Wall clock time and date at job start Tue Mar 31 2020 17:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.52999 * 109.47054 * 174.99886 * 4 2 1 6 6 H 1.08997 * 109.47369 * 304.99623 * 5 4 2 7 7 C 1.52998 * 109.47162 * 184.99817 * 5 4 2 8 8 N 1.46503 * 109.47223 * 64.99930 * 5 4 2 9 9 C 1.36933 * 120.00054 * 204.99988 * 8 5 4 10 10 H 1.08008 * 119.99936 * 359.97438 * 9 8 5 11 11 C 1.38810 * 120.00418 * 179.97438 * 9 8 5 12 12 N 1.31622 * 119.99489 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00450 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47091 * 90.00208 * 13 11 9 15 15 H 1.48498 * 109.47229 * 210.00356 * 13 11 9 16 16 H 1.48501 * 109.47236 * 329.99999 * 13 11 9 17 17 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 18 18 C 1.34768 * 120.00056 * 275.00296 * 17 2 1 19 19 O 1.21571 * 120.00118 * 359.97438 * 18 17 2 20 20 C 1.47712 * 119.99934 * 179.97438 * 18 17 2 21 21 C 1.39990 * 119.96874 * 359.97438 * 20 18 17 22 22 C 1.36599 * 120.46468 * 180.02562 * 21 20 18 23 23 C 1.38802 * 120.20937 * 359.94917 * 22 21 20 24 24 O 1.35175 * 133.64939 * 180.02562 * 23 22 21 25 25 C 1.34398 * 108.24626 * 180.02562 * 24 23 22 26 26 O 1.35173 * 124.90719 * 180.02562 * 25 24 23 27 27 N 1.30581 * 110.17925 * 359.97438 * 25 24 23 28 28 C 1.36215 * 108.68419 * 0.02562 * 27 25 24 29 29 C 1.39222 * 133.67383 * 180.29406 * 28 27 25 30 30 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 33 33 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 34 34 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 35 35 H 1.08996 * 109.47643 * 180.02562 * 7 5 4 36 36 H 1.09001 * 109.47299 * 300.00122 * 7 5 4 37 37 H 1.08999 * 109.47267 * 59.99499 * 7 5 4 38 38 H 0.97000 * 119.99900 * 24.99911 * 8 5 4 39 39 H 0.97001 * 120.00119 * 179.97438 * 12 11 9 40 40 H 0.97001 * 119.99547 * 95.00125 * 17 2 1 41 41 H 1.08003 * 119.76346 * 359.97438 * 21 20 18 42 42 H 1.08003 * 119.89312 * 179.97438 * 22 21 20 43 43 H 0.96704 * 113.99723 * 269.96698 * 26 25 24 44 44 H 1.08005 * 120.25977 * 359.92439 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 1 3.8570 0.4359 -1.2679 7 6 4.0645 -1.2248 -2.6241 8 7 4.1537 -1.3341 -0.1825 9 6 5.3943 -0.9855 0.2805 10 1 5.9389 -0.1793 -0.1885 11 6 5.9521 -1.6682 1.3527 12 7 5.2887 -2.6511 1.9239 13 14 7.6448 -1.1932 1.9839 14 1 7.5071 -0.1552 3.0370 15 1 8.3148 -2.3900 2.5530 16 1 8.4584 -0.6566 0.8634 17 7 2.0184 -0.6906 1.1961 18 6 2.1471 -0.0184 2.3570 19 8 1.8583 1.1613 2.4116 20 6 2.6390 -0.7149 3.5632 21 6 2.9708 -2.0734 3.4998 22 6 3.4262 -2.7276 4.6091 23 6 3.5654 -2.0493 5.8120 24 8 3.9795 -2.4135 7.0461 25 6 3.9117 -1.3368 7.8476 26 8 4.2492 -1.3244 9.1565 27 7 3.4737 -0.3043 7.1788 28 6 3.2371 -0.6858 5.8928 29 6 2.7775 -0.0180 4.7610 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.7517 -1.7714 -1.2057 34 1 1.6054 -0.2616 -2.1371 35 1 5.1508 -1.1483 -2.6699 36 1 3.7723 -2.2739 -2.6701 37 1 3.6263 -0.6885 -3.4658 38 1 3.6648 -2.0584 0.2384 39 1 5.6786 -3.1285 2.6729 40 1 2.2491 -1.6318 1.1525 41 1 2.8652 -2.6081 2.5674 42 1 3.6791 -3.7759 4.5498 43 1 3.5176 -1.5333 9.7533 44 1 2.5268 1.0313 4.8124 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134651522.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:13 Heat of formation + Delta-G solvation = -38.748718 kcal Electronic energy + Delta-G solvation = -29687.157144 eV Core-core repulsion = 25606.334618 eV Total energy + Delta-G solvation = -4080.822526 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.36015 -41.07963 -39.29524 -38.55396 -37.97558 -35.80809 -35.74972 -34.00266 -32.46164 -31.61159 -30.49055 -29.84280 -27.54615 -25.63991 -25.51770 -24.29645 -23.11993 -22.59361 -21.71087 -21.33536 -20.41048 -19.29773 -19.06419 -18.58337 -18.28295 -17.35633 -16.82714 -16.63294 -16.03567 -15.93494 -15.56683 -15.44218 -15.36911 -15.05854 -14.85955 -14.30662 -14.16987 -13.93955 -13.63076 -13.54974 -13.44712 -13.26504 -13.13236 -12.91288 -12.75604 -12.57774 -12.47177 -12.40749 -12.22369 -12.13617 -11.67250 -11.64756 -11.55152 -11.36193 -10.91141 -10.84124 -10.01739 -9.71077 -9.52127 -8.73619 -7.82648 -4.99379 -0.40639 -0.25071 0.82778 1.20978 1.41748 1.48620 1.50169 1.85871 2.16133 2.51526 2.61438 2.82727 3.34098 3.53257 3.73306 3.88124 3.93435 4.02879 4.07205 4.17960 4.22762 4.27113 4.45033 4.63051 4.65849 4.74815 4.87917 4.89788 4.93526 4.97521 4.98930 5.13318 5.19096 5.21211 5.26993 5.28583 5.43388 5.47368 5.50241 5.66804 5.68634 5.79644 6.20254 6.34416 6.43105 6.70906 7.37115 7.52861 8.21537 8.51314 9.38044 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011939 B = 0.004700 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.764195 B = 5956.404916 C = 7567.771951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.145 3.855 3 H 0.057 0.943 4 C -0.120 4.120 5 C 0.161 3.839 6 H 0.028 0.972 7 C -0.154 4.154 8 N -0.717 5.717 9 C -0.222 4.222 10 H 0.051 0.949 11 C -0.037 4.037 12 N -0.922 5.922 13 Si 0.924 3.076 14 H -0.313 1.313 15 H -0.296 1.296 16 H -0.285 1.285 17 N -0.681 5.681 18 C 0.568 3.432 19 O -0.590 6.590 20 C -0.136 4.136 21 C 0.008 3.992 22 C -0.089 4.089 23 C 0.032 3.968 24 O -0.228 6.228 25 C 0.419 3.581 26 O -0.401 6.401 27 N -0.485 5.485 28 C -0.009 4.009 29 C -0.017 4.017 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.026 0.974 36 H 0.050 0.950 37 H 0.067 0.933 38 H 0.377 0.623 39 H 0.251 0.749 40 H 0.406 0.594 41 H 0.160 0.840 42 H 0.159 0.841 43 H 0.445 0.555 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.226 -3.464 2.788 12.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.040 3.960 3 H 0.076 0.924 4 C -0.158 4.158 5 C 0.053 3.947 6 H 0.046 0.954 7 C -0.213 4.213 8 N -0.360 5.360 9 C -0.354 4.354 10 H 0.069 0.931 11 C -0.232 4.232 12 N -0.572 5.572 13 Si 0.758 3.242 14 H -0.243 1.243 15 H -0.222 1.222 16 H -0.211 1.211 17 N -0.333 5.333 18 C 0.356 3.644 19 O -0.473 6.473 20 C -0.140 4.140 21 C -0.011 4.011 22 C -0.108 4.108 23 C -0.018 4.018 24 O -0.123 6.123 25 C 0.169 3.831 26 O -0.214 6.214 27 N -0.229 5.229 28 C -0.120 4.120 29 C -0.037 4.037 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.127 0.873 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.212 0.788 39 H 0.060 0.940 40 H 0.246 0.754 41 H 0.178 0.822 42 H 0.176 0.824 43 H 0.311 0.689 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.788 -1.902 2.913 11.335 hybrid contribution 1.533 -0.857 1.023 2.032 sum -9.256 -2.759 3.936 10.429 Atomic orbital electron populations 1.22117 0.93660 1.02944 1.02362 1.21007 0.94459 0.96382 0.84105 0.92450 1.22139 0.94698 1.01806 0.97153 1.20497 0.92216 0.94414 0.87618 0.95431 1.22266 0.99971 1.00937 0.98172 1.42460 1.17586 1.40132 1.35848 1.19184 0.94423 1.11961 1.09880 0.93136 1.24700 0.99138 0.99678 0.99673 1.69490 1.37372 1.24381 1.25938 0.85917 0.84338 0.76231 0.77723 1.24273 1.22221 1.21110 1.45891 1.64568 1.14345 1.08446 1.17996 0.76693 0.85785 0.83903 1.90676 1.53596 1.16903 1.86097 1.19842 1.05453 0.95291 0.93447 1.20946 0.90524 0.92001 0.97608 1.19673 1.02496 1.01978 0.86635 1.20454 1.01003 0.95021 0.85349 1.84439 1.70215 1.38524 1.19098 1.22530 0.93654 0.79628 0.87331 1.84902 1.40547 1.89860 1.06056 1.70947 1.19769 1.27921 1.04273 1.19400 1.07537 0.92791 0.92254 1.20252 0.94957 0.99929 0.88561 0.94232 0.90965 0.89570 0.90045 0.87290 0.95431 0.93081 0.91443 0.78809 0.93952 0.75420 0.82235 0.82388 0.68895 0.84650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.48 71.98 0.68 -2.77 16 2 C 0.14 4.14 2.57 44.99 0.12 4.26 16 3 H 0.06 1.98 7.58 -2.39 -0.02 1.97 16 4 C -0.12 -2.94 4.43 30.60 0.14 -2.80 16 5 C 0.16 5.36 2.89 44.99 0.13 5.49 16 6 H 0.03 1.04 8.08 -2.39 -0.02 1.02 16 7 C -0.15 -4.61 9.49 71.98 0.68 -3.93 16 8 N -0.72 -29.48 3.84 -322.94 -1.24 -30.72 16 9 C -0.22 -11.02 9.93 84.03 0.83 -10.19 16 10 H 0.05 2.64 7.83 -2.91 -0.02 2.62 16 11 C -0.04 -1.87 5.50 84.86 0.47 -1.41 16 12 N -0.92 -44.40 10.72 21.65 0.23 -44.16 16 13 Si 0.92 45.11 29.55 68.60 2.03 47.14 16 14 H -0.31 -16.35 7.11 99.48 0.71 -15.64 16 15 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 16 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 17 N -0.68 -22.53 3.75 -445.54 -1.67 -24.20 16 18 C 0.57 22.37 7.73 86.75 0.67 23.04 16 19 O -0.59 -26.42 15.99 -3.94 -0.06 -26.48 16 20 C -0.14 -5.18 5.87 -20.10 -0.12 -5.30 16 21 C 0.01 0.29 7.76 22.31 0.17 0.47 16 22 C -0.09 -2.94 9.99 22.02 0.22 -2.72 16 23 C 0.03 1.12 7.42 22.95 0.17 1.29 16 24 O -0.23 -7.28 10.78 10.05 0.11 -7.17 16 25 C 0.42 12.31 9.53 130.43 1.24 13.55 16 26 O -0.40 -7.83 13.62 -62.25 -0.85 -8.68 16 27 N -0.49 -17.12 11.38 -422.85 -4.81 -21.93 16 28 C -0.01 -0.34 7.22 39.24 0.28 -0.06 16 29 C -0.02 -0.66 9.64 22.75 0.22 -0.44 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 34 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.38 15.25 5.70 -92.71 -0.53 14.72 16 39 H 0.25 12.20 8.31 -92.71 -0.77 11.43 16 40 H 0.41 12.88 4.51 -92.71 -0.42 12.47 16 41 H 0.16 5.32 5.82 -2.91 -0.02 5.30 16 42 H 0.16 4.50 8.06 -2.91 -0.02 4.48 16 43 H 0.45 2.46 9.06 -74.05 -0.67 1.79 16 44 H 0.14 5.34 7.64 -2.91 -0.02 5.32 16 Total: -1.00 -66.53 368.16 -0.90 -67.43 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: -0.55 Total: 30.29 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: 5.91 Total: 18.49 kcal Atomic # 7 Polarization: -113.52 SS G_CDS: -7.49 Total: -121.01 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -0.80 Total: -42.33 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -66.53 -0.90 -67.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134651522.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.680 kcal (2) G-P(sol) polarization free energy of solvation -66.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds