Wall clock time and date at job start Tue Mar 31 2020 18:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09011 * 109.47165 * 2 1 4 4 C 1.50703 * 109.47243 * 239.99873 * 2 1 3 5 5 H 1.07994 * 119.99946 * 245.25540 * 4 2 1 6 6 C 1.37875 * 119.99618 * 65.26142 * 4 2 1 7 7 N 1.31520 * 119.99697 * 184.84101 * 6 4 2 8 8 Si 1.86806 * 120.00377 * 5.11303 * 6 4 2 9 9 H 1.48492 * 109.47172 * 269.72612 * 8 6 4 10 10 H 1.48498 * 109.46767 * 29.72714 * 8 6 4 11 11 H 1.48504 * 109.46937 * 149.72700 * 8 6 4 12 12 N 1.46494 * 109.47274 * 119.99868 * 2 1 3 13 13 C 1.34778 * 120.00375 * 275.00148 * 12 2 1 14 14 O 1.21365 * 119.99799 * 359.97438 * 13 12 2 15 15 C 1.49351 * 120.00534 * 179.97438 * 13 12 2 16 16 O 1.21381 * 119.99511 * 359.97438 * 15 13 12 17 17 N 1.34776 * 120.00115 * 180.02562 * 15 13 12 18 18 C 1.39722 * 119.99858 * 185.38087 * 17 15 13 19 19 C 1.38939 * 120.07761 * 214.48754 * 18 17 15 20 20 C 1.38095 * 119.92405 * 179.72821 * 19 18 17 21 21 C 1.38301 * 120.07453 * 0.57067 * 20 19 18 22 22 C 1.50698 * 119.91968 * 179.72649 * 21 20 19 23 23 C 1.53006 * 109.46980 * 269.97298 * 22 21 20 24 24 C 1.50695 * 109.46881 * 180.02562 * 23 22 21 25 25 N 1.34780 * 119.99745 * 180.02562 * 24 23 22 26 26 O 1.21284 * 120.00448 * 0.02562 * 24 23 22 27 27 C 1.38289 * 120.14964 * 359.69969 * 21 20 19 28 28 C 1.38091 * 120.08297 * 0.02562 * 27 21 20 29 29 H 1.09004 * 109.46989 * 54.98138 * 1 2 3 30 30 H 1.08996 * 109.46872 * 174.98092 * 1 2 3 31 31 H 1.09002 * 109.47222 * 294.98650 * 1 2 3 32 32 H 0.96992 * 120.00002 * 355.26677 * 7 6 4 33 33 H 0.96999 * 119.99933 * 94.99806 * 12 2 1 34 34 H 0.96995 * 120.00291 * 5.38624 * 17 15 13 35 35 H 1.08002 * 120.03253 * 359.97438 * 19 18 17 36 36 H 1.07992 * 119.96533 * 180.29525 * 20 19 18 37 37 H 1.08991 * 109.47678 * 29.97724 * 22 21 20 38 38 H 1.09002 * 109.46698 * 149.97756 * 22 21 20 39 39 H 1.08999 * 109.46935 * 300.00521 * 23 22 21 40 40 H 1.08994 * 109.46482 * 60.00469 * 23 22 21 41 41 H 0.96999 * 119.99848 * 359.97438 * 25 24 23 42 42 H 0.96995 * 119.99811 * 179.97438 * 25 24 23 43 43 H 1.08011 * 119.95707 * 180.02562 * 27 21 20 44 44 H 1.08000 * 120.04226 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5815 -1.6353 -1.1336 6 6 1.7910 -0.1795 -2.4798 7 7 2.1452 -0.8458 -3.5570 8 14 0.9680 1.4896 -2.6424 9 1 -0.5044 1.3106 -2.7136 10 1 1.3085 2.3262 -1.4637 11 1 1.4457 2.1587 -3.8791 12 7 2.0183 -0.6905 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8589 1.1594 2.4115 15 6 2.6444 -0.7224 3.5767 16 8 2.9322 -1.9003 3.5224 17 7 2.7726 -0.0501 4.7378 18 6 3.3427 -0.6770 5.8487 19 6 2.8867 -0.3789 7.1268 20 6 3.4485 -1.0045 8.2222 21 6 4.4722 -1.9182 8.0489 22 6 5.0870 -2.5944 9.2472 23 6 6.2634 -1.7589 9.7564 24 6 6.8786 -2.4354 10.9542 25 7 7.9368 -1.8764 11.5741 26 8 6.4216 -3.4828 11.3604 27 6 4.9323 -2.2132 6.7786 28 6 4.3712 -1.5955 5.6784 29 1 -0.3633 0.5897 -0.8417 30 1 -0.3633 -1.0237 -0.0899 31 1 -0.3634 0.4341 0.9315 32 1 2.6370 -1.6775 -3.4730 33 1 2.2490 -1.6317 1.1526 34 1 2.4691 0.8689 4.8023 35 1 2.0909 0.3385 7.2631 36 1 3.0913 -0.7768 9.2155 37 1 4.3397 -2.6876 10.0350 38 1 5.4412 -3.5854 8.9631 39 1 7.0107 -1.6657 8.9684 40 1 5.9092 -0.7680 10.0403 41 1 8.3025 -1.0389 11.2490 42 1 8.3325 -2.3116 12.3454 43 1 5.7316 -2.9276 6.6469 44 1 4.7313 -1.8260 4.6867 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324359378.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:17 Heat of formation + Delta-G solvation = -94.869412 kcal Electronic energy + Delta-G solvation = -26890.529786 eV Core-core repulsion = 22807.273685 eV Total energy + Delta-G solvation = -4083.256102 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.95272 -40.02654 -39.30438 -38.12614 -35.79383 -35.08837 -34.13825 -33.23205 -32.49724 -31.17197 -30.01250 -29.29046 -25.81849 -24.95092 -23.95061 -23.20296 -21.64410 -20.78660 -20.49963 -19.79055 -18.89008 -17.80467 -17.73936 -17.26707 -17.17320 -16.31668 -16.07006 -15.77783 -15.42387 -15.12621 -14.89119 -14.39377 -14.17458 -13.89256 -13.75289 -13.64045 -13.27432 -13.23803 -13.15625 -12.83275 -12.39196 -12.28214 -11.89604 -11.82598 -11.67447 -11.56591 -11.34323 -11.14173 -10.63698 -10.52867 -10.33181 -10.17583 -10.16749 -9.85767 -9.34583 -9.11330 -8.97146 -8.65648 -8.44632 -8.24563 -6.62859 -4.31794 0.90339 1.20157 1.73772 2.19604 2.52476 3.05887 3.30140 3.39239 3.40168 3.52435 3.64291 3.92105 4.31741 4.34779 4.52867 4.60329 4.74206 4.76460 4.86043 4.93501 5.14069 5.14295 5.18673 5.20396 5.37585 5.59543 5.76693 5.80716 6.05160 6.10255 6.22550 6.26845 6.28508 6.29754 6.40488 6.46433 6.70768 6.77419 6.82583 6.91296 7.10275 7.14026 7.45040 7.73421 7.79534 8.12191 8.21411 8.42608 8.71306 9.39480 10.78318 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.033172 B = 0.001798 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.882000 B =15564.950384 C =15897.313379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.232 3.768 3 H 0.054 0.946 4 C -0.613 4.613 5 H 0.065 0.935 6 C 0.037 3.963 7 N -0.901 5.901 8 Si 1.051 2.949 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.661 5.661 13 C 0.496 3.504 14 O -0.536 6.536 15 C 0.508 3.492 16 O -0.501 6.501 17 N -0.652 5.652 18 C 0.147 3.853 19 C -0.140 4.140 20 C -0.096 4.096 21 C -0.104 4.104 22 C -0.062 4.062 23 C -0.137 4.137 24 C 0.515 3.485 25 N -0.859 5.859 26 O -0.544 6.544 27 C -0.094 4.094 28 C -0.117 4.117 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.270 0.730 33 H 0.407 0.593 34 H 0.423 0.577 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.402 0.598 42 H 0.400 0.600 43 H 0.126 0.874 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.318 2.238 28.369 29.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.130 3.870 3 H 0.072 0.928 4 C -0.651 4.651 5 H 0.083 0.917 6 C -0.169 4.169 7 N -0.534 5.534 8 Si 0.880 3.120 9 H -0.207 1.207 10 H -0.200 1.200 11 H -0.213 1.213 12 N -0.309 5.309 13 C 0.274 3.726 14 O -0.415 6.415 15 C 0.291 3.709 16 O -0.374 6.374 17 N -0.299 5.299 18 C 0.053 3.947 19 C -0.161 4.161 20 C -0.115 4.115 21 C -0.104 4.104 22 C -0.100 4.100 23 C -0.177 4.177 24 C 0.301 3.699 25 N -0.423 5.423 26 O -0.420 6.420 27 C -0.113 4.113 28 C -0.137 4.137 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.242 0.758 34 H 0.261 0.739 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.230 0.770 42 H 0.231 0.769 43 H 0.144 0.856 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.283 2.641 27.220 28.301 hybrid contribution 0.930 -0.893 1.217 1.773 sum 8.213 1.748 28.437 29.651 Atomic orbital electron populations 1.22415 0.98534 1.01351 0.99540 1.19449 0.90800 0.94899 0.81879 0.92830 1.22141 1.41100 1.11071 0.90782 0.91663 1.25725 0.96213 1.03531 0.91479 1.70820 1.35648 1.16819 1.30121 0.83919 0.76484 0.75428 0.76203 1.20693 1.19975 1.21266 1.46229 1.61256 1.14694 1.08770 1.19734 0.80984 0.87268 0.84598 1.90726 1.50772 1.15192 1.84827 1.20835 0.78378 0.86951 0.84742 1.90766 1.46964 1.15060 1.84618 1.43240 1.60076 1.17443 1.09181 1.17786 0.93851 0.96695 0.86342 1.20918 1.01266 1.02904 0.90975 1.20804 0.96192 0.96197 0.98259 1.19812 0.97712 0.98379 0.94525 1.20276 0.96281 0.98256 0.95144 1.21694 0.99325 1.00744 0.95969 1.20822 0.79633 0.84900 0.84572 1.43940 1.34616 1.28453 1.35279 1.90768 1.61837 1.23146 1.66259 1.20923 0.99697 0.99323 0.91339 1.21177 0.94871 0.97464 1.00188 0.92684 0.92714 0.94639 0.91980 0.75816 0.73936 0.85423 0.85616 0.90207 0.90153 0.88465 0.88514 0.76973 0.76930 0.85608 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 9.07 37.16 0.34 -3.12 16 2 C 0.23 5.45 2.14 -69.08 -0.15 5.30 16 3 H 0.05 1.34 6.09 -51.92 -0.32 1.02 16 4 C -0.61 -16.38 9.10 -34.44 -0.31 -16.69 16 5 H 0.07 1.84 7.95 -52.49 -0.42 1.42 16 6 C 0.04 1.02 5.43 -17.82 -0.10 0.92 16 7 N -0.90 -26.63 13.70 55.43 0.76 -25.87 16 8 Si 1.05 24.64 25.27 -169.99 -4.30 20.35 16 9 H -0.28 -6.21 6.82 56.52 0.39 -5.82 16 10 H -0.27 -6.13 6.35 56.52 0.36 -5.77 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 N -0.66 -13.55 5.06 -55.39 -0.28 -13.83 16 13 C 0.50 9.32 7.85 -11.63 -0.09 9.23 16 14 O -0.54 -10.89 16.15 5.48 0.09 -10.80 16 15 C 0.51 8.21 7.61 -11.63 -0.09 8.12 16 16 O -0.50 -8.86 14.27 5.47 0.08 -8.79 16 17 N -0.65 -8.44 5.32 -10.29 -0.05 -8.50 16 18 C 0.15 1.76 6.25 -83.74 -0.52 1.24 16 19 C -0.14 -1.33 9.97 -39.37 -0.39 -1.73 16 20 C -0.10 -0.80 9.69 -39.61 -0.38 -1.18 16 21 C -0.10 -0.89 5.14 -104.58 -0.54 -1.43 16 22 C -0.06 -0.45 4.63 -27.88 -0.13 -0.58 16 23 C -0.14 -0.71 5.68 -27.88 -0.16 -0.86 16 24 C 0.52 3.59 8.10 -10.99 -0.09 3.50 16 25 N -0.86 -2.89 8.87 31.22 0.28 -2.61 16 26 O -0.54 -6.32 16.82 5.55 0.09 -6.23 16 27 C -0.09 -0.93 9.69 -39.62 -0.38 -1.31 16 28 C -0.12 -1.43 8.65 -39.38 -0.34 -1.77 16 29 H 0.05 1.19 4.39 -51.93 -0.23 0.96 16 30 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.27 7.93 8.72 -40.82 -0.36 7.57 16 33 H 0.41 7.99 8.00 -40.82 -0.33 7.66 16 34 H 0.42 4.73 8.30 -40.82 -0.34 4.39 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.08 0.62 8.04 -51.93 -0.42 0.20 16 38 H 0.08 0.66 8.04 -51.93 -0.42 0.24 16 39 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.40 0.18 8.83 -40.82 -0.36 -0.18 16 42 H 0.40 1.14 8.93 -40.82 -0.36 0.78 16 43 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 44 H 0.13 1.84 6.53 -52.49 -0.34 1.50 16 LS Contribution 375.28 15.07 5.66 5.66 Total: -1.00 -34.21 375.28 -6.72 -40.93 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -5.70 Total: 10.06 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -3.34 Total: -0.36 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.70 Total: -50.81 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: 0.26 Total: -25.81 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -4.30 Total: 20.35 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.21 -6.72 -40.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324359378.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.942 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds