759 4.5498 43 1 3.5176 -1.5333 9.7533 44 1 2.5268 1.0313 4.8124 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134651522.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:14 Heat of formation + Delta-G solvation = -15.483005 kcal Electronic energy + Delta-G solvation = -29686.148267 eV Core-core repulsion = 25606.334618 eV Total energy + Delta-G solvation = -4079.813649 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -43.03988 -39.65095 -38.17160 -37.28541 -36.52807 -34.46741 -34.23212 -32.36279 -31.03880 -30.22335 -29.00097 -28.41178 -26.37702 -24.28018 -23.73880 -23.00280 -21.78674 -21.25467 -20.37295 -19.92355 -19.26914 -17.94924 -17.31703 -17.18641 -16.98177 -15.99114 -15.48833 -14.96909 -14.81135 -14.47482 -14.12856 -13.94176 -13.84660 -13.64657 -13.39254 -13.00530 -12.76706 -12.59464 -12.47135 -12.21372 -12.04562 -11.89575 -11.77812 -11.69923 -11.17362 -11.13123 -10.98680 -10.85896 -10.77122 -10.41416 -10.30673 -10.28458 -9.96273 -9.74241 -9.39167 -9.02892 -8.56875 -8.33491 -8.15191 -6.99951 -5.90178 -3.11489 0.89618 1.15976 2.03990 2.52292 3.31021 3.40801 3.46029 3.47048 3.50109 3.80626 4.25821 4.54421 4.71178 4.99473 5.07544 5.27351 5.35111 5.38036 5.45480 5.49736 5.57318 5.60342 5.66018 5.82842 5.88627 5.93393 5.97453 6.10021 6.20018 6.28696 6.29568 6.33551 6.37477 6.51372 6.55065 6.65617 6.67181 6.81164 6.86071 7.00674 7.02311 7.11554 7.64525 7.65360 8.11758 8.31256 8.81848 9.43549 9.94981 10.31110 11.32449 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011939 B = 0.004700 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.764195 B = 5956.404916 C = 7567.771951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.150 3.850 3 H 0.085 0.915 4 C -0.134 4.134 5 C 0.168 3.832 6 H 0.049 0.951 7 C -0.163 4.163 8 N -0.716 5.716 9 C -0.220 4.220 10 H 0.067 0.933 11 C -0.008 4.008 12 N -0.928 5.928 13 Si 0.897 3.103 14 H -0.291 1.291 15 H -0.293 1.293 16 H -0.284 1.284 17 N -0.692 5.692 18 C 0.575 3.425 19 O -0.557 6.557 20 C -0.128 4.128 21 C 0.010 3.990 22 C -0.096 4.096 23 C 0.042 3.958 24 O -0.229 6.229 25 C 0.395 3.605 26 O -0.410 6.410 27 N -0.454 5.454 28 C 0.000 4.000 29 C 0.000 4.000 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.035 0.965 38 H 0.376 0.624 39 H 0.255 0.745 40 H 0.403 0.597 41 H 0.155 0.845 42 H 0.138 0.862 43 H 0.414 0.586 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.047 -2.020 3.260 10.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.045 3.955 3 H 0.103 0.897 4 C -0.173 4.173 5 C 0.059 3.941 6 H 0.067 0.933 7 C -0.223 4.223 8 N -0.359 5.359 9 C -0.351 4.351 10 H 0.085 0.915 11 C -0.203 4.203 12 N -0.577 5.577 13 Si 0.729 3.271 14 H -0.219 1.219 15 H -0.219 1.219 16 H -0.210 1.210 17 N -0.344 5.344 18 C 0.363 3.637 19 O -0.438 6.438 20 C -0.133 4.133 21 C -0.010 4.010 22 C -0.115 4.115 23 C -0.008 4.008 24 O -0.123 6.123 25 C 0.144 3.856 26 O -0.217 6.217 27 N -0.197 5.197 28 C -0.112 4.112 29 C -0.020 4.020 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.211 0.789 39 H 0.065 0.935 40 H 0.242 0.758 41 H 0.173 0.827 42 H 0.156 0.844 43 H 0.273 0.727 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.571 -0.433 3.394 10.164 hybrid contribution 1.147 -1.342 0.744 1.916 sum -8.424 -1.774 4.138 9.552 Atomic orbital electron populations 1.22212 0.96151 1.01691 1.02058 1.20833 0.92566 0.97806 0.84294 0.89723 1.22219 0.97759 1.00638 0.96647 1.20304 0.89722 0.95965 0.88158 0.93300 1.22410 1.01551 1.00336 0.98038 1.42456 1.18693 1.39874 1.34828 1.19209 0.93059 1.12734 1.10112 0.91469 1.24462 0.98315 0.98732 0.98814 1.69475 1.37693 1.24491 1.26047 0.86326 0.84671 0.77341 0.78769 1.21894 1.21903 1.21033 1.45857 1.65623 1.14342 1.08569 1.17799 0.76796 0.86043 0.83056 1.90704 1.51924 1.15594 1.85533 1.19763 1.05205 0.94673 0.93661 1.20937 0.90334 0.92602 0.97130 1.19447 1.03750 1.01127 0.87200 1.20335 1.00528 0.95236 0.84674 1.84420 1.70234 1.38192 1.19422 1.22303 0.96616 0.80437 0.86203 1.84919 1.38878 1.90084 1.07821 1.70936 1.17519 1.26885 1.04361 1.19289 1.07705 0.92236 0.91930 1.20255 0.93708 1.00046 0.87947 0.92291 0.92759 0.92079 0.91696 0.90688 0.92867 0.93598 0.94551 0.78912 0.93515 0.75791 0.82719 0.84429 0.72685 0.83847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.48 37.16 0.35 -1.67 16 2 C 0.15 2.25 2.57 -67.93 -0.17 2.07 16 3 H 0.08 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.13 -1.84 4.43 -26.73 -0.12 -1.96 16 5 C 0.17 2.92 2.89 -67.93 -0.20 2.72 16 6 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 7 C -0.16 -2.63 9.49 37.16 0.35 -2.28 16 8 N -0.72 -14.94 3.84 -53.43 -0.21 -15.15 16 9 C -0.22 -5.44 9.93 -15.06 -0.15 -5.59 16 10 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 11 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 12 N -0.93 -22.63 10.72 55.49 0.59 -22.03 16 13 Si 0.90 21.84 29.55 -169.99 -5.02 16.81 16 14 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 N -0.69 -11.58 3.75 -54.79 -0.21 -11.78 16 18 C 0.58 11.08 7.73 -12.39 -0.10 10.98 16 19 O -0.56 -12.03 15.99 5.30 0.08 -11.95 16 20 C -0.13 -2.40 5.87 -104.99 -0.62 -3.01 16 21 C 0.01 0.17 7.76 -39.52 -0.31 -0.14 16 22 C -0.10 -1.63 9.99 -39.97 -0.40 -2.03 16 23 C 0.04 0.76 7.42 -38.53 -0.29 0.47 16 24 O -0.23 -3.82 10.78 -20.30 -0.22 -4.03 16 25 C 0.39 6.11 9.53 52.23 0.50 6.61 16 26 O -0.41 -4.56 13.62 -40.51 -0.55 -5.11 16 27 N -0.45 -8.08 11.38 -12.82 -0.15 -8.23 16 28 C 0.00 0.00 7.22 -84.71 -0.61 -0.61 16 29 C 0.00 0.01 9.64 -38.83 -0.37 -0.37 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.38 7.83 5.70 -40.82 -0.23 7.60 16 39 H 0.25 6.31 8.31 -40.82 -0.34 5.97 16 40 H 0.40 6.59 4.51 -40.82 -0.18 6.41 16 41 H 0.16 2.64 5.82 -52.48 -0.31 2.34 16 42 H 0.14 2.09 8.06 -52.48 -0.42 1.66 16 43 H 0.41 1.84 9.06 45.56 0.41 2.25 16 44 H 0.14 2.66 7.64 -52.48 -0.40 2.26 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -30.26 368.16 -7.22 -37.48 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -4.87 Total: 13.55 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -2.22 Total: 4.89 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.04 Total: -57.19 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.69 Total: -21.09 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.26 -7.22 -37.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134651522.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.996 kcal (2) G-P(sol) polarization free energy of solvation -30.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds