Wall clock time and date at job start Tue Mar 31 2020 18:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34780 * 119.99736 * 2 1 4 4 O 1.21279 * 120.00218 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00130 * 179.97438 * 3 2 1 6 6 C 1.50695 * 109.47176 * 180.02562 * 5 3 2 7 7 C 1.38114 * 120.04132 * 265.25859 * 6 5 3 8 8 C 1.38278 * 120.07848 * 180.25384 * 7 6 5 9 9 C 1.38315 * 120.14888 * 359.74679 * 8 7 6 10 10 C 1.38074 * 120.07819 * 0.02562 * 9 8 7 11 11 C 1.38917 * 120.03802 * 85.00802 * 6 5 3 12 12 N 1.39719 * 120.07063 * 0.02562 * 11 6 5 13 13 C 1.34783 * 119.99844 * 154.87999 * 12 11 6 14 14 O 1.21374 * 119.99884 * 354.48042 * 13 12 11 15 15 C 1.49355 * 119.99784 * 174.47361 * 13 12 11 16 16 O 1.21354 * 120.00345 * 0.27926 * 15 13 12 17 17 N 1.34783 * 119.99359 * 180.02562 * 15 13 12 18 18 C 1.46503 * 119.99316 * 180.02562 * 17 15 13 19 19 H 1.09000 * 109.47440 * 325.00028 * 18 17 15 20 20 C 1.52996 * 109.47138 * 85.00473 * 18 17 15 21 21 C 1.50702 * 109.46591 * 204.99874 * 18 17 15 22 22 H 1.07995 * 120.00330 * 0.02562 * 21 18 17 23 23 C 1.37880 * 119.99783 * 180.02562 * 21 18 17 24 24 N 1.31516 * 119.99781 * 0.02562 * 23 21 18 25 25 Si 1.86802 * 120.00002 * 180.02562 * 23 21 18 26 26 H 1.48497 * 109.47190 * 60.00011 * 25 23 21 27 27 H 1.48499 * 109.47062 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.46859 * 300.00139 * 25 23 21 29 29 H 1.09000 * 109.47727 * 59.99709 * 1 2 3 30 30 H 1.09000 * 109.47051 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47548 * 299.99749 * 1 2 3 32 32 H 0.96995 * 120.00235 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.46528 * 60.00242 * 5 3 2 34 34 H 1.08999 * 109.47292 * 300.01213 * 5 3 2 35 35 H 1.08000 * 119.96536 * 359.97438 * 7 6 5 36 36 H 1.07989 * 119.92691 * 179.76510 * 8 7 6 37 37 H 1.07995 * 119.96430 * 180.02562 * 9 8 7 38 38 H 1.08001 * 120.03953 * 180.02562 * 10 9 8 39 39 H 0.97003 * 120.00819 * 334.88147 * 12 11 6 40 40 H 0.96994 * 120.00018 * 0.02562 * 17 15 13 41 41 H 1.09002 * 109.47388 * 299.99878 * 20 18 17 42 42 H 1.09007 * 109.47002 * 59.99241 * 20 18 17 43 43 H 1.08994 * 109.47526 * 179.97438 * 20 18 17 44 44 H 0.97008 * 119.99412 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6458 1.1674 0.0006 6 6 4.1480 2.5882 0.0011 7 6 4.4721 3.2074 -1.1901 8 6 4.9380 4.5093 -1.1901 9 6 5.0762 5.1977 0.0016 10 6 4.7496 4.5863 1.1957 11 6 4.2807 3.2784 1.1993 12 7 3.9493 2.6566 2.4058 13 6 4.5166 3.0715 3.5559 14 8 5.3883 3.9158 3.5325 15 6 4.0726 2.4923 4.8590 16 8 3.2046 1.6446 4.8820 17 7 4.6397 2.9076 6.0090 18 6 4.2046 2.3391 7.2872 19 1 3.1351 2.1323 7.2477 20 6 4.9659 1.0389 7.5527 21 6 4.4858 3.3210 8.3953 22 1 4.9425 4.2733 8.1700 23 6 4.1600 3.0035 9.6969 24 7 3.6043 1.8435 9.9714 25 14 4.5079 4.2209 11.0704 26 1 3.7681 5.4824 10.8129 27 1 4.0681 3.6441 12.3662 28 1 5.9648 4.5035 11.1239 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.9500 -0.8400 -0.0004 33 1 4.0094 0.6534 -0.8892 34 1 4.0088 0.6536 0.8907 35 1 4.3658 2.6727 -2.1224 36 1 5.1943 4.9898 -2.1227 37 1 5.4399 6.2145 -0.0019 38 1 4.8573 5.1246 2.1259 39 1 3.3109 1.9263 2.4159 40 1 5.3358 3.5828 5.9904 41 1 4.7627 0.3286 6.7512 42 1 6.0355 1.2457 7.5921 43 1 4.6426 0.6161 8.5038 44 1 3.3747 1.6204 10.8871 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326089710.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:25 Heat of formation + Delta-G solvation = -101.229693 kcal Electronic energy + Delta-G solvation = -28262.150709 eV Core-core repulsion = 24178.618805 eV Total energy + Delta-G solvation = -4083.531904 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.31697 -41.01399 -40.15304 -39.15606 -37.10297 -36.02882 -35.59348 -34.39087 -33.78070 -31.28443 -30.80719 -29.46468 -27.40500 -26.89809 -26.24343 -23.98595 -22.89069 -22.25451 -21.42063 -21.27229 -20.15153 -18.73978 -18.27641 -18.17569 -17.62388 -17.27046 -17.12866 -16.92399 -16.58403 -16.22723 -15.96262 -15.69616 -15.18321 -15.11053 -14.88132 -14.67164 -14.46282 -14.18516 -14.05029 -13.80506 -13.56863 -13.21315 -13.09883 -13.06871 -12.93090 -12.85065 -12.73947 -12.32970 -12.27355 -12.22214 -12.11584 -11.62121 -11.19984 -11.07714 -10.69591 -10.60750 -10.13103 -10.03744 -9.74261 -9.13501 -8.22350 -6.39943 -0.10998 0.39915 0.67249 1.23255 1.45207 1.46350 1.54574 1.59436 2.05949 2.28986 2.37064 2.63398 2.90910 3.08454 3.39232 3.58004 3.85064 4.00140 4.16767 4.27339 4.37264 4.47702 4.48804 4.60109 4.62230 4.67310 4.67725 4.86011 4.95177 4.98675 5.06280 5.16332 5.26301 5.29844 5.39706 5.43227 5.48791 5.57094 5.60541 5.73729 5.95124 6.00830 6.03548 6.43379 6.54352 6.60770 6.70220 7.00597 7.25570 7.32152 8.83665 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014466 B = 0.002837 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.143749 B = 9866.240952 C =11274.891631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.723 5.723 3 C 0.503 3.497 4 O -0.576 6.576 5 C -0.102 4.102 6 C -0.101 4.101 7 C -0.088 4.088 8 C -0.132 4.132 9 C -0.104 4.104 10 C -0.155 4.155 11 C 0.134 3.866 12 N -0.632 5.632 13 C 0.514 3.486 14 O -0.510 6.510 15 C 0.495 3.505 16 O -0.557 6.557 17 N -0.668 5.668 18 C 0.268 3.732 19 H 0.014 0.986 20 C -0.135 4.135 21 C -0.556 4.556 22 H 0.070 0.930 23 C 0.021 3.979 24 N -0.912 5.912 25 Si 0.972 3.028 26 H -0.273 1.273 27 H -0.282 1.282 28 H -0.265 1.265 29 H 0.053 0.947 30 H 0.110 0.890 31 H 0.039 0.961 32 H 0.421 0.579 33 H 0.151 0.849 34 H 0.109 0.891 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.144 0.856 38 H 0.124 0.876 39 H 0.421 0.579 40 H 0.411 0.589 41 H 0.021 0.979 42 H 0.040 0.960 43 H 0.074 0.926 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.283 -3.799 -25.284 25.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.376 5.376 3 C 0.290 3.710 4 O -0.455 6.455 5 C -0.142 4.142 6 C -0.104 4.104 7 C -0.106 4.106 8 C -0.151 4.151 9 C -0.123 4.123 10 C -0.175 4.175 11 C 0.040 3.960 12 N -0.277 5.277 13 C 0.297 3.703 14 O -0.385 6.385 15 C 0.275 3.725 16 O -0.437 6.437 17 N -0.317 5.317 18 C 0.166 3.834 19 H 0.032 0.968 20 C -0.194 4.194 21 C -0.594 4.594 22 H 0.088 0.912 23 C -0.180 4.180 24 N -0.550 5.550 25 Si 0.796 3.204 26 H -0.198 1.198 27 H -0.207 1.207 28 H -0.190 1.190 29 H 0.072 0.928 30 H 0.128 0.872 31 H 0.058 0.942 32 H 0.257 0.743 33 H 0.169 0.831 34 H 0.127 0.873 35 H 0.175 0.825 36 H 0.173 0.827 37 H 0.161 0.839 38 H 0.142 0.858 39 H 0.259 0.741 40 H 0.246 0.754 41 H 0.040 0.960 42 H 0.060 0.940 43 H 0.093 0.907 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.747 -3.198 -25.008 25.223 hybrid contribution -0.045 0.106 1.273 1.278 sum 0.702 -3.092 -23.735 23.946 Atomic orbital electron populations 1.21639 0.79235 1.04130 1.01136 1.45748 1.08221 1.08794 1.74837 1.21044 0.90764 0.83747 0.75481 1.90749 1.71261 1.32977 1.50536 1.20728 0.90698 0.94723 1.08035 1.19286 1.03402 0.95828 0.91874 1.21200 0.97043 0.95369 0.96986 1.21497 0.99982 0.94875 0.98732 1.21325 0.98591 1.00813 0.91546 1.21415 1.02376 0.93349 1.00400 1.17878 1.00977 0.92662 0.84488 1.43086 1.43465 1.36500 1.04677 1.20276 0.81955 0.82709 0.85387 1.90697 1.29487 1.31207 1.87115 1.20104 0.83252 0.83512 0.85672 1.90702 1.32300 1.33239 1.87473 1.46268 1.38517 1.40890 1.06013 1.18641 0.94075 0.92283 0.78404 0.96815 1.21920 0.99022 0.97222 1.01247 1.21470 1.43061 1.02754 0.92129 0.91181 1.25723 0.94061 0.97249 1.00941 1.70010 1.41441 1.22640 1.20879 0.85399 0.79010 0.78537 0.77436 1.19772 1.20711 1.19008 0.92785 0.87152 0.94239 0.74265 0.83125 0.87288 0.82461 0.82689 0.83853 0.85804 0.74137 0.75352 0.95958 0.94045 0.90689 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 10.70 127.77 1.37 2.51 16 2 N -0.72 -9.90 5.71 -484.52 -2.77 -12.67 16 3 C 0.50 10.21 7.54 87.66 0.66 10.87 16 4 O -0.58 -17.61 16.03 -3.03 -0.05 -17.66 16 5 C -0.10 -1.55 5.21 29.10 0.15 -1.40 16 6 C -0.10 -2.20 4.39 -19.73 -0.09 -2.29 16 7 C -0.09 -1.54 9.68 22.25 0.22 -1.33 16 8 C -0.13 -2.34 10.04 22.30 0.22 -2.12 16 9 C -0.10 -2.32 10.04 22.25 0.22 -2.10 16 10 C -0.16 -4.53 8.71 22.40 0.20 -4.34 16 11 C 0.13 3.83 6.41 38.22 0.24 4.07 16 12 N -0.63 -19.60 4.97 -304.83 -1.52 -21.11 16 13 C 0.51 18.57 7.69 87.24 0.67 19.24 16 14 O -0.51 -19.15 13.63 -3.32 -0.05 -19.19 16 15 C 0.49 20.71 7.85 87.24 0.68 21.39 16 16 O -0.56 -25.64 16.15 -3.26 -0.05 -25.69 16 17 N -0.67 -29.43 5.06 -447.52 -2.27 -31.69 16 18 C 0.27 13.85 2.56 44.24 0.11 13.96 16 19 H 0.01 0.83 7.58 -2.39 -0.02 0.81 16 20 C -0.14 -6.67 9.26 71.98 0.67 -6.01 16 21 C -0.56 -29.72 8.73 25.60 0.22 -29.50 16 22 H 0.07 3.58 7.74 -2.91 -0.02 3.55 16 23 C 0.02 1.13 5.30 84.66 0.45 1.58 16 24 N -0.91 -51.15 11.32 21.45 0.24 -50.91 16 25 Si 0.97 42.05 29.54 68.60 2.03 44.07 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 28 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.42 2.63 8.83 -92.71 -0.82 1.81 16 33 H 0.15 0.99 8.05 -2.39 -0.02 0.97 16 34 H 0.11 1.53 7.26 -2.39 -0.02 1.51 16 35 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.16 1.69 8.06 -2.92 -0.02 1.67 16 37 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 38 H 0.12 4.10 5.79 -2.91 -0.02 4.09 16 39 H 0.42 12.40 6.76 -92.71 -0.63 11.78 16 40 H 0.41 16.71 8.01 -92.71 -0.74 15.96 16 41 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 43 H 0.07 4.01 6.07 -2.39 -0.01 4.00 16 44 H 0.27 14.23 8.31 -92.70 -0.77 13.46 16 Total: -1.00 -74.40 377.15 0.46 -73.94 By element: Atomic # 1 Polarization: 37.48 SS G_CDS: -1.11 Total: 36.36 kcal Atomic # 6 Polarization: 18.55 SS G_CDS: 6.00 Total: 24.56 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -6.31 Total: -116.39 kcal Atomic # 8 Polarization: -62.39 SS G_CDS: -0.15 Total: -62.54 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -74.40 0.46 -73.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326089710.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.290 kcal (2) G-P(sol) polarization free energy of solvation -74.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds