Wall clock time and date at job start Tue Mar 31 2020 17:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 C 1.53001 * 109.47049 * 185.00237 * 4 2 1 6 6 C 1.53002 * 109.46964 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.46727 * 180.02562 * 6 5 4 8 8 C 1.36940 * 119.99562 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99899 * 0.02562 * 8 7 6 10 10 C 1.38812 * 119.99756 * 179.97438 * 8 7 6 11 11 N 1.31620 * 119.99952 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 119.99993 * 0.02562 * 10 8 7 13 13 H 1.48492 * 109.47280 * 89.99597 * 12 10 8 14 14 H 1.48499 * 109.46811 * 209.99599 * 12 10 8 15 15 H 1.48501 * 109.47190 * 329.99205 * 12 10 8 16 16 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 17 17 C 1.34770 * 120.00256 * 84.99846 * 16 2 1 18 18 O 1.21684 * 120.00380 * 359.97438 * 17 16 2 19 19 C 1.46837 * 119.99967 * 180.02562 * 17 16 2 20 20 C 1.42389 * 128.41433 * 359.67731 * 19 17 16 21 21 N 1.29900 * 106.48764 * 179.83777 * 20 19 17 22 22 O 1.20731 * 112.91161 * 0.45862 * 21 20 19 23 23 C 1.34457 * 111.91042 * 359.70068 * 22 21 20 24 24 C 1.46426 * 127.24488 * 180.02562 * 23 22 21 25 25 C 1.36675 * 125.99030 * 359.69700 * 24 23 22 26 26 C 1.40442 * 106.70014 * 179.88288 * 25 24 23 27 27 C 1.35083 * 107.12157 * 0.37448 * 26 25 24 28 28 O 1.34088 * 108.77960 * 359.76385 * 27 26 25 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 32 32 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 33 33 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 34 34 H 1.08998 * 109.47250 * 300.00119 * 5 4 2 35 35 H 1.08998 * 109.47252 * 60.00195 * 5 4 2 36 36 H 1.09002 * 109.46615 * 299.99612 * 6 5 4 37 37 H 1.08998 * 109.47254 * 59.99857 * 6 5 4 38 38 H 0.96997 * 120.00417 * 0.02562 * 7 6 5 39 39 H 0.96997 * 119.99979 * 180.02562 * 11 10 8 40 40 H 0.97005 * 119.99374 * 264.99912 * 16 2 1 41 41 H 1.07999 * 126.75720 * 359.97438 * 20 19 17 42 42 H 1.08000 * 126.65202 * 359.97438 * 25 24 23 43 43 H 1.07998 * 126.44241 * 180.14657 * 26 25 24 44 44 H 1.07998 * 125.61204 * 179.74965 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 6 4.0749 -1.3351 2.5626 7 7 5.5350 -1.2311 2.6246 8 6 6.2187 -1.8053 3.6629 9 1 5.6817 -2.3351 4.4357 10 6 7.6021 -1.7072 3.7214 11 7 8.2593 -2.2586 4.7196 12 14 8.5309 -0.7915 2.3842 13 1 8.6618 0.6384 2.7628 14 1 9.8819 -1.3867 2.2235 15 1 7.7875 -0.8983 1.1031 16 7 2.0184 -0.6905 -1.1962 17 6 2.1471 -0.0181 -2.3571 18 8 1.8573 1.1625 -2.4119 19 6 2.6361 -0.7103 -3.5562 20 6 3.0281 -2.0723 -3.6935 21 7 3.3837 -2.2305 -4.9328 22 8 3.2916 -1.2163 -5.5813 23 6 2.8362 -0.1886 -4.8435 24 6 2.5985 1.1857 -5.2895 25 6 2.8077 1.6682 -6.5510 26 6 2.4475 3.0255 -6.5288 27 6 2.0478 3.3104 -5.2703 28 8 2.1402 2.1988 -4.5260 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2055 34 1 3.9995 -1.0727 0.4259 35 1 3.8532 0.4370 1.3574 36 1 3.6403 -0.8759 3.4505 37 1 3.7866 -2.3853 2.5184 38 1 6.0172 -0.7549 1.9306 39 1 9.2260 -2.1898 4.7606 40 1 2.2491 -1.6317 -1.1527 41 1 3.0275 -2.8261 -2.9201 42 1 3.1768 1.1131 -7.4007 43 1 2.4865 3.7133 -7.3605 44 1 1.7098 4.2747 -4.9209 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277227314.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:59 Heat of formation + Delta-G solvation = 53.612898 kcal Electronic energy + Delta-G solvation = -27931.468422 eV Core-core repulsion = 23854.650996 eV Total energy + Delta-G solvation = -4076.817426 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.37204 -42.85272 -39.92573 -36.91824 -35.04908 -34.51539 -33.68415 -32.88365 -32.57896 -31.28794 -29.85119 -29.12265 -26.02750 -25.30672 -23.87509 -22.77198 -22.01787 -21.64569 -21.00658 -20.73553 -20.63380 -19.12161 -18.21152 -17.81826 -17.51603 -16.48365 -16.41532 -16.25155 -15.32459 -15.06627 -14.89739 -14.63909 -14.41114 -14.04393 -13.84975 -13.65892 -13.26103 -13.16632 -13.01680 -12.81842 -12.66053 -12.32185 -12.24822 -12.00592 -11.73606 -11.33813 -11.03545 -10.99415 -10.93144 -10.77706 -10.55975 -10.43212 -10.24156 -10.20056 -10.11760 -9.59586 -9.26323 -8.89497 -8.55507 -7.23248 -5.77271 -3.12619 -0.01343 1.41026 1.62045 1.68009 2.25371 2.79507 3.02742 3.36602 3.37435 3.40837 3.45245 3.74240 3.85644 4.18879 4.49766 4.52416 4.56446 4.59149 4.77098 4.81048 4.93666 5.03795 5.30147 5.32180 5.36344 5.39138 5.40327 5.51039 5.52988 5.54618 5.65446 5.82343 5.90254 5.97141 5.97477 6.06006 6.09419 6.26416 6.34290 6.66356 6.73113 6.76571 7.25560 7.63766 7.98519 7.99255 8.42116 9.21353 9.94013 10.13865 11.41232 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011698 B = 0.002725 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.931192 B =10273.178186 C =11039.011672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.130 4.130 6 C 0.157 3.843 7 N -0.758 5.758 8 C -0.244 4.244 9 H 0.090 0.910 10 C 0.003 3.997 11 N -0.935 5.935 12 Si 0.885 3.115 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.278 1.278 16 N -0.713 5.713 17 C 0.591 3.409 18 O -0.514 6.514 19 C -0.238 4.238 20 C 0.035 3.965 21 N -0.352 5.352 22 O 0.123 5.877 23 C 0.112 3.888 24 C 0.021 3.979 25 C -0.147 4.147 26 C -0.227 4.227 27 C -0.002 4.002 28 O -0.111 6.111 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.026 0.974 37 H 0.025 0.975 38 H 0.360 0.640 39 H 0.259 0.741 40 H 0.400 0.600 41 H 0.205 0.795 42 H 0.160 0.840 43 H 0.157 0.843 44 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.522 7.742 -23.472 30.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.109 0.891 4 C -0.161 4.161 5 C -0.168 4.168 6 C 0.030 3.970 7 N -0.404 5.404 8 C -0.374 4.374 9 H 0.108 0.892 10 C -0.192 4.192 11 N -0.583 5.583 12 Si 0.715 3.285 13 H -0.210 1.210 14 H -0.217 1.217 15 H -0.204 1.204 16 N -0.365 5.365 17 C 0.376 3.624 18 O -0.390 6.390 19 C -0.246 4.246 20 C -0.144 4.144 21 N -0.056 5.056 22 O 0.059 5.941 23 C 0.046 3.954 24 C -0.031 4.031 25 C -0.167 4.167 26 C -0.246 4.246 27 C -0.073 4.073 28 O -0.003 6.003 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.044 0.956 37 H 0.043 0.957 38 H 0.193 0.807 39 H 0.069 0.931 40 H 0.235 0.765 41 H 0.222 0.778 42 H 0.177 0.823 43 H 0.174 0.826 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -18.312 7.364 -23.643 30.799 hybrid contribution 0.789 0.548 -0.414 1.046 sum -17.524 7.912 -24.057 30.797 Atomic orbital electron populations 1.22173 0.95182 1.02144 1.02551 1.21085 0.93780 0.97793 0.83357 0.89081 1.21850 0.96550 1.01041 0.96695 1.21794 0.94134 1.01423 0.99484 1.20627 0.84875 0.97064 0.94450 1.42739 1.01753 1.67128 1.28743 1.19073 0.89925 1.27565 1.00873 0.89238 1.24682 0.96197 1.00554 0.97814 1.69703 1.07328 1.49363 1.31882 0.86537 0.79645 0.80010 0.82272 1.21039 1.21681 1.20434 1.45870 1.67268 1.14042 1.09295 1.16641 0.77949 0.86103 0.81668 1.90885 1.49367 1.14405 1.84390 1.21591 1.12802 0.94771 0.95395 1.25050 0.98698 0.96094 0.94595 1.73543 1.19948 1.04670 1.07402 1.84954 1.61683 1.12204 1.35276 1.21041 0.96921 0.88213 0.89182 1.17997 1.09477 0.85679 0.89905 1.22054 1.02698 0.95579 0.96362 1.21800 1.07716 0.96531 0.98555 1.24584 1.01749 0.90395 0.90577 1.84500 1.63151 1.15901 1.36793 0.92442 0.91360 0.92253 0.89889 0.91159 0.92169 0.91929 0.95594 0.95731 0.80730 0.93058 0.76543 0.77832 0.82282 0.82573 0.77229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.48 37.16 0.35 -1.08 16 2 C 0.14 1.46 2.57 -67.93 -0.17 1.29 16 3 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 4 C -0.12 -1.28 4.75 -26.73 -0.13 -1.41 16 5 C -0.13 -1.86 5.22 -26.73 -0.14 -2.00 16 6 C 0.16 2.95 6.26 -4.04 -0.03 2.92 16 7 N -0.76 -18.29 5.41 -59.90 -0.32 -18.61 16 8 C -0.24 -7.04 10.47 -15.06 -0.16 -7.19 16 9 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 10 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 11 N -0.93 -29.70 13.97 55.49 0.78 -28.93 16 12 Si 0.89 22.54 27.73 -169.99 -4.71 17.83 16 13 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 15 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 16 N -0.71 -7.13 4.53 -55.06 -0.25 -7.38 16 17 C 0.59 7.24 7.76 -12.79 -0.10 7.14 16 18 O -0.51 -7.66 13.57 -18.27 -0.25 -7.91 16 19 C -0.24 -2.68 6.37 -104.03 -0.66 -3.35 16 20 C 0.03 0.33 11.67 -16.77 -0.20 0.14 16 21 N -0.35 -3.89 11.97 30.86 0.37 -3.52 16 22 O 0.12 1.32 11.19 16.11 0.18 1.50 16 23 C 0.11 1.27 7.41 -35.50 -0.26 1.01 16 24 C 0.02 0.23 7.08 -36.85 -0.26 -0.03 16 25 C -0.15 -1.25 10.86 -39.32 -0.43 -1.68 16 26 C -0.23 -1.62 10.88 -39.87 -0.43 -2.06 16 27 C 0.00 -0.02 12.08 29.61 0.36 0.34 16 28 O -0.11 -1.31 7.67 -18.80 -0.14 -1.46 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.86 7.75 -51.93 -0.40 0.45 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.36 8.54 5.53 -40.82 -0.23 8.31 16 39 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 40 H 0.40 3.15 7.82 -40.82 -0.32 2.83 16 41 H 0.20 1.24 7.74 -52.49 -0.41 0.84 16 42 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.21 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 377.23 15.07 5.68 5.68 Total: -1.00 -36.07 377.23 -7.01 -43.09 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -5.99 Total: 5.66 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -2.35 Total: -5.96 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: 0.57 Total: -58.44 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -0.21 Total: -7.86 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.71 Total: 17.83 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.07 -7.01 -43.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277227314.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.700 kcal (2) G-P(sol) polarization free energy of solvation -36.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds