Wall clock time and date at job start Tue Mar 31 2020 17:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47745 * 2 1 4 4 N 1.46500 * 109.47056 * 239.99836 * 2 1 3 5 5 C 1.34775 * 120.00059 * 85.00363 * 4 2 1 6 6 O 1.21347 * 119.99990 * 0.02562 * 5 4 2 7 7 C 1.49451 * 120.00236 * 180.02562 * 5 4 2 8 8 O 1.21354 * 120.00095 * 0.02562 * 7 5 4 9 9 N 1.34776 * 120.00098 * 179.97438 * 7 5 4 10 10 C 1.47421 * 125.64955 * 359.70003 * 9 7 5 11 11 C 1.55126 * 104.72691 * 155.81486 * 10 9 7 12 12 C 1.55157 * 101.48640 * 37.28937 * 11 10 9 13 13 O 1.42904 * 110.71334 * 82.69892 * 12 11 10 14 14 C 1.50692 * 110.87289 * 205.90344 * 12 11 10 15 15 H 1.07997 * 120.00581 * 118.67320 * 14 12 11 16 16 C 1.37881 * 120.00073 * 298.66947 * 14 12 11 17 17 N 1.31515 * 120.00083 * 183.38785 * 16 14 12 18 18 Si 1.86796 * 119.99739 * 3.39290 * 16 14 12 19 19 H 1.48495 * 109.47583 * 84.83284 * 18 16 14 20 20 H 1.48506 * 109.47300 * 204.83250 * 18 16 14 21 21 H 1.48499 * 109.47291 * 324.83077 * 18 16 14 22 22 C 1.47019 * 125.64978 * 179.97438 * 9 7 5 23 23 C 1.50703 * 109.46927 * 120.00485 * 2 1 3 24 24 C 1.38226 * 119.61503 * 274.99213 * 23 2 1 25 25 C 1.38628 * 119.16272 * 179.97438 * 24 23 2 26 26 C 1.38679 * 118.41843 * 0.02562 * 25 24 23 27 27 C 1.38176 * 119.16006 * 359.97438 * 26 25 24 28 28 N 1.31857 * 119.62213 * 94.72210 * 23 2 1 29 29 H 1.08997 * 109.46924 * 59.99866 * 1 2 3 30 30 H 1.08995 * 109.47242 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46547 * 300.00227 * 1 2 3 32 32 H 0.97006 * 120.00052 * 265.00639 * 4 2 1 33 33 H 1.09003 * 110.36449 * 274.74262 * 10 9 7 34 34 H 1.09005 * 110.36792 * 37.05930 * 10 9 7 35 35 H 1.09001 * 111.18898 * 279.19032 * 11 10 9 36 36 H 1.08993 * 110.94099 * 155.28877 * 11 10 9 37 37 H 0.96706 * 113.99176 * 185.02526 * 13 12 11 38 38 H 0.97007 * 119.99518 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.88472 * 300.44519 * 22 9 7 40 40 H 1.08999 * 109.88088 * 61.45416 * 22 9 7 41 41 H 1.08000 * 120.42225 * 359.95885 * 24 23 2 42 42 H 1.08003 * 120.79507 * 180.02562 * 25 24 23 43 43 H 1.07996 * 120.41510 * 180.02562 * 26 25 24 44 44 H 1.08005 * 119.61341 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8590 1.1592 -2.4115 7 6 2.6447 -0.7230 -3.5775 8 8 2.9324 -1.9007 -3.5233 9 7 2.7730 -0.0508 -4.7386 10 6 2.4541 1.3734 -4.9466 11 6 3.3178 1.7972 -6.1636 12 6 3.2522 0.5237 -7.0475 13 8 2.0511 0.5071 -7.8217 14 6 4.4617 0.4275 -7.9411 15 1 5.1331 -0.4138 -7.8525 16 6 4.7114 1.4136 -8.8719 17 7 5.7291 1.2968 -9.6967 18 14 3.6043 2.9154 -8.9613 19 1 4.0600 3.9260 -7.9734 20 1 3.6660 3.4954 -10.3270 21 1 2.2064 2.5188 -8.6548 22 6 3.2487 -0.6177 -6.0089 23 6 2.0323 -0.7105 1.2304 24 6 2.1614 -0.0133 2.4170 25 6 2.6238 -0.6763 3.5432 26 6 2.9411 -2.0218 3.4332 27 6 2.7863 -2.6526 2.2136 28 7 2.3385 -1.9913 1.1641 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 2.2489 -1.6319 -1.1526 33 1 1.3942 1.4962 -5.1696 34 1 2.7275 1.9559 -4.0667 35 1 4.3433 2.0119 -5.8632 36 1 2.8760 2.6517 -6.6760 37 1 1.9243 -0.3036 -8.3334 38 1 5.9049 1.9907 -10.3513 39 1 4.2583 -1.0094 -5.8851 40 1 2.5793 -1.4146 -6.3330 41 1 1.9054 1.0348 2.4661 42 1 2.7344 -0.1574 4.4839 43 1 3.3037 -2.5699 4.2902 44 1 3.0316 -3.7002 2.1196 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329328788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:58 Heat of formation + Delta-G solvation = -58.650594 kcal Electronic energy + Delta-G solvation = -28473.425766 eV Core-core repulsion = 24391.740230 eV Total energy + Delta-G solvation = -4081.685536 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.97726 -40.29692 -38.73631 -37.47918 -35.98964 -34.51875 -32.84276 -32.43009 -32.13787 -30.34730 -29.86106 -28.44766 -26.21674 -24.98831 -24.07969 -23.51321 -22.28781 -21.11428 -20.07922 -19.61418 -18.01176 -17.49857 -17.09114 -16.93405 -16.35365 -15.92921 -15.86292 -15.27889 -15.04419 -14.87225 -14.64404 -14.50549 -14.07847 -13.82159 -13.54155 -13.31254 -13.29663 -12.99705 -12.86963 -12.57359 -12.54672 -12.25054 -12.16971 -11.81603 -11.54609 -11.37001 -11.23855 -10.91010 -10.54407 -10.32444 -10.28764 -10.07396 -9.92702 -9.57039 -9.24683 -9.20566 -9.01435 -8.74780 -8.51708 -8.26679 -6.21862 -4.34228 0.63698 0.84566 1.63876 2.45746 3.31220 3.33962 3.42461 3.44148 3.61514 3.65486 3.76279 4.28494 4.42355 4.43828 4.54031 4.64366 4.71716 4.88065 4.91126 5.07260 5.07686 5.22315 5.26536 5.35513 5.38183 5.52944 5.64578 5.68954 5.73161 5.80625 5.87932 6.01249 6.07986 6.22768 6.28578 6.42693 6.49642 6.62295 6.68348 7.09790 7.20682 7.45297 7.53425 7.71351 7.88345 8.18500 8.24272 8.72572 8.88296 9.40949 10.88312 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.026860 B = 0.002473 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.198980 B =11318.988523 C =11618.416164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.194 3.806 3 H 0.108 0.892 4 N -0.693 5.693 5 C 0.513 3.487 6 O -0.518 6.518 7 C 0.512 3.488 8 O -0.533 6.533 9 N -0.575 5.575 10 C 0.099 3.901 11 C -0.130 4.130 12 C 0.216 3.784 13 O -0.572 6.572 14 C -0.552 4.552 15 H 0.079 0.921 16 C 0.089 3.911 17 N -0.886 5.886 18 Si 0.875 3.125 19 H -0.282 1.282 20 H -0.300 1.300 21 H -0.227 1.227 22 C 0.093 3.907 23 C 0.122 3.878 24 C -0.161 4.161 25 C -0.071 4.071 26 C -0.175 4.175 27 C 0.107 3.893 28 N -0.479 5.479 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.422 0.578 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.365 0.635 38 H 0.267 0.733 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.953 -2.906 25.998 27.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.089 3.911 3 H 0.126 0.874 4 N -0.348 5.348 5 C 0.294 3.706 6 O -0.393 6.393 7 C 0.294 3.706 8 O -0.411 6.411 9 N -0.308 5.308 10 C -0.023 4.023 11 C -0.168 4.168 12 C 0.175 3.825 13 O -0.378 6.378 14 C -0.589 4.589 15 H 0.097 0.903 16 C -0.116 4.116 17 N -0.522 5.522 18 Si 0.703 3.297 19 H -0.209 1.209 20 H -0.228 1.228 21 H -0.150 1.150 22 C -0.029 4.029 23 C -0.016 4.016 24 C -0.182 4.182 25 C -0.097 4.097 26 C -0.195 4.195 27 C -0.050 4.050 28 N -0.188 5.188 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.261 0.739 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.212 0.788 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.156 0.844 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.087 -2.509 25.377 27.071 hybrid contribution -0.009 0.215 0.559 0.599 sum -9.095 -2.294 25.936 27.580 Atomic orbital electron populations 1.22170 0.93154 1.03103 1.03297 1.19833 0.94834 0.96193 0.80254 0.87394 1.45711 1.65523 1.15742 1.07826 1.20276 0.78712 0.86930 0.84651 1.90706 1.48545 1.15325 1.84756 1.19560 0.80857 0.86620 0.83565 1.90741 1.50652 1.15191 1.84547 1.48427 1.60838 1.12648 1.08848 1.22750 0.99871 0.80078 0.99618 1.23200 1.00208 0.98725 0.94624 1.20007 0.85098 0.89549 0.87801 1.86520 1.44204 1.43488 1.63619 1.21161 1.08373 1.10392 1.18964 0.90282 1.24944 0.94412 0.98314 0.93939 1.69929 1.28499 1.34440 1.19337 0.87072 0.84466 0.81905 0.76263 1.20850 1.22764 1.15031 1.23005 0.99739 0.98035 0.82101 1.21248 0.95364 0.90479 0.94532 1.21861 1.01451 1.01681 0.93171 1.21597 0.94929 0.94491 0.98677 1.22193 1.01958 0.95771 0.99591 1.22790 0.93972 1.00217 0.87983 1.67288 1.10915 1.08285 1.32321 0.90761 0.91776 0.91172 0.73864 0.91092 0.89017 0.89294 0.90491 0.78758 0.92307 0.90164 0.91733 0.84351 0.84531 0.84587 0.82336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.47 37.16 0.35 -1.08 16 2 C 0.19 2.02 2.82 -69.08 -0.20 1.82 16 3 H 0.11 1.11 7.55 -51.93 -0.39 0.71 16 4 N -0.69 -9.12 5.04 -55.36 -0.28 -9.40 16 5 C 0.51 8.15 7.82 -11.59 -0.09 8.06 16 6 O -0.52 -8.63 13.44 5.50 0.07 -8.56 16 7 C 0.51 9.46 7.91 -11.59 -0.09 9.37 16 8 O -0.53 -10.72 16.81 5.49 0.09 -10.63 16 9 N -0.58 -11.12 3.32 -170.89 -0.57 -11.68 16 10 C 0.10 1.84 6.07 -2.41 -0.01 1.82 16 11 C -0.13 -2.72 4.83 -24.46 -0.12 -2.84 16 12 C 0.22 4.83 0.67 -89.94 -0.06 4.77 16 13 O -0.57 -12.40 10.45 -35.23 -0.37 -12.77 16 14 C -0.55 -14.65 8.82 -34.44 -0.30 -14.95 16 15 H 0.08 2.28 7.82 -52.49 -0.41 1.87 16 16 C 0.09 2.47 5.47 -17.82 -0.10 2.38 16 17 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 18 Si 0.88 21.18 23.89 -169.99 -4.06 17.12 16 19 H -0.28 -6.65 7.08 56.52 0.40 -6.24 16 20 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 21 H -0.23 -5.37 5.50 56.52 0.31 -5.06 16 22 C 0.09 1.92 6.21 -3.07 -0.02 1.90 16 23 C 0.12 1.16 5.89 -82.58 -0.49 0.68 16 24 C -0.16 -1.16 9.77 -39.44 -0.39 -1.55 16 25 C -0.07 -0.42 10.18 -39.27 -0.40 -0.82 16 26 C -0.18 -1.06 10.11 -39.44 -0.40 -1.46 16 27 C 0.11 0.84 11.18 -17.55 -0.20 0.65 16 28 N -0.48 -4.94 9.05 -9.47 -0.09 -5.03 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 32 H 0.42 5.73 7.10 -40.82 -0.29 5.44 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.09 1.62 6.14 -51.93 -0.32 1.30 16 35 H 0.09 1.88 8.04 -51.93 -0.42 1.47 16 36 H 0.08 1.63 5.00 -51.93 -0.26 1.37 16 37 H 0.37 6.84 9.08 45.56 0.41 7.26 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.08 1.74 7.66 -51.93 -0.40 1.34 16 40 H 0.06 1.27 8.06 -51.93 -0.42 0.85 16 41 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 43 H 0.14 0.47 8.06 -52.49 -0.42 0.04 16 44 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 LS Contribution 362.41 15.07 5.46 5.46 Total: -1.00 -32.91 362.41 -6.57 -39.47 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -5.10 Total: 12.67 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: -2.50 Total: 8.75 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.16 Total: -51.51 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -0.20 Total: -31.96 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.06 Total: 17.12 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.91 -6.57 -39.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329328788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.176 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds