Wall clock time and date at job start Tue Mar 31 2020 17:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 5 5 C 1.53001 * 109.47049 * 185.00237 * 4 2 1 6 6 C 1.53002 * 109.46964 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.46727 * 180.02562 * 6 5 4 8 8 C 1.36940 * 119.99562 * 179.97438 * 7 6 5 9 9 H 1.08002 * 119.99899 * 0.02562 * 8 7 6 10 10 C 1.38812 * 119.99756 * 179.97438 * 8 7 6 11 11 N 1.31620 * 119.99952 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 119.99993 * 0.02562 * 10 8 7 13 13 H 1.48492 * 109.47280 * 89.99597 * 12 10 8 14 14 H 1.48499 * 109.46811 * 209.99599 * 12 10 8 15 15 H 1.48501 * 109.47190 * 329.99205 * 12 10 8 16 16 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 17 17 C 1.34770 * 120.00256 * 84.99846 * 16 2 1 18 18 O 1.21684 * 120.00380 * 359.97438 * 17 16 2 19 19 C 1.46837 * 119.99967 * 180.02562 * 17 16 2 20 20 C 1.42389 * 128.41433 * 359.67731 * 19 17 16 21 21 N 1.29900 * 106.48764 * 179.83777 * 20 19 17 22 22 O 1.20731 * 112.91161 * 0.45862 * 21 20 19 23 23 C 1.34457 * 111.91042 * 359.70068 * 22 21 20 24 24 C 1.46426 * 127.24488 * 180.02562 * 23 22 21 25 25 C 1.36675 * 125.99030 * 359.69700 * 24 23 22 26 26 C 1.40442 * 106.70014 * 179.88288 * 25 24 23 27 27 C 1.35083 * 107.12157 * 0.37448 * 26 25 24 28 28 O 1.34088 * 108.77960 * 359.76385 * 27 26 25 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 32 32 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 33 33 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 34 34 H 1.08998 * 109.47250 * 300.00119 * 5 4 2 35 35 H 1.08998 * 109.47252 * 60.00195 * 5 4 2 36 36 H 1.09002 * 109.46615 * 299.99612 * 6 5 4 37 37 H 1.08998 * 109.47254 * 59.99857 * 6 5 4 38 38 H 0.96997 * 120.00417 * 0.02562 * 7 6 5 39 39 H 0.96997 * 119.99979 * 180.02562 * 11 10 8 40 40 H 0.97005 * 119.99374 * 264.99912 * 16 2 1 41 41 H 1.07999 * 126.75720 * 359.97438 * 20 19 17 42 42 H 1.08000 * 126.65202 * 359.97438 * 25 24 23 43 43 H 1.07998 * 126.44241 * 180.14657 * 26 25 24 44 44 H 1.07998 * 125.61204 * 179.74965 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 6 4.0749 -1.3351 2.5626 7 7 5.5350 -1.2311 2.6246 8 6 6.2187 -1.8053 3.6629 9 1 5.6817 -2.3351 4.4357 10 6 7.6021 -1.7072 3.7214 11 7 8.2593 -2.2586 4.7196 12 14 8.5309 -0.7915 2.3842 13 1 8.6618 0.6384 2.7628 14 1 9.8819 -1.3867 2.2235 15 1 7.7875 -0.8983 1.1031 16 7 2.0184 -0.6905 -1.1962 17 6 2.1471 -0.0181 -2.3571 18 8 1.8573 1.1625 -2.4119 19 6 2.6361 -0.7103 -3.5562 20 6 3.0281 -2.0723 -3.6935 21 7 3.3837 -2.2305 -4.9328 22 8 3.2916 -1.2163 -5.5813 23 6 2.8362 -0.1886 -4.8435 24 6 2.5985 1.1857 -5.2895 25 6 2.8077 1.6682 -6.5510 26 6 2.4475 3.0255 -6.5288 27 6 2.0478 3.3104 -5.2703 28 8 2.1402 2.1988 -4.5260 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2055 34 1 3.9995 -1.0727 0.4259 35 1 3.8532 0.4370 1.3574 36 1 3.6403 -0.8759 3.4505 37 1 3.7866 -2.3853 2.5184 38 1 6.0172 -0.7549 1.9306 39 1 9.2260 -2.1898 4.7606 40 1 2.2491 -1.6317 -1.1527 41 1 3.0275 -2.8261 -2.9201 42 1 3.1768 1.1131 -7.4007 43 1 2.4865 3.7133 -7.3605 44 1 1.7098 4.2747 -4.9209 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277227314.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:58 Heat of formation + Delta-G solvation = 29.880920 kcal Electronic energy + Delta-G solvation = -27932.497518 eV Core-core repulsion = 23854.650996 eV Total energy + Delta-G solvation = -4077.846522 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.13165 -43.51910 -40.81548 -38.02478 -36.62462 -35.31497 -34.39633 -34.19157 -33.56499 -32.74991 -31.13962 -29.81203 -27.38433 -26.20351 -24.65385 -24.31642 -22.85976 -22.49199 -22.33375 -21.58187 -21.42588 -19.85061 -19.62920 -18.98882 -18.59907 -17.35387 -17.09636 -16.96952 -16.62595 -16.13556 -15.99339 -15.89675 -15.71650 -15.29917 -14.94722 -14.73132 -14.55369 -13.89676 -13.85091 -13.73149 -13.57617 -13.50356 -13.45223 -13.08864 -12.86332 -12.78764 -12.50027 -12.10522 -12.04305 -11.88324 -11.80167 -11.75588 -11.57325 -11.52598 -11.13273 -10.98509 -10.86841 -10.12035 -9.30848 -9.24476 -8.05267 -5.38298 -0.78061 0.65359 0.90702 0.99729 1.35227 1.38092 1.45372 1.62775 2.00142 2.16570 2.45573 2.69558 3.05232 3.13663 3.26391 3.41739 3.50532 3.84675 3.88799 3.96162 4.08614 4.11428 4.14351 4.18165 4.41269 4.56923 4.64226 4.65547 4.73413 4.83431 4.86367 4.88748 4.91283 4.95823 5.01633 5.13591 5.32888 5.35124 5.43370 5.44300 5.56007 5.74186 6.02975 6.19684 6.46298 6.87051 7.06175 7.14822 7.83829 8.01203 9.16360 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011698 B = 0.002725 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.931192 B =10273.178186 C =11039.011672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.148 3.852 3 H 0.071 0.929 4 C -0.111 4.111 5 C -0.118 4.118 6 C 0.151 3.849 7 N -0.763 5.763 8 C -0.235 4.235 9 H 0.058 0.942 10 C -0.065 4.065 11 N -0.983 5.983 12 Si 0.955 3.045 13 H -0.279 1.279 14 H -0.294 1.294 15 H -0.255 1.255 16 N -0.703 5.703 17 C 0.589 3.411 18 O -0.547 6.547 19 C -0.261 4.261 20 C 0.049 3.951 21 N -0.373 5.373 22 O 0.117 5.883 23 C 0.112 3.888 24 C -0.021 4.021 25 C -0.137 4.137 26 C -0.226 4.226 27 C -0.005 4.005 28 O -0.142 6.142 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.043 0.957 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.024 0.976 37 H 0.030 0.970 38 H 0.364 0.636 39 H 0.258 0.742 40 H 0.412 0.588 41 H 0.236 0.764 42 H 0.179 0.821 43 H 0.187 0.813 44 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.537 8.532 -25.422 33.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.044 3.956 3 H 0.089 0.911 4 C -0.149 4.149 5 C -0.156 4.156 6 C 0.026 3.974 7 N -0.409 5.409 8 C -0.366 4.366 9 H 0.076 0.924 10 C -0.256 4.256 11 N -0.634 5.634 12 Si 0.782 3.218 13 H -0.205 1.205 14 H -0.220 1.220 15 H -0.179 1.179 16 N -0.356 5.356 17 C 0.375 3.625 18 O -0.426 6.426 19 C -0.268 4.268 20 C -0.130 4.130 21 N -0.079 5.079 22 O 0.056 5.944 23 C 0.046 3.954 24 C -0.071 4.071 25 C -0.156 4.156 26 C -0.245 4.245 27 C -0.075 4.075 28 O -0.036 6.036 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.042 0.958 37 H 0.048 0.952 38 H 0.197 0.803 39 H 0.067 0.933 40 H 0.249 0.751 41 H 0.253 0.747 42 H 0.196 0.804 43 H 0.204 0.796 44 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -19.376 8.147 -25.630 33.147 hybrid contribution 1.005 0.350 0.216 1.086 sum -18.371 8.497 -25.414 32.490 Atomic orbital electron populations 1.22101 0.93845 1.03002 1.02368 1.21005 0.94707 0.96733 0.83151 0.91067 1.21763 0.93554 1.02440 0.97163 1.21672 0.96712 1.00152 0.97106 1.20862 0.81945 0.97949 0.96668 1.42819 1.03902 1.66658 1.27526 1.19083 0.90184 1.26326 1.01039 0.92368 1.25514 0.97327 1.02256 1.00537 1.69880 1.07523 1.51631 1.34375 0.85414 0.77904 0.78403 0.80086 1.20532 1.22046 1.17922 1.45810 1.66569 1.14534 1.08639 1.16800 0.77590 0.85808 0.82310 1.90863 1.50951 1.15805 1.84943 1.21611 1.14316 0.95659 0.95219 1.25508 0.96879 0.95919 0.94661 1.73521 1.21270 1.04951 1.08127 1.84936 1.62033 1.12138 1.35271 1.21328 0.96025 0.88608 0.89461 1.18270 1.12059 0.85825 0.90975 1.22461 1.00897 0.96356 0.95934 1.22197 1.06816 0.96309 0.99164 1.25396 1.00654 0.90563 0.90873 1.84476 1.63942 1.16951 1.38210 0.91023 0.90184 0.93815 0.88871 0.89240 0.91848 0.92723 0.95771 0.95220 0.80336 0.93295 0.75143 0.74734 0.80392 0.79580 0.74213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.48 71.98 0.68 -1.74 16 2 C 0.15 2.73 2.57 44.99 0.12 2.85 16 3 H 0.07 1.64 7.58 -2.39 -0.02 1.63 16 4 C -0.11 -2.00 4.75 30.59 0.15 -1.85 16 5 C -0.12 -3.11 5.22 30.60 0.16 -2.95 16 6 C 0.15 5.43 6.26 86.38 0.54 5.97 16 7 N -0.76 -35.89 5.41 -343.44 -1.86 -37.75 16 8 C -0.24 -13.60 10.47 84.03 0.88 -12.72 16 9 H 0.06 3.66 8.06 -2.91 -0.02 3.63 16 10 C -0.06 -3.88 5.50 84.86 0.47 -3.41 16 11 N -0.98 -63.68 13.97 21.65 0.30 -63.38 16 12 Si 0.95 46.31 27.73 68.60 1.90 48.21 16 13 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 14 H -0.29 -14.34 7.11 99.48 0.71 -13.64 16 15 H -0.25 -11.22 6.52 99.48 0.65 -10.57 16 16 N -0.70 -12.89 4.53 -446.34 -2.02 -14.91 16 17 C 0.59 14.13 7.76 86.49 0.67 14.80 16 18 O -0.55 -16.46 13.57 18.14 0.25 -16.22 16 19 C -0.26 -5.76 6.37 -19.48 -0.12 -5.88 16 20 C 0.05 0.88 11.67 86.01 1.00 1.88 16 21 N -0.37 -7.95 11.97 -56.72 -0.68 -8.63 16 22 O 0.12 2.49 11.19 67.86 0.76 3.25 16 23 C 0.11 2.54 7.41 24.91 0.18 2.72 16 24 C -0.02 -0.45 7.08 24.04 0.17 -0.28 16 25 C -0.14 -2.17 10.86 22.44 0.24 -1.92 16 26 C -0.23 -2.78 10.88 22.08 0.24 -2.54 16 27 C 0.00 -0.07 12.08 67.09 0.81 0.74 16 28 O -0.14 -3.36 7.67 16.24 0.12 -3.24 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.63 7.75 -2.39 -0.02 1.62 16 35 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.36 16.48 5.53 -92.71 -0.51 15.97 16 39 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 40 H 0.41 5.44 7.82 -92.70 -0.73 4.72 16 41 H 0.24 2.25 7.74 -2.91 -0.02 2.23 16 42 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 43 H 0.19 1.04 8.06 -2.91 -0.02 1.02 16 44 H 0.24 1.53 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -80.04 377.23 4.72 -75.33 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -0.25 Total: 21.65 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: 6.19 Total: -4.33 kcal Atomic # 7 Polarization: -120.41 SS G_CDS: -4.25 Total: -124.66 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: 1.13 Total: -16.20 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.90 Total: 48.21 kcal Total: -80.04 4.72 -75.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277227314.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.210 kcal (2) G-P(sol) polarization free energy of solvation -80.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds