Wall clock time and date at job start Tue Mar 31 2020 17:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46965 * 2 1 4 4 C 1.52999 * 109.46645 * 240.00521 * 2 1 3 5 5 C 1.53008 * 109.46593 * 175.00100 * 4 2 1 6 6 C 1.53002 * 109.47094 * 179.97438 * 5 4 2 7 7 N 1.46495 * 109.47350 * 179.97438 * 6 5 4 8 8 C 1.36935 * 120.00308 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00024 * 0.02562 * 8 7 6 10 10 C 1.38810 * 120.00033 * 179.97438 * 8 7 6 11 11 N 1.31619 * 120.00347 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99869 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47141 * 60.00469 * 12 10 8 14 14 H 1.48508 * 109.47097 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47351 * 300.00297 * 12 10 8 16 16 N 1.46499 * 109.47136 * 120.00350 * 2 1 3 17 17 C 1.34777 * 119.99665 * 275.27771 * 16 2 1 18 18 O 1.21683 * 120.00206 * 359.72112 * 17 16 2 19 19 C 1.46833 * 119.99617 * 179.72433 * 17 16 2 20 20 C 1.42400 * 128.41647 * 359.67235 * 19 17 16 21 21 N 1.29890 * 106.48286 * 179.89205 * 20 19 17 22 22 O 1.20730 * 112.92135 * 0.40618 * 21 20 19 23 23 C 1.34452 * 111.90453 * 359.73543 * 22 21 20 24 24 C 1.46434 * 127.24084 * 179.97438 * 23 22 21 25 25 C 1.36669 * 125.99319 * 359.74003 * 24 23 22 26 26 C 1.40440 * 106.70119 * 179.90797 * 25 24 23 27 27 C 1.35075 * 107.12244 * 0.35094 * 26 25 24 28 28 O 1.34088 * 108.77891 * 359.78321 * 27 26 25 29 29 H 1.09006 * 109.47500 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47488 * 299.99925 * 1 2 3 31 31 H 1.09005 * 109.47368 * 59.99853 * 1 2 3 32 32 H 1.08998 * 109.47257 * 294.99561 * 4 2 1 33 33 H 1.08993 * 109.47436 * 55.00179 * 4 2 1 34 34 H 1.08998 * 109.46879 * 299.99693 * 5 4 2 35 35 H 1.09001 * 109.47112 * 59.99648 * 5 4 2 36 36 H 1.09003 * 109.47046 * 300.00184 * 6 5 4 37 37 H 1.09002 * 109.46848 * 59.99557 * 6 5 4 38 38 H 0.97010 * 119.99841 * 0.02562 * 7 6 5 39 39 H 0.96999 * 120.00653 * 179.97438 * 11 10 8 40 40 H 0.97001 * 119.99790 * 94.99484 * 16 2 1 41 41 H 1.07997 * 126.75196 * 0.02562 * 20 19 17 42 42 H 1.08001 * 126.64990 * 0.02562 * 25 24 23 43 43 H 1.07996 * 126.44009 * 180.16894 * 26 25 24 44 44 H 1.08002 * 125.61292 * 179.73889 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 6 4.0748 -1.3349 -2.5627 7 7 5.5348 -1.2310 -2.6248 8 6 6.2187 -1.8059 -3.6625 9 1 5.6817 -2.3356 -4.4355 10 6 7.6020 -1.7070 -3.7216 11 7 8.2564 -1.0611 -2.7798 12 14 8.5348 -2.4907 -5.1376 13 1 8.0777 -1.8975 -6.4199 14 1 9.9895 -2.2446 -4.9685 15 1 8.2788 -3.9534 -5.1497 16 7 2.0183 -0.6907 1.1961 17 6 2.1417 -0.0197 2.3585 18 8 1.8523 1.1610 2.4132 19 6 2.6254 -0.7135 3.5588 20 6 3.0051 -2.0787 3.6991 21 7 3.3659 -2.2355 4.9370 22 8 3.2712 -1.2221 5.5863 23 6 2.8198 -0.1934 4.8476 24 6 2.5806 1.1805 5.2942 25 6 2.7738 1.6588 6.5598 26 6 2.4233 3.0185 6.5353 27 6 2.0294 3.3050 5.2754 28 8 2.1255 2.1945 4.5301 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.7515 -1.7714 -1.2057 33 1 1.6053 -0.2616 -2.1370 34 1 3.8531 0.4371 -1.3573 35 1 3.9994 -1.0727 -0.4260 36 1 3.7864 -2.3851 -2.5187 37 1 3.6402 -0.8757 -3.4506 38 1 6.0172 -0.7556 -1.9303 39 1 9.2231 -0.9923 -2.8208 40 1 2.2489 -1.6319 1.1525 41 1 2.9970 -2.8343 2.9275 42 1 3.1292 1.1000 7.4129 43 1 2.4588 3.7053 7.3680 44 1 1.6917 4.2696 4.9260 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277227313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:55 Heat of formation + Delta-G solvation = 26.941360 kcal Electronic energy + Delta-G solvation = -27819.784953 eV Core-core repulsion = 23741.810962 eV Total energy + Delta-G solvation = -4077.973991 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.12484 -43.51109 -40.80991 -37.96177 -36.50587 -35.30830 -34.38853 -34.13485 -33.55613 -32.49499 -30.87252 -29.80076 -27.24579 -26.20748 -24.81286 -24.48259 -22.86706 -22.42806 -22.25672 -21.58527 -21.41996 -19.84516 -19.12787 -18.98182 -18.58807 -17.35233 -17.08923 -16.96058 -16.65908 -16.07996 -15.97460 -15.89846 -15.35894 -15.31548 -15.21393 -14.70683 -14.42867 -13.85201 -13.83788 -13.72094 -13.46285 -13.42265 -13.17960 -13.02559 -12.79156 -12.73381 -12.38888 -12.27900 -12.08965 -11.85394 -11.79241 -11.71467 -11.55900 -11.48829 -11.12911 -10.92466 -10.85823 -10.11370 -9.23605 -9.01048 -7.96147 -5.25588 -0.77205 0.65911 0.91500 1.00742 1.46245 1.49836 1.56041 1.63814 2.00586 2.17440 2.55467 2.70490 3.05632 3.14497 3.37424 3.42753 3.64393 3.87568 3.96939 3.97814 4.09955 4.12596 4.15101 4.29991 4.42544 4.60071 4.64816 4.69197 4.74431 4.84289 4.87740 4.89696 4.93420 4.96670 5.01953 5.13941 5.33521 5.37160 5.43761 5.45523 5.50559 5.56619 6.04158 6.26181 6.46489 6.87600 7.15135 7.31599 8.09463 8.30953 9.27483 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012879 B = 0.002418 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.558759 B =11578.232215 C =12223.340884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.147 3.853 3 H 0.068 0.932 4 C -0.109 4.109 5 C -0.114 4.114 6 C 0.150 3.850 7 N -0.751 5.751 8 C -0.247 4.247 9 H 0.078 0.922 10 C -0.080 4.080 11 N -0.972 5.972 12 Si 0.976 3.024 13 H -0.277 1.277 14 H -0.296 1.296 15 H -0.275 1.275 16 N -0.703 5.703 17 C 0.588 3.412 18 O -0.548 6.548 19 C -0.261 4.261 20 C 0.050 3.950 21 N -0.372 5.372 22 O 0.118 5.882 23 C 0.111 3.889 24 C -0.021 4.021 25 C -0.136 4.136 26 C -0.226 4.226 27 C -0.005 4.005 28 O -0.143 6.143 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.027 0.973 37 H 0.020 0.980 38 H 0.371 0.629 39 H 0.251 0.749 40 H 0.411 0.589 41 H 0.236 0.764 42 H 0.179 0.821 43 H 0.188 0.812 44 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.602 4.428 18.898 27.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.043 3.957 3 H 0.086 0.914 4 C -0.147 4.147 5 C -0.152 4.152 6 C 0.024 3.976 7 N -0.394 5.394 8 C -0.379 4.379 9 H 0.096 0.904 10 C -0.271 4.271 11 N -0.623 5.623 12 Si 0.804 3.196 13 H -0.203 1.203 14 H -0.222 1.222 15 H -0.201 1.201 16 N -0.355 5.355 17 C 0.375 3.625 18 O -0.427 6.427 19 C -0.269 4.269 20 C -0.130 4.130 21 N -0.078 5.078 22 O 0.057 5.943 23 C 0.046 3.954 24 C -0.072 4.072 25 C -0.156 4.156 26 C -0.244 4.244 27 C -0.075 4.075 28 O -0.037 6.037 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.038 0.962 38 H 0.202 0.798 39 H 0.060 0.940 40 H 0.248 0.752 41 H 0.252 0.748 42 H 0.197 0.803 43 H 0.205 0.795 44 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -19.432 4.067 19.130 27.570 hybrid contribution 1.053 -0.044 -0.903 1.388 sum -18.380 4.023 18.227 26.196 Atomic orbital electron populations 1.22096 0.93624 1.03079 1.02403 1.21005 0.94817 0.96613 0.83218 0.91412 1.21759 0.93418 1.02394 0.97121 1.21603 0.96599 0.99686 0.97275 1.20868 0.83063 0.97467 0.96241 1.42665 1.02638 1.65877 1.28199 1.19648 0.90017 1.26380 1.01849 0.90435 1.25636 0.97578 1.02462 1.01471 1.69823 1.07096 1.48828 1.36583 0.85175 0.77013 0.78427 0.78942 1.20263 1.22228 1.20123 1.45800 1.66600 1.14566 1.08551 1.16813 0.77550 0.85817 0.82354 1.90857 1.50959 1.15785 1.85060 1.21611 1.14472 0.95600 0.95172 1.25495 0.96862 0.95888 0.94715 1.73503 1.21109 1.05019 1.08188 1.84930 1.62118 1.12146 1.35104 1.21333 0.96148 0.88601 0.89359 1.18276 1.12240 0.85794 0.90857 1.22461 1.00915 0.96383 0.95822 1.22194 1.06898 0.96205 0.99115 1.25401 1.00670 0.90570 0.90906 1.84478 1.63941 1.17022 1.38222 0.90876 0.93791 0.90116 0.89143 0.88864 0.93637 0.92466 0.95524 0.96205 0.79777 0.94024 0.75186 0.74779 0.80327 0.79497 0.74214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.48 71.98 0.68 -1.95 16 2 C 0.15 3.07 2.57 44.99 0.12 3.19 16 3 H 0.07 1.77 7.58 -2.39 -0.02 1.75 16 4 C -0.11 -2.21 4.75 30.60 0.15 -2.07 16 5 C -0.11 -3.43 5.22 30.60 0.16 -3.27 16 6 C 0.15 5.78 6.26 86.38 0.54 6.32 16 7 N -0.75 -38.96 5.60 -343.46 -1.92 -40.88 16 8 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 9 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 10 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 11 N -0.97 -60.86 13.06 21.65 0.28 -60.57 16 12 Si 0.98 46.50 29.55 68.60 2.03 48.53 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 16 N -0.70 -14.66 4.53 -446.35 -2.02 -16.68 16 17 C 0.59 15.57 7.75 86.49 0.67 16.24 16 18 O -0.55 -17.81 13.57 18.15 0.25 -17.57 16 19 C -0.26 -6.35 6.37 -19.48 -0.12 -6.47 16 20 C 0.05 0.98 11.67 86.02 1.00 1.98 16 21 N -0.37 -8.60 11.97 -56.71 -0.68 -9.28 16 22 O 0.12 2.71 11.19 67.90 0.76 3.47 16 23 C 0.11 2.75 7.41 24.92 0.18 2.93 16 24 C -0.02 -0.50 7.08 24.04 0.17 -0.33 16 25 C -0.14 -2.35 10.86 22.44 0.24 -2.10 16 26 C -0.23 -3.06 10.88 22.08 0.24 -2.82 16 27 C -0.01 -0.09 12.08 67.09 0.81 0.72 16 28 O -0.14 -3.64 7.67 16.26 0.12 -3.52 16 29 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 33 H 0.09 1.73 8.14 -2.39 -0.02 1.72 16 34 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.06 1.76 7.75 -2.39 -0.02 1.75 16 36 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.37 20.70 7.67 -92.70 -0.71 19.98 16 39 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 40 H 0.41 6.48 7.82 -92.71 -0.73 5.76 16 41 H 0.24 2.74 7.74 -2.91 -0.02 2.72 16 42 H 0.18 2.18 8.06 -2.91 -0.02 2.15 16 43 H 0.19 1.25 8.06 -2.91 -0.02 1.23 16 44 H 0.24 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -78.05 380.35 4.57 -73.48 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: -0.39 Total: 28.00 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: 6.15 Total: -4.98 kcal Atomic # 7 Polarization: -123.08 SS G_CDS: -4.34 Total: -127.42 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: 1.13 Total: -17.61 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -78.05 4.57 -73.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277227313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.416 kcal (2) G-P(sol) polarization free energy of solvation -78.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds