Wall clock time and date at job start Tue Mar 31 2020 18:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34780 * 119.99736 * 2 1 4 4 O 1.21279 * 120.00218 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00130 * 179.97438 * 3 2 1 6 6 C 1.50695 * 109.47176 * 180.02562 * 5 3 2 7 7 C 1.38114 * 120.04132 * 265.25859 * 6 5 3 8 8 C 1.38278 * 120.07848 * 180.25384 * 7 6 5 9 9 C 1.38315 * 120.14888 * 359.74679 * 8 7 6 10 10 C 1.38074 * 120.07819 * 0.02562 * 9 8 7 11 11 C 1.38917 * 120.03802 * 85.00802 * 6 5 3 12 12 N 1.39719 * 120.07063 * 0.02562 * 11 6 5 13 13 C 1.34783 * 119.99844 * 154.87999 * 12 11 6 14 14 O 1.21374 * 119.99884 * 354.48042 * 13 12 11 15 15 C 1.49355 * 119.99784 * 174.47361 * 13 12 11 16 16 O 1.21354 * 120.00345 * 0.27926 * 15 13 12 17 17 N 1.34783 * 119.99359 * 180.02562 * 15 13 12 18 18 C 1.46503 * 119.99316 * 180.02562 * 17 15 13 19 19 H 1.09000 * 109.47440 * 325.00028 * 18 17 15 20 20 C 1.52996 * 109.47138 * 85.00473 * 18 17 15 21 21 C 1.50702 * 109.46591 * 204.99874 * 18 17 15 22 22 H 1.07995 * 120.00330 * 0.02562 * 21 18 17 23 23 C 1.37880 * 119.99783 * 180.02562 * 21 18 17 24 24 N 1.31516 * 119.99781 * 0.02562 * 23 21 18 25 25 Si 1.86802 * 120.00002 * 180.02562 * 23 21 18 26 26 H 1.48497 * 109.47190 * 60.00011 * 25 23 21 27 27 H 1.48499 * 109.47062 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.46859 * 300.00139 * 25 23 21 29 29 H 1.09000 * 109.47727 * 59.99709 * 1 2 3 30 30 H 1.09000 * 109.47051 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47548 * 299.99749 * 1 2 3 32 32 H 0.96995 * 120.00235 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.46528 * 60.00242 * 5 3 2 34 34 H 1.08999 * 109.47292 * 300.01213 * 5 3 2 35 35 H 1.08000 * 119.96536 * 359.97438 * 7 6 5 36 36 H 1.07989 * 119.92691 * 179.76510 * 8 7 6 37 37 H 1.07995 * 119.96430 * 180.02562 * 9 8 7 38 38 H 1.08001 * 120.03953 * 180.02562 * 10 9 8 39 39 H 0.97003 * 120.00819 * 334.88147 * 12 11 6 40 40 H 0.96994 * 120.00018 * 0.02562 * 17 15 13 41 41 H 1.09002 * 109.47388 * 299.99878 * 20 18 17 42 42 H 1.09007 * 109.47002 * 59.99241 * 20 18 17 43 43 H 1.08994 * 109.47526 * 179.97438 * 20 18 17 44 44 H 0.97008 * 119.99412 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6458 1.1674 0.0006 6 6 4.1480 2.5882 0.0011 7 6 4.4721 3.2074 -1.1901 8 6 4.9380 4.5093 -1.1901 9 6 5.0762 5.1977 0.0016 10 6 4.7496 4.5863 1.1957 11 6 4.2807 3.2784 1.1993 12 7 3.9493 2.6566 2.4058 13 6 4.5166 3.0715 3.5559 14 8 5.3883 3.9158 3.5325 15 6 4.0726 2.4923 4.8590 16 8 3.2046 1.6446 4.8820 17 7 4.6397 2.9076 6.0090 18 6 4.2046 2.3391 7.2872 19 1 3.1351 2.1323 7.2477 20 6 4.9659 1.0389 7.5527 21 6 4.4858 3.3210 8.3953 22 1 4.9425 4.2733 8.1700 23 6 4.1600 3.0035 9.6969 24 7 3.6043 1.8435 9.9714 25 14 4.5079 4.2209 11.0704 26 1 3.7681 5.4824 10.8129 27 1 4.0681 3.6441 12.3662 28 1 5.9648 4.5035 11.1239 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.9500 -0.8400 -0.0004 33 1 4.0094 0.6534 -0.8892 34 1 4.0088 0.6536 0.8907 35 1 4.3658 2.6727 -2.1224 36 1 5.1943 4.9898 -2.1227 37 1 5.4399 6.2145 -0.0019 38 1 4.8573 5.1246 2.1259 39 1 3.3109 1.9263 2.4159 40 1 5.3358 3.5828 5.9904 41 1 4.7627 0.3286 6.7512 42 1 6.0355 1.2457 7.5921 43 1 4.6426 0.6161 8.5038 44 1 3.3747 1.6204 10.8871 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326089710.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:26 Heat of formation + Delta-G solvation = -76.369860 kcal Electronic energy + Delta-G solvation = -28261.072706 eV Core-core repulsion = 24178.618805 eV Total energy + Delta-G solvation = -4082.453901 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.08488 -39.92201 -38.92569 -37.85299 -35.41548 -34.82648 -34.62817 -32.95710 -32.42046 -30.02903 -29.16140 -28.62877 -26.13806 -25.37571 -24.84881 -22.78796 -21.83811 -20.73716 -20.57593 -19.64097 -18.70082 -17.61461 -17.39460 -16.65743 -16.38891 -15.89995 -15.78506 -15.64831 -15.26324 -15.11203 -14.65718 -14.28839 -14.09135 -14.00219 -13.59344 -13.40724 -13.28354 -13.14999 -12.60748 -12.52590 -12.49970 -12.30964 -11.83409 -11.75863 -11.40468 -11.20313 -11.01866 -11.01701 -10.81326 -10.52836 -10.37931 -10.28859 -10.18074 -9.39856 -9.18805 -9.10519 -8.83034 -8.64480 -8.18564 -8.09422 -6.19304 -4.29064 1.06060 1.31668 1.93388 2.39430 2.64595 2.96770 3.24563 3.29203 3.31635 3.56683 3.82790 4.04543 4.31811 4.36761 4.60545 4.65641 4.94367 4.99875 5.01662 5.06488 5.13298 5.14344 5.26319 5.32340 5.52311 5.55645 5.57443 5.91705 6.09590 6.15207 6.28510 6.38579 6.50482 6.68791 6.80986 6.94754 6.98935 7.07974 7.17467 7.18583 7.37240 7.59358 7.74226 7.86818 7.96949 8.02394 8.39943 8.57651 8.82008 9.38039 10.86719 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014466 B = 0.002837 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.143749 B = 9866.240952 C =11274.891631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.737 5.737 3 C 0.507 3.493 4 O -0.523 6.523 5 C -0.105 4.105 6 C -0.100 4.100 7 C -0.086 4.086 8 C -0.140 4.140 9 C -0.096 4.096 10 C -0.130 4.130 11 C 0.169 3.831 12 N -0.647 5.647 13 C 0.507 3.493 14 O -0.500 6.500 15 C 0.494 3.506 16 O -0.535 6.535 17 N -0.666 5.666 18 C 0.262 3.738 19 H 0.054 0.946 20 C -0.148 4.148 21 C -0.538 4.538 22 H 0.064 0.936 23 C 0.068 3.932 24 N -0.884 5.884 25 Si 0.905 3.095 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.275 1.275 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.402 0.598 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.147 0.853 39 H 0.419 0.581 40 H 0.403 0.597 41 H 0.016 0.984 42 H 0.030 0.970 43 H 0.095 0.905 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.277 -3.535 -23.024 23.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.390 5.390 3 C 0.292 3.708 4 O -0.398 6.398 5 C -0.145 4.145 6 C -0.103 4.103 7 C -0.105 4.105 8 C -0.159 4.159 9 C -0.115 4.115 10 C -0.150 4.150 11 C 0.074 3.926 12 N -0.292 5.292 13 C 0.290 3.710 14 O -0.374 6.374 15 C 0.272 3.728 16 O -0.414 6.414 17 N -0.315 5.315 18 C 0.161 3.839 19 H 0.072 0.928 20 C -0.207 4.207 21 C -0.576 4.576 22 H 0.082 0.918 23 C -0.135 4.135 24 N -0.521 5.521 25 Si 0.732 3.268 26 H -0.200 1.200 27 H -0.211 1.211 28 H -0.200 1.200 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.236 0.764 33 H 0.127 0.873 34 H 0.120 0.880 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.165 0.835 39 H 0.256 0.744 40 H 0.237 0.763 41 H 0.035 0.965 42 H 0.049 0.951 43 H 0.113 0.887 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.275 -2.892 -22.698 22.883 hybrid contribution 0.330 0.060 0.730 0.803 sum 0.055 -2.832 -21.968 22.150 Atomic orbital electron populations 1.21554 0.79413 1.02294 1.02507 1.45801 1.07951 1.08663 1.76537 1.20673 0.89931 0.83840 0.76309 1.90767 1.70156 1.31068 1.47769 1.20626 0.92234 0.95959 1.05676 1.18921 1.04466 0.94485 0.92465 1.20706 0.98412 0.95135 0.96253 1.21048 1.01886 0.94882 0.98108 1.21056 0.98762 0.99797 0.91862 1.21419 1.00647 0.92859 1.00080 1.17591 0.98686 0.92067 0.84288 1.43261 1.44151 1.36891 1.04875 1.20992 0.81590 0.82600 0.85824 1.90692 1.28844 1.30718 1.87139 1.19661 0.84055 0.84158 0.84876 1.90726 1.31486 1.32289 1.86898 1.46506 1.38000 1.40490 1.06529 1.18984 0.96223 0.91719 0.76964 0.92789 1.22099 0.98726 0.97635 1.02215 1.21160 1.42792 1.02253 0.91432 0.91753 1.24875 0.94452 0.95589 0.98625 1.69884 1.40832 1.21056 1.20309 0.86442 0.78819 0.80955 0.80548 1.20048 1.21070 1.20023 0.92308 0.90603 0.91905 0.76401 0.87287 0.87992 0.85918 0.86015 0.85663 0.83515 0.74364 0.76283 0.96502 0.95062 0.88678 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 10.70 59.84 0.64 1.29 16 2 N -0.74 -5.72 5.71 -67.08 -0.38 -6.10 16 3 C 0.51 5.50 7.54 -10.98 -0.08 5.41 16 4 O -0.52 -8.02 16.03 5.56 0.09 -7.93 16 5 C -0.11 -0.93 5.21 -29.04 -0.15 -1.08 16 6 C -0.10 -1.19 4.39 -104.42 -0.46 -1.64 16 7 C -0.09 -0.90 9.68 -39.61 -0.38 -1.28 16 8 C -0.14 -1.46 10.04 -39.54 -0.40 -1.85 16 9 C -0.10 -1.13 10.04 -39.61 -0.40 -1.53 16 10 C -0.13 -1.88 8.71 -39.38 -0.34 -2.22 16 11 C 0.17 2.43 6.41 -83.75 -0.54 1.89 16 12 N -0.65 -9.85 4.97 -10.29 -0.05 -9.91 16 13 C 0.51 8.91 7.69 -11.63 -0.09 8.82 16 14 O -0.50 -9.15 13.63 5.48 0.07 -9.07 16 15 C 0.49 10.03 7.85 -11.63 -0.09 9.94 16 16 O -0.54 -11.92 16.15 5.49 0.09 -11.83 16 17 N -0.67 -14.30 5.06 -55.39 -0.28 -14.59 16 18 C 0.26 6.57 2.56 -69.08 -0.18 6.39 16 19 H 0.05 1.53 7.58 -51.93 -0.39 1.13 16 20 C -0.15 -3.58 9.26 37.16 0.34 -3.23 16 21 C -0.54 -14.19 8.73 -34.44 -0.30 -14.49 16 22 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 23 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 24 N -0.88 -24.37 11.32 55.43 0.63 -23.74 16 25 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.40 1.81 8.83 -40.82 -0.36 1.45 16 33 H 0.11 0.60 8.05 -51.93 -0.42 0.18 16 34 H 0.10 0.82 7.26 -51.93 -0.38 0.44 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 37 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.15 2.31 5.79 -52.49 -0.30 2.01 16 39 H 0.42 6.07 6.76 -40.82 -0.28 5.79 16 40 H 0.40 8.03 8.01 -40.82 -0.33 7.70 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 44 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 377.15 15.07 5.68 5.68 Total: -1.00 -33.12 377.15 -7.39 -40.51 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -5.69 Total: 13.33 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: -2.52 Total: 8.13 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.09 Total: -54.34 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: 0.25 Total: -28.83 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.12 -7.39 -40.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326089710.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.859 kcal (2) G-P(sol) polarization free energy of solvation -33.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds