Wall clock time and date at job start Tue Mar 31 2020 18:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47349 * 2 1 4 4 N 1.46489 * 109.47170 * 239.99520 * 2 1 3 5 5 C 1.36932 * 120.00249 * 85.00067 * 4 2 1 6 6 H 1.08002 * 119.99897 * 359.97438 * 5 4 2 7 7 C 1.38814 * 120.00403 * 179.97438 * 5 4 2 8 8 N 1.31618 * 119.99976 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00183 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47265 * 89.99851 * 9 7 5 11 11 H 1.48496 * 109.47149 * 209.99914 * 9 7 5 12 12 H 1.48504 * 109.47240 * 330.00266 * 9 7 5 13 13 C 1.53001 * 109.46921 * 119.99230 * 2 1 3 14 14 H 1.09008 * 109.47091 * 184.99848 * 13 2 1 15 15 C 1.53000 * 109.47143 * 65.00470 * 13 2 1 16 16 N 1.46500 * 109.47495 * 305.00030 * 13 2 1 17 17 C 1.34781 * 120.00007 * 204.99581 * 16 13 2 18 18 O 1.21280 * 120.00152 * 0.02562 * 17 16 13 19 19 C 1.50694 * 119.99784 * 180.02562 * 17 16 13 20 20 N 1.46501 * 109.47257 * 180.02562 * 19 17 16 21 21 C 1.47025 * 120.99463 * 84.99781 * 20 19 17 22 22 C 1.52759 * 109.48151 * 122.55698 * 21 20 19 23 23 C 1.52677 * 110.66828 * 64.31676 * 22 21 20 24 24 C 1.53278 * 109.77053 * 289.71502 * 23 22 21 25 25 S 1.66407 * 120.99436 * 265.02588 * 20 19 17 26 26 O 1.42098 * 104.53612 * 344.36336 * 25 20 19 27 27 O 1.42093 * 104.53429 * 112.73414 * 25 20 19 28 28 H 1.09003 * 109.47310 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47567 * 300.00296 * 1 2 3 30 30 H 1.08994 * 109.47204 * 60.00310 * 1 2 3 31 31 H 0.96999 * 120.00032 * 264.99886 * 4 2 1 32 32 H 0.96997 * 120.00432 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47631 * 179.97438 * 15 13 2 34 34 H 1.09008 * 109.46619 * 299.99667 * 15 13 2 35 35 H 1.08998 * 109.47265 * 59.99489 * 15 13 2 36 36 H 0.97003 * 119.99686 * 25.00254 * 16 13 2 37 37 H 1.09003 * 109.47417 * 60.00526 * 19 17 16 38 38 H 1.09002 * 109.47535 * 300.00616 * 19 17 16 39 39 H 1.09002 * 109.46956 * 242.56107 * 21 20 19 40 40 H 1.09001 * 109.46945 * 2.55864 * 21 20 19 41 41 H 1.09001 * 109.23619 * 184.62044 * 22 21 20 42 42 H 1.09000 * 109.23438 * 304.00477 * 22 21 20 43 43 H 1.09002 * 109.41802 * 169.62423 * 23 22 21 44 44 H 1.09000 * 109.42065 * 49.80960 * 23 22 21 45 45 H 1.08999 * 109.67800 * 302.03532 * 24 23 22 46 46 H 1.08995 * 109.68202 * 181.48651 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 2.1491 -0.0077 -2.3756 6 1 1.8919 1.0401 -2.4243 7 6 2.6123 -0.6620 -3.5089 8 7 2.9254 -1.9390 -3.4497 9 14 2.7901 0.2695 -5.1182 10 1 4.1519 0.8557 -5.2031 11 1 2.5805 -0.6622 -6.2553 12 1 1.7793 1.3559 -5.1756 13 6 2.0399 -0.7211 1.2494 14 1 3.1263 -0.6442 1.2953 15 6 1.6353 -2.1953 1.1882 16 7 1.4558 -0.1034 2.4424 17 6 2.0912 -0.1935 3.6277 18 8 3.1467 -0.7855 3.7064 19 6 1.4900 0.4414 4.8550 20 7 2.3654 0.2051 6.0057 21 6 3.5032 1.0930 6.2864 22 6 3.3621 1.6728 7.6926 23 6 3.4441 0.5671 8.7421 24 6 2.1836 -0.3026 8.6785 25 16 2.1022 -1.0767 7.0337 26 8 0.7780 -1.5017 6.7421 27 8 3.2147 -1.9356 6.8249 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.2490 -1.6318 -1.1524 32 1 3.2494 -2.3962 -4.2414 33 1 1.9989 -2.7092 2.0780 34 1 0.5489 -2.2722 1.1423 35 1 2.0699 -2.6549 0.3005 36 1 0.6117 0.3704 2.3794 37 1 0.5103 0.0040 5.0476 38 1 1.3836 1.5142 4.6941 39 1 4.4318 0.5262 6.2185 40 1 3.5189 1.9045 5.5587 41 1 4.1620 2.3927 7.8661 42 1 2.4002 2.1784 7.7777 43 1 3.5269 1.0135 9.7331 44 1 4.3211 -0.0510 8.5496 45 1 1.3013 0.3177 8.8363 46 1 2.2316 -1.0753 9.4458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329086525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:51 Heat of formation + Delta-G solvation = -119.845051 kcal Electronic energy + Delta-G solvation = -27734.890611 eV Core-core repulsion = 23785.995435 eV Total energy + Delta-G solvation = -3948.895176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.99533 -38.76501 -38.36381 -37.82143 -37.00893 -35.58513 -34.98472 -33.56069 -31.33700 -30.23865 -29.79876 -27.96196 -26.16024 -25.35672 -24.63462 -22.18910 -21.81809 -20.69477 -19.79414 -19.42693 -18.48423 -18.30312 -17.86168 -17.04377 -16.67067 -16.59828 -16.21794 -16.05830 -15.81153 -15.42993 -15.16202 -14.91788 -14.88308 -14.64528 -14.46511 -13.98599 -13.65772 -13.42750 -13.30531 -13.20215 -13.12723 -13.11445 -13.00917 -12.79725 -12.68637 -12.62943 -12.50593 -12.13272 -12.01984 -11.93884 -11.86236 -11.65908 -11.58899 -11.34242 -11.12285 -10.94999 -10.07600 -9.89626 -9.03057 -7.93143 -5.22342 -0.78119 1.47758 1.49925 1.50380 1.58127 1.66648 2.21460 2.59024 2.80593 3.20635 3.40729 3.45691 3.76314 3.78908 3.80108 3.94316 3.99862 4.07772 4.12991 4.23590 4.32374 4.40315 4.47103 4.58991 4.60881 4.66784 4.69613 4.87032 4.88519 4.97941 4.98920 5.02426 5.05760 5.17709 5.19410 5.27022 5.37144 5.50652 5.54368 5.59081 5.65293 6.28708 6.63040 7.33005 7.34842 8.09908 8.32324 9.30727 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.028085 B = 0.002418 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.735810 B =11579.204121 C =11785.520626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.168 3.832 3 H 0.052 0.948 4 N -0.736 5.736 5 C -0.236 4.236 6 H 0.080 0.920 7 C -0.080 4.080 8 N -0.972 5.972 9 Si 0.974 3.026 10 H -0.290 1.290 11 H -0.298 1.298 12 H -0.266 1.266 13 C 0.149 3.851 14 H 0.053 0.947 15 C -0.151 4.151 16 N -0.706 5.706 17 C 0.473 3.527 18 O -0.578 6.578 19 C 0.109 3.891 20 N -0.979 5.979 21 C 0.108 3.892 22 C -0.148 4.148 23 C -0.119 4.119 24 C -0.578 4.578 25 S 2.576 3.424 26 O -0.995 6.995 27 O -1.003 7.003 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.044 0.956 31 H 0.374 0.626 32 H 0.250 0.750 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.416 0.584 37 H 0.134 0.866 38 H 0.159 0.841 39 H 0.051 0.949 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.119 0.881 44 H 0.069 0.931 45 H 0.169 0.831 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.961 12.794 30.662 33.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.059 3.941 3 H 0.070 0.930 4 N -0.379 5.379 5 C -0.368 4.368 6 H 0.098 0.902 7 C -0.271 4.271 8 N -0.623 5.623 9 Si 0.803 3.197 10 H -0.217 1.217 11 H -0.225 1.225 12 H -0.190 1.190 13 C 0.043 3.957 14 H 0.071 0.929 15 C -0.210 4.210 16 N -0.361 5.361 17 C 0.259 3.741 18 O -0.456 6.456 19 C -0.020 4.020 20 N -0.816 5.816 21 C -0.017 4.017 22 C -0.186 4.186 23 C -0.157 4.157 24 C -0.713 4.713 25 S 2.676 3.324 26 O -0.985 6.985 27 O -0.993 6.993 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.063 0.937 31 H 0.208 0.792 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.256 0.744 37 H 0.152 0.848 38 H 0.177 0.823 39 H 0.069 0.931 40 H 0.122 0.878 41 H 0.130 0.870 42 H 0.120 0.880 43 H 0.137 0.863 44 H 0.088 0.912 45 H 0.187 0.813 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.380 11.603 30.304 32.893 hybrid contribution 0.365 -0.135 -1.240 1.299 sum -5.015 11.468 29.065 31.645 Atomic orbital electron populations 1.22365 0.96442 1.01525 1.01468 1.20530 0.93953 0.94892 0.84731 0.93021 1.42701 1.78653 1.10524 1.05999 1.19636 1.34795 0.94331 0.88003 0.90177 1.25589 1.03025 0.96884 1.01646 1.69831 1.52669 1.10360 1.29472 0.85125 0.77828 0.77438 0.79270 1.21730 1.22523 1.19016 1.20844 0.97260 0.92732 0.84871 0.92861 1.22043 1.02336 0.96049 1.00557 1.46027 1.26346 1.56556 1.07197 1.22398 0.85112 0.80248 0.86370 1.90755 1.24664 1.44171 1.86044 1.21443 0.93997 1.05257 0.81267 1.57038 1.39621 1.47022 1.37964 1.21734 0.87044 0.94068 0.98821 1.22123 1.06572 0.98617 0.91278 1.21496 0.93735 0.96891 1.03581 1.30285 1.09627 1.13186 1.18226 1.05880 0.72953 0.74283 0.79315 1.93520 1.39204 1.81074 1.84716 1.93572 1.55123 1.65351 1.85252 0.93377 0.89973 0.93704 0.79184 0.94142 0.94035 0.90713 0.93064 0.74428 0.84798 0.82327 0.93053 0.87823 0.86952 0.87956 0.86312 0.91200 0.81290 0.82940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.94 9.01 71.98 0.65 -4.29 16 2 C 0.17 6.38 2.93 44.99 0.13 6.52 16 3 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 4 N -0.74 -37.08 5.03 -322.96 -1.63 -38.71 16 5 C -0.24 -12.99 9.93 84.03 0.83 -12.15 16 6 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 7 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 8 N -0.97 -60.67 13.06 21.65 0.28 -60.39 16 9 Si 0.97 46.40 29.55 68.60 2.03 48.43 16 10 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 11 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 13 C 0.15 5.36 2.62 44.99 0.12 5.48 16 14 H 0.05 2.29 7.58 -2.38 -0.02 2.27 16 15 C -0.15 -5.67 9.00 71.98 0.65 -5.02 16 16 N -0.71 -18.61 4.99 -442.52 -2.21 -20.82 16 17 C 0.47 13.40 7.86 87.65 0.69 14.09 16 18 O -0.58 -22.93 16.09 -3.03 -0.05 -22.98 16 19 C 0.11 1.82 6.13 85.63 0.53 2.34 16 20 N -0.98 -17.48 2.47 -519.02 -1.28 -18.76 16 21 C 0.11 1.41 6.35 86.20 0.55 1.96 16 22 C -0.15 -0.66 5.80 30.41 0.18 -0.48 16 23 C -0.12 -0.67 5.78 30.58 0.18 -0.49 16 24 C -0.58 -4.14 6.59 72.08 0.47 -3.66 16 25 S 2.58 53.93 5.73 -56.49 -0.32 53.61 16 26 O -0.99 -25.91 16.51 -127.68 -2.11 -28.01 16 27 O -1.00 -32.69 18.10 -127.68 -2.31 -35.00 16 28 H 0.05 1.57 6.56 -2.39 -0.02 1.55 16 29 H 0.08 1.75 6.29 -2.38 -0.02 1.73 16 30 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.37 20.55 5.77 -92.71 -0.54 20.01 16 32 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 33 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.07 2.48 6.56 -2.38 -0.02 2.47 16 35 H 0.05 2.17 6.29 -2.39 -0.02 2.15 16 36 H 0.42 7.59 6.58 -92.71 -0.61 6.98 16 37 H 0.13 1.93 6.88 -2.39 -0.02 1.92 16 38 H 0.16 1.06 8.07 -2.39 -0.02 1.04 16 39 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.10 1.06 7.92 -2.39 -0.02 1.04 16 41 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 42 H 0.10 0.04 8.11 -2.39 -0.02 0.03 16 43 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 44 H 0.07 0.64 8.13 -2.39 -0.02 0.62 16 45 H 0.17 0.20 8.14 -2.39 -0.02 0.18 16 46 H 0.15 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -90.67 376.32 -2.30 -92.97 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -0.15 Total: 29.50 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 5.44 Total: 0.17 kcal Atomic # 7 Polarization: -133.85 SS G_CDS: -4.83 Total: -138.68 kcal Atomic # 8 Polarization: -81.53 SS G_CDS: -4.47 Total: -85.99 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Atomic # 16 Polarization: 53.93 SS G_CDS: -0.32 Total: 53.61 kcal Total: -90.67 -2.30 -92.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329086525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.876 kcal (2) G-P(sol) polarization free energy of solvation -90.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds