Wall clock time and date at job start Tue Mar 31 2020 17:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47745 * 2 1 4 4 N 1.46500 * 109.47056 * 239.99836 * 2 1 3 5 5 C 1.34775 * 120.00059 * 85.00363 * 4 2 1 6 6 O 1.21347 * 119.99990 * 0.02562 * 5 4 2 7 7 C 1.49451 * 120.00236 * 180.02562 * 5 4 2 8 8 O 1.21354 * 120.00095 * 0.02562 * 7 5 4 9 9 N 1.34776 * 120.00098 * 179.97438 * 7 5 4 10 10 C 1.47421 * 125.64955 * 359.70003 * 9 7 5 11 11 C 1.55126 * 104.72691 * 155.81486 * 10 9 7 12 12 C 1.55157 * 101.48640 * 37.28937 * 11 10 9 13 13 O 1.42904 * 110.71334 * 82.69892 * 12 11 10 14 14 C 1.50692 * 110.87289 * 205.90344 * 12 11 10 15 15 H 1.07997 * 120.00581 * 118.67320 * 14 12 11 16 16 C 1.37881 * 120.00073 * 298.66947 * 14 12 11 17 17 N 1.31515 * 120.00083 * 183.38785 * 16 14 12 18 18 Si 1.86796 * 119.99739 * 3.39290 * 16 14 12 19 19 H 1.48495 * 109.47583 * 84.83284 * 18 16 14 20 20 H 1.48506 * 109.47300 * 204.83250 * 18 16 14 21 21 H 1.48499 * 109.47291 * 324.83077 * 18 16 14 22 22 C 1.47019 * 125.64978 * 179.97438 * 9 7 5 23 23 C 1.50703 * 109.46927 * 120.00485 * 2 1 3 24 24 C 1.38226 * 119.61503 * 274.99213 * 23 2 1 25 25 C 1.38628 * 119.16272 * 179.97438 * 24 23 2 26 26 C 1.38679 * 118.41843 * 0.02562 * 25 24 23 27 27 C 1.38176 * 119.16006 * 359.97438 * 26 25 24 28 28 N 1.31857 * 119.62213 * 94.72210 * 23 2 1 29 29 H 1.08997 * 109.46924 * 59.99866 * 1 2 3 30 30 H 1.08995 * 109.47242 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46547 * 300.00227 * 1 2 3 32 32 H 0.97006 * 120.00052 * 265.00639 * 4 2 1 33 33 H 1.09003 * 110.36449 * 274.74262 * 10 9 7 34 34 H 1.09005 * 110.36792 * 37.05930 * 10 9 7 35 35 H 1.09001 * 111.18898 * 279.19032 * 11 10 9 36 36 H 1.08993 * 110.94099 * 155.28877 * 11 10 9 37 37 H 0.96706 * 113.99176 * 185.02526 * 13 12 11 38 38 H 0.97007 * 119.99518 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.88472 * 300.44519 * 22 9 7 40 40 H 1.08999 * 109.88088 * 61.45416 * 22 9 7 41 41 H 1.08000 * 120.42225 * 359.95885 * 24 23 2 42 42 H 1.08003 * 120.79507 * 180.02562 * 25 24 23 43 43 H 1.07996 * 120.41510 * 180.02562 * 26 25 24 44 44 H 1.08005 * 119.61341 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8590 1.1592 -2.4115 7 6 2.6447 -0.7230 -3.5775 8 8 2.9324 -1.9007 -3.5233 9 7 2.7730 -0.0508 -4.7386 10 6 2.4541 1.3734 -4.9466 11 6 3.3178 1.7972 -6.1636 12 6 3.2522 0.5237 -7.0475 13 8 2.0511 0.5071 -7.8217 14 6 4.4617 0.4275 -7.9411 15 1 5.1331 -0.4138 -7.8525 16 6 4.7114 1.4136 -8.8719 17 7 5.7291 1.2968 -9.6967 18 14 3.6043 2.9154 -8.9613 19 1 4.0600 3.9260 -7.9734 20 1 3.6660 3.4954 -10.3270 21 1 2.2064 2.5188 -8.6548 22 6 3.2487 -0.6177 -6.0089 23 6 2.0323 -0.7105 1.2304 24 6 2.1614 -0.0133 2.4170 25 6 2.6238 -0.6763 3.5432 26 6 2.9411 -2.0218 3.4332 27 6 2.7863 -2.6526 2.2136 28 7 2.3385 -1.9913 1.1641 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 2.2489 -1.6319 -1.1526 33 1 1.3942 1.4962 -5.1696 34 1 2.7275 1.9559 -4.0667 35 1 4.3433 2.0119 -5.8632 36 1 2.8760 2.6517 -6.6760 37 1 1.9243 -0.3036 -8.3334 38 1 5.9049 1.9907 -10.3513 39 1 4.2583 -1.0094 -5.8851 40 1 2.5793 -1.4146 -6.3330 41 1 1.9054 1.0348 2.4661 42 1 2.7344 -0.1574 4.4839 43 1 3.3037 -2.5699 4.2902 44 1 3.0316 -3.7002 2.1196 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329328788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:57 Heat of formation + Delta-G solvation = -84.962055 kcal Electronic energy + Delta-G solvation = -28474.566717 eV Core-core repulsion = 24391.740230 eV Total energy + Delta-G solvation = -4082.826487 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.03501 -41.24072 -40.11952 -39.05472 -37.02373 -36.09833 -34.51677 -33.36603 -32.99172 -32.04301 -30.55564 -30.12202 -27.90060 -26.04905 -24.94614 -24.45325 -23.66232 -22.06994 -21.56327 -21.09857 -19.58010 -19.05891 -18.17906 -17.72282 -17.44362 -17.26489 -16.92883 -16.64062 -16.39468 -16.29421 -15.90725 -15.43502 -15.22225 -15.05227 -14.80406 -14.72725 -14.47053 -14.17103 -14.06477 -14.01085 -13.73772 -13.47030 -13.20916 -13.18272 -12.94693 -12.82877 -12.50557 -12.38924 -12.22813 -12.17421 -11.82901 -10.97545 -10.84238 -10.81676 -10.64523 -10.59777 -10.38042 -10.34556 -9.92818 -9.83077 -8.36598 -6.52339 0.10144 0.28077 0.35436 1.17367 1.39262 1.46931 1.69020 2.05761 2.38823 2.40177 2.81607 2.99142 3.05796 3.25671 3.53449 3.72723 3.73870 3.96406 4.04935 4.11576 4.16742 4.22353 4.24966 4.27915 4.35153 4.49635 4.61057 4.70865 4.75730 4.77736 4.84260 4.87438 4.95316 5.03568 5.11003 5.15511 5.26557 5.29128 5.36663 5.48541 5.76199 5.97608 6.05803 6.25280 6.56316 6.59026 6.84348 7.00768 7.11974 7.29141 8.77239 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.026860 B = 0.002473 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.198980 B =11318.988523 C =11618.416164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.192 3.808 3 H 0.111 0.889 4 N -0.681 5.681 5 C 0.519 3.481 6 O -0.526 6.526 7 C 0.509 3.491 8 O -0.554 6.554 9 N -0.581 5.581 10 C 0.111 3.889 11 C -0.132 4.132 12 C 0.218 3.782 13 O -0.572 6.572 14 C -0.551 4.551 15 H 0.041 0.959 16 C 0.039 3.961 17 N -0.934 5.934 18 Si 0.935 3.065 19 H -0.269 1.269 20 H -0.307 1.307 21 H -0.213 1.213 22 C 0.100 3.900 23 C 0.099 3.901 24 C -0.162 4.162 25 C -0.072 4.072 26 C -0.169 4.169 27 C 0.087 3.913 28 N -0.512 5.512 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.420 0.580 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.378 0.622 38 H 0.269 0.731 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.159 0.841 42 H 0.168 0.832 43 H 0.164 0.836 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.658 -1.761 29.051 30.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.087 3.913 3 H 0.129 0.871 4 N -0.334 5.334 5 C 0.299 3.701 6 O -0.403 6.403 7 C 0.292 3.708 8 O -0.433 6.433 9 N -0.313 5.313 10 C -0.010 4.010 11 C -0.170 4.170 12 C 0.177 3.823 13 O -0.379 6.379 14 C -0.588 4.588 15 H 0.059 0.941 16 C -0.162 4.162 17 N -0.572 5.572 18 Si 0.760 3.240 19 H -0.194 1.194 20 H -0.235 1.235 21 H -0.136 1.136 22 C -0.023 4.023 23 C -0.039 4.039 24 C -0.182 4.182 25 C -0.098 4.098 26 C -0.188 4.188 27 C -0.070 4.070 28 N -0.222 5.222 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.114 0.886 32 H 0.259 0.741 33 H 0.100 0.900 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.227 0.773 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.177 0.823 42 H 0.185 0.815 43 H 0.182 0.818 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -10.812 -1.381 28.477 30.491 hybrid contribution 0.583 -0.306 -0.291 0.720 sum -10.229 -1.687 28.186 30.032 Atomic orbital electron populations 1.22114 0.92130 1.02853 1.03903 1.20062 0.95632 0.96117 0.79459 0.87135 1.45769 1.64178 1.15603 1.07884 1.19723 0.79181 0.86698 0.84477 1.90694 1.49460 1.15337 1.84775 1.20117 0.80111 0.86484 0.84072 1.90726 1.51384 1.16235 1.84950 1.48440 1.61154 1.13024 1.08669 1.22701 0.99840 0.79518 0.98943 1.23164 1.00528 0.97937 0.95370 1.19803 0.83635 0.91274 0.87556 1.86462 1.43081 1.44585 1.63817 1.21372 1.09187 1.08846 1.19425 0.94109 1.25741 0.95644 1.01222 0.93608 1.70055 1.30752 1.35742 1.20689 0.86147 0.83228 0.78607 0.76028 1.19440 1.23518 1.13573 1.22725 0.99107 0.97678 0.82770 1.21182 0.97152 0.90679 0.94885 1.22119 1.00808 1.02655 0.92643 1.22021 0.93733 0.94545 0.99454 1.22536 1.00516 0.96114 0.99647 1.23152 0.94360 1.01047 0.88401 1.67192 1.12155 1.09015 1.33886 0.92021 0.92419 0.88601 0.74133 0.90047 0.87679 0.89984 0.90092 0.77295 0.92243 0.92061 0.90868 0.82308 0.81486 0.81816 0.81067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.47 71.98 0.68 -1.82 16 2 C 0.19 3.72 2.82 44.25 0.12 3.84 16 3 H 0.11 2.08 7.55 -2.39 -0.02 2.06 16 4 N -0.68 -17.43 5.04 -447.44 -2.26 -19.69 16 5 C 0.52 15.97 7.82 87.27 0.68 16.65 16 6 O -0.53 -16.64 13.44 -3.24 -0.04 -16.69 16 7 C 0.51 18.55 7.91 87.27 0.69 19.24 16 8 O -0.55 -22.32 16.81 -3.26 -0.05 -22.37 16 9 N -0.58 -21.96 3.32 -812.94 -2.70 -24.66 16 10 C 0.11 3.93 6.07 86.93 0.53 4.46 16 11 C -0.13 -5.35 4.83 32.06 0.15 -5.19 16 12 C 0.22 9.66 0.67 -10.35 -0.01 9.65 16 13 O -0.57 -23.81 10.45 -148.98 -1.56 -25.37 16 14 C -0.55 -29.87 8.82 25.60 0.23 -29.65 16 15 H 0.04 2.47 7.82 -2.91 -0.02 2.44 16 16 C 0.04 2.16 5.47 84.66 0.46 2.62 16 17 N -0.93 -56.62 13.96 21.45 0.30 -56.32 16 18 Si 0.93 43.38 23.89 68.60 1.64 45.02 16 19 H -0.27 -11.83 7.08 99.48 0.70 -11.13 16 20 H -0.31 -14.54 7.11 99.48 0.71 -13.83 16 21 H -0.21 -9.37 5.50 99.48 0.55 -8.82 16 22 C 0.10 4.12 6.21 86.73 0.54 4.66 16 23 C 0.10 1.74 5.89 42.55 0.25 1.99 16 24 C -0.16 -1.92 9.77 22.36 0.22 -1.70 16 25 C -0.07 -0.62 10.18 22.47 0.23 -0.39 16 26 C -0.17 -1.57 10.11 22.36 0.23 -1.34 16 27 C 0.09 1.25 11.18 84.67 0.95 2.19 16 28 N -0.51 -10.17 9.05 -183.89 -1.66 -11.83 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.42 11.34 7.10 -92.70 -0.66 10.68 16 33 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.11 3.47 6.14 -2.38 -0.01 3.46 16 35 H 0.08 3.41 8.04 -2.39 -0.02 3.39 16 36 H 0.08 3.22 5.00 -2.39 -0.01 3.21 16 37 H 0.38 13.65 9.08 -74.05 -0.67 12.97 16 38 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 39 H 0.06 2.74 7.66 -2.39 -0.02 2.73 16 40 H 0.07 2.87 8.06 -2.39 -0.02 2.85 16 41 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 42 H 0.17 0.37 8.06 -2.91 -0.02 0.35 16 43 H 0.16 0.53 8.06 -2.91 -0.02 0.51 16 44 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -71.74 362.41 -0.82 -72.57 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: -0.44 Total: 34.14 kcal Atomic # 6 Polarization: 19.26 SS G_CDS: 5.95 Total: 25.21 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -6.32 Total: -112.51 kcal Atomic # 8 Polarization: -62.77 SS G_CDS: -1.65 Total: -64.43 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.64 Total: 45.02 kcal Total: -71.74 -0.82 -72.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329328788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.395 kcal (2) G-P(sol) polarization free energy of solvation -71.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds