Wall clock time and date at job start Tue Mar 31 2020 18:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47349 * 2 1 4 4 N 1.46489 * 109.47170 * 239.99520 * 2 1 3 5 5 C 1.36932 * 120.00249 * 85.00067 * 4 2 1 6 6 H 1.08002 * 119.99897 * 359.97438 * 5 4 2 7 7 C 1.38814 * 120.00403 * 179.97438 * 5 4 2 8 8 N 1.31618 * 119.99976 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00183 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47265 * 89.99851 * 9 7 5 11 11 H 1.48496 * 109.47149 * 209.99914 * 9 7 5 12 12 H 1.48504 * 109.47240 * 330.00266 * 9 7 5 13 13 C 1.53001 * 109.46921 * 119.99230 * 2 1 3 14 14 H 1.09008 * 109.47091 * 184.99848 * 13 2 1 15 15 C 1.53000 * 109.47143 * 65.00470 * 13 2 1 16 16 N 1.46500 * 109.47495 * 305.00030 * 13 2 1 17 17 C 1.34781 * 120.00007 * 204.99581 * 16 13 2 18 18 O 1.21280 * 120.00152 * 0.02562 * 17 16 13 19 19 C 1.50694 * 119.99784 * 180.02562 * 17 16 13 20 20 N 1.46501 * 109.47257 * 180.02562 * 19 17 16 21 21 C 1.47025 * 120.99463 * 84.99781 * 20 19 17 22 22 C 1.52759 * 109.48151 * 122.55698 * 21 20 19 23 23 C 1.52677 * 110.66828 * 64.31676 * 22 21 20 24 24 C 1.53278 * 109.77053 * 289.71502 * 23 22 21 25 25 S 1.66407 * 120.99436 * 265.02588 * 20 19 17 26 26 O 1.42098 * 104.53612 * 344.36336 * 25 20 19 27 27 O 1.42093 * 104.53429 * 112.73414 * 25 20 19 28 28 H 1.09003 * 109.47310 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47567 * 300.00296 * 1 2 3 30 30 H 1.08994 * 109.47204 * 60.00310 * 1 2 3 31 31 H 0.96999 * 120.00032 * 264.99886 * 4 2 1 32 32 H 0.96997 * 120.00432 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47631 * 179.97438 * 15 13 2 34 34 H 1.09008 * 109.46619 * 299.99667 * 15 13 2 35 35 H 1.08998 * 109.47265 * 59.99489 * 15 13 2 36 36 H 0.97003 * 119.99686 * 25.00254 * 16 13 2 37 37 H 1.09003 * 109.47417 * 60.00526 * 19 17 16 38 38 H 1.09002 * 109.47535 * 300.00616 * 19 17 16 39 39 H 1.09002 * 109.46956 * 242.56107 * 21 20 19 40 40 H 1.09001 * 109.46945 * 2.55864 * 21 20 19 41 41 H 1.09001 * 109.23619 * 184.62044 * 22 21 20 42 42 H 1.09000 * 109.23438 * 304.00477 * 22 21 20 43 43 H 1.09002 * 109.41802 * 169.62423 * 23 22 21 44 44 H 1.09000 * 109.42065 * 49.80960 * 23 22 21 45 45 H 1.08999 * 109.67800 * 302.03532 * 24 23 22 46 46 H 1.08995 * 109.68202 * 181.48651 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1491 -0.0077 -2.3756 6 1 1.8919 1.0401 -2.4243 7 6 2.6123 -0.6620 -3.5089 8 7 2.9254 -1.9390 -3.4497 9 14 2.7901 0.2695 -5.1182 10 1 4.1519 0.8557 -5.2031 11 1 2.5805 -0.6622 -6.2553 12 1 1.7793 1.3559 -5.1756 13 6 2.0399 -0.7211 1.2494 14 1 3.1263 -0.6442 1.2953 15 6 1.6353 -2.1953 1.1882 16 7 1.4558 -0.1034 2.4424 17 6 2.0912 -0.1935 3.6277 18 8 3.1467 -0.7855 3.7064 19 6 1.4900 0.4414 4.8550 20 7 2.3654 0.2051 6.0057 21 6 3.5032 1.0930 6.2864 22 6 3.3621 1.6728 7.6926 23 6 3.4441 0.5671 8.7421 24 6 2.1836 -0.3026 8.6785 25 16 2.1022 -1.0767 7.0337 26 8 0.7780 -1.5017 6.7421 27 8 3.2147 -1.9356 6.8249 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.2490 -1.6318 -1.1524 32 1 3.2494 -2.3962 -4.2414 33 1 1.9989 -2.7092 2.0780 34 1 0.5489 -2.2722 1.1423 35 1 2.0699 -2.6549 0.3005 36 1 0.6117 0.3704 2.3794 37 1 0.5103 0.0040 5.0476 38 1 1.3836 1.5142 4.6941 39 1 4.4318 0.5262 6.2185 40 1 3.5189 1.9045 5.5587 41 1 4.1620 2.3927 7.8661 42 1 2.4002 2.1784 7.7777 43 1 3.5269 1.0135 9.7331 44 1 4.3211 -0.0510 8.5496 45 1 1.3013 0.3177 8.8363 46 1 2.2316 -1.0753 9.4458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329086525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:52 Heat of formation + Delta-G solvation = -88.127672 kcal Electronic energy + Delta-G solvation = -27733.515242 eV Core-core repulsion = 23785.995435 eV Total energy + Delta-G solvation = -3947.519807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -39.78280 -37.94068 -37.30461 -36.72522 -36.09443 -34.35929 -33.85173 -31.82581 -30.11047 -29.25919 -28.17519 -27.15612 -24.71931 -24.31490 -23.06932 -21.73653 -20.59514 -19.29362 -18.89386 -17.73445 -17.51033 -17.27666 -16.96558 -16.14456 -15.76057 -15.30505 -14.95043 -14.62577 -14.55414 -14.41033 -14.30037 -14.10258 -13.77315 -13.38600 -12.93783 -12.77170 -12.68951 -12.42283 -12.33548 -12.23151 -12.10780 -11.97052 -11.81208 -11.58000 -11.49576 -11.36116 -11.24839 -10.92856 -10.80975 -10.76829 -10.44051 -10.23776 -10.10728 -9.94759 -9.67692 -9.05649 -8.92433 -8.73371 -6.98796 -5.76883 -3.06436 -0.06639 2.22585 2.79184 3.32299 3.43785 3.48454 3.50467 3.54420 3.78660 3.93978 4.20746 4.32175 4.55086 4.59632 4.66406 4.81140 4.86555 4.98020 5.11136 5.17628 5.28983 5.33800 5.40009 5.43645 5.51603 5.64644 5.66139 5.69805 5.72944 5.88629 6.11502 6.15074 6.20817 6.34566 6.44278 6.52763 6.69330 6.74760 6.97531 7.11064 7.69215 7.73739 8.40841 8.44502 9.52678 10.08823 10.43460 11.45738 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.028085 B = 0.002418 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.735810 B =11579.204121 C =11785.520626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.169 3.831 3 H 0.051 0.949 4 N -0.720 5.720 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.908 3.092 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.136 3.864 14 H 0.087 0.913 15 C -0.160 4.160 16 N -0.719 5.719 17 C 0.482 3.518 18 O -0.523 6.523 19 C 0.106 3.894 20 N -0.977 5.977 21 C 0.116 3.884 22 C -0.156 4.156 23 C -0.111 4.111 24 C -0.619 4.619 25 S 2.600 3.400 26 O -0.959 6.959 27 O -0.936 6.936 28 H 0.053 0.947 29 H 0.033 0.967 30 H 0.056 0.944 31 H 0.387 0.613 32 H 0.256 0.744 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.397 0.603 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.134 0.866 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.990 9.189 27.991 29.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.058 3.942 3 H 0.069 0.931 4 N -0.363 5.363 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.739 3.261 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.031 3.969 14 H 0.106 0.894 15 C -0.219 4.219 16 N -0.373 5.373 17 C 0.265 3.735 18 O -0.399 6.399 19 C -0.024 4.024 20 N -0.814 5.814 21 C -0.009 4.009 22 C -0.194 4.194 23 C -0.149 4.149 24 C -0.749 4.749 25 S 2.693 3.307 26 O -0.949 6.949 27 O -0.925 6.925 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.222 0.778 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.233 0.767 37 H 0.138 0.862 38 H 0.127 0.873 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.153 0.847 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.353 7.957 27.636 28.953 hybrid contribution -0.275 0.934 -0.572 1.129 sum -3.629 8.891 27.064 28.717 Atomic orbital electron populations 1.22538 0.99327 1.01320 0.99686 1.20352 0.92157 0.95492 0.86183 0.93138 1.42463 1.78200 1.10829 1.04849 1.19214 1.36845 0.93911 0.87173 0.91159 1.24751 1.02021 0.95987 0.98111 1.69658 1.50614 1.08642 1.29017 0.86182 0.77765 0.78546 0.83611 1.21727 1.21793 1.20805 1.21327 0.99012 0.92883 0.83653 0.89450 1.22149 1.01521 0.95895 1.02303 1.46253 1.25800 1.56868 1.08417 1.21275 0.85854 0.81241 0.85172 1.90764 1.22040 1.41839 1.85231 1.21208 0.94282 1.02912 0.83973 1.57088 1.38915 1.47470 1.37977 1.21535 0.88864 0.94594 0.95910 1.22135 1.04447 0.98706 0.94162 1.21321 0.94941 0.96927 1.01699 1.30562 1.07436 1.12682 1.24171 1.05510 0.74562 0.73907 0.76745 1.93580 1.38431 1.79848 1.83073 1.93650 1.53503 1.62206 1.83176 0.92779 0.94821 0.92448 0.77750 0.93426 0.93086 0.92495 0.90557 0.76692 0.86172 0.87294 0.90037 0.89006 0.88914 0.90371 0.89541 0.89752 0.84749 0.84992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.01 37.16 0.33 -2.47 16 2 C 0.17 3.25 2.93 -67.94 -0.20 3.05 16 3 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 4 N -0.72 -17.76 5.03 -53.43 -0.27 -18.03 16 5 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 9 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 10 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.14 2.40 2.62 -67.93 -0.18 2.22 16 14 H 0.09 1.77 7.58 -51.92 -0.39 1.38 16 15 C -0.16 -2.89 9.00 37.16 0.33 -2.55 16 16 N -0.72 -9.91 4.99 -53.80 -0.27 -10.18 16 17 C 0.48 6.91 7.86 -10.99 -0.09 6.82 16 18 O -0.52 -9.90 16.09 5.56 0.09 -9.82 16 19 C 0.11 1.00 6.13 -5.20 -0.03 0.97 16 20 N -0.98 -9.37 2.47 -115.40 -0.29 -9.65 16 21 C 0.12 0.85 6.35 -3.88 -0.02 0.82 16 22 C -0.16 -0.65 5.80 -27.02 -0.16 -0.81 16 23 C -0.11 -0.51 5.78 -26.75 -0.15 -0.67 16 24 C -0.62 -3.33 6.59 37.30 0.25 -3.09 16 25 S 2.60 27.63 5.73 -107.50 -0.62 27.02 16 26 O -0.96 -12.61 16.51 -57.50 -0.95 -13.56 16 27 O -0.94 -14.21 18.10 -57.50 -1.04 -15.25 16 28 H 0.05 0.93 6.56 -51.93 -0.34 0.59 16 29 H 0.03 0.42 6.29 -51.93 -0.33 0.10 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.39 10.16 5.77 -40.82 -0.24 9.92 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.94 6.56 -51.92 -0.34 0.60 16 35 H 0.08 1.51 6.29 -51.93 -0.33 1.19 16 36 H 0.40 4.25 6.58 -40.82 -0.27 3.98 16 37 H 0.12 1.03 6.88 -51.93 -0.36 0.67 16 38 H 0.11 0.62 8.07 -51.93 -0.42 0.20 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 0.57 7.92 -51.93 -0.41 0.16 16 41 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.08 0.24 8.11 -51.93 -0.42 -0.18 16 43 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.08 0.45 8.13 -51.93 -0.42 0.02 16 45 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.13 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 376.32 15.07 5.67 5.67 Total: -1.00 -38.35 376.32 -9.32 -47.66 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -7.19 Total: 9.15 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -0.16 Total: -2.88 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: -0.10 Total: -65.28 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -1.90 Total: -38.63 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 16 Polarization: 27.63 SS G_CDS: -0.62 Total: 27.02 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -38.35 -9.32 -47.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329086525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.464 kcal (2) G-P(sol) polarization free energy of solvation -38.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds