Wall clock time and date at job start Tue Mar 31 2020 18:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47177 * 2 1 4 4 C 1.50697 * 109.47382 * 120.00107 * 2 1 3 5 5 H 1.08007 * 120.00024 * 119.99817 * 4 2 1 6 6 C 1.37868 * 120.00375 * 300.00640 * 4 2 1 7 7 N 1.31514 * 120.00716 * 179.97438 * 6 4 2 8 8 Si 1.86810 * 119.99670 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.47014 * 90.00405 * 8 6 4 10 10 H 1.48505 * 109.47044 * 210.00416 * 8 6 4 11 11 H 1.48496 * 109.46850 * 330.00332 * 8 6 4 12 12 N 1.46898 * 109.47260 * 240.00509 * 2 1 3 13 13 C 1.46897 * 111.00321 * 84.99403 * 12 2 1 14 14 C 1.52998 * 109.47522 * 179.97438 * 13 12 2 15 15 H 1.09001 * 109.46546 * 60.00539 * 14 13 12 16 16 O 1.42899 * 109.47586 * 300.00982 * 14 13 12 17 17 C 1.52999 * 109.47323 * 180.02562 * 14 13 12 18 18 N 1.46505 * 109.47155 * 178.52281 * 17 14 13 19 19 C 1.35481 * 127.82427 * 264.32077 * 18 17 14 20 20 O 1.21609 * 126.87310 * 0.02562 * 19 18 17 21 21 O 1.34234 * 106.25277 * 180.25417 * 19 18 17 22 22 N 1.21012 * 110.89002 * 359.73271 * 21 19 18 23 23 C 1.29911 * 111.55172 * 359.97438 * 22 21 19 24 24 C 1.48081 * 126.52621 * 180.02562 * 23 22 21 25 25 C 1.39462 * 120.13403 * 171.96294 * 24 23 22 26 26 C 1.37985 * 119.86698 * 180.25544 * 25 24 23 27 27 C 1.38345 * 120.13457 * 0.02562 * 26 25 24 28 28 C 1.38334 * 120.26402 * 0.02562 * 27 26 25 29 29 C 1.37990 * 120.13965 * 359.96766 * 28 27 26 30 30 H 1.09002 * 109.47400 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47070 * 299.99838 * 1 2 3 32 32 H 1.09000 * 109.47362 * 59.99668 * 1 2 3 33 33 H 0.97001 * 120.00513 * 179.97438 * 7 6 4 34 34 H 1.00902 * 111.00145 * 321.04270 * 12 2 1 35 35 H 1.09001 * 109.46770 * 60.00461 * 13 12 2 36 36 H 1.08994 * 109.47677 * 300.00559 * 13 12 2 37 37 H 0.96701 * 113.99498 * 299.99921 * 16 14 13 38 38 H 1.08997 * 109.46695 * 58.52716 * 17 14 13 39 39 H 1.08997 * 109.47157 * 298.52401 * 17 14 13 40 40 H 1.08002 * 120.06322 * 0.29724 * 25 24 23 41 41 H 1.07994 * 119.93632 * 180.02562 * 26 25 24 42 42 H 1.07995 * 119.86685 * 179.97438 * 27 26 25 43 43 H 1.08000 * 119.93147 * 179.97438 * 28 27 26 44 44 H 1.07995 * 120.07282 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2396 2.4826 7 7 2.1372 -0.8598 3.5565 8 14 0.6257 1.2796 2.6541 9 1 -0.8021 0.8741 2.6993 10 1 0.9770 1.9951 3.9071 11 1 0.8489 2.1771 1.4923 12 7 2.0197 -0.6924 -1.1995 13 6 2.0823 0.2227 -2.3469 14 6 2.5962 -0.5326 -3.5742 15 1 1.9201 -1.3564 -3.8031 16 8 3.9012 -1.0484 -3.3044 17 6 2.6620 0.4207 -4.7691 18 7 3.1873 -0.2937 -5.9354 19 6 4.4670 -0.3330 -6.3786 20 8 5.4281 0.2241 -5.8838 21 8 4.4608 -1.1058 -7.4762 22 7 3.3459 -1.5140 -7.7102 23 6 2.4874 -1.0865 -6.8339 24 6 1.0370 -1.3831 -6.8036 25 6 0.2653 -0.9929 -5.7094 26 6 -1.0848 -1.2768 -5.6845 27 6 -1.6731 -1.9476 -6.7418 28 6 -0.9126 -2.3382 -7.8294 29 6 0.4384 -2.0599 -7.8659 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.9032 -0.5282 4.4375 34 1 1.4496 -1.4978 -1.4101 35 1 2.7587 1.0463 -2.1182 36 1 1.0870 0.6164 -2.5525 37 1 4.5563 -0.3695 -3.0923 38 1 3.3178 1.2579 -4.5302 39 1 1.6625 0.7940 -4.9916 40 1 0.7234 -0.4689 -4.8836 41 1 -1.6835 -0.9747 -4.8380 42 1 -2.7300 -2.1680 -6.7176 43 1 -1.3773 -2.8620 -8.6516 44 1 1.0310 -2.3650 -8.7157 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364740689.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:52 Heat of formation + Delta-G solvation = 20.874074 kcal Electronic energy + Delta-G solvation = -28881.575119 eV Core-core repulsion = 24803.338031 eV Total energy + Delta-G solvation = -4078.237088 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.49181 -39.92742 -39.02741 -38.02250 -36.64947 -35.62975 -33.07356 -32.56324 -31.72405 -31.07593 -30.50805 -29.15840 -26.11181 -25.16341 -24.79464 -23.47105 -22.86195 -21.84023 -21.71811 -20.32344 -18.62393 -18.52192 -17.79594 -17.07780 -16.80711 -16.61393 -16.23416 -15.62584 -15.49227 -15.32154 -15.14164 -14.47301 -14.35446 -14.12808 -13.93914 -13.86019 -13.60427 -13.36584 -13.06576 -12.85076 -12.55004 -12.47821 -12.28674 -12.03465 -11.85491 -11.59907 -11.57426 -11.13630 -11.07596 -10.78303 -10.71352 -10.23025 -10.19047 -9.70222 -9.51847 -9.47382 -9.21966 -8.85392 -8.62482 -7.55422 -6.08893 -4.07039 0.19933 0.86470 1.42154 1.71708 1.96936 2.98742 3.19044 3.27460 3.28623 3.32926 3.57435 3.93776 4.07930 4.20810 4.34287 4.34737 4.46113 4.52679 4.59677 4.80359 4.88594 4.96134 5.03409 5.05572 5.17907 5.21413 5.26806 5.35976 5.49760 5.62720 5.68614 5.85789 5.90906 5.92241 5.98367 6.05535 6.17046 6.36104 6.38014 6.59790 6.99058 7.18338 7.60217 7.68573 7.79200 7.86519 8.16799 8.62678 9.03884 9.52630 11.04673 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013210 B = 0.003227 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.071284 B = 8674.681244 C =10279.792820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.184 3.816 3 H 0.033 0.967 4 C -0.500 4.500 5 H 0.083 0.917 6 C 0.067 3.933 7 N -0.899 5.899 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.296 1.296 11 H -0.271 1.271 12 N -0.658 5.658 13 C 0.028 3.972 14 C 0.088 3.912 15 H 0.103 0.897 16 O -0.535 6.535 17 C 0.090 3.910 18 N -0.540 5.540 19 C 0.568 3.432 20 O -0.474 6.474 21 O -0.003 6.003 22 N -0.331 5.331 23 C 0.277 3.723 24 C -0.032 4.032 25 C -0.108 4.108 26 C -0.113 4.113 27 C -0.096 4.096 28 C -0.118 4.118 29 C -0.073 4.073 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.025 0.975 33 H 0.264 0.736 34 H 0.333 0.667 35 H 0.076 0.924 36 H 0.030 0.970 37 H 0.379 0.621 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.589 1.616 -24.774 26.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.075 3.925 3 H 0.051 0.949 4 C -0.538 4.538 5 H 0.101 0.899 6 C -0.134 4.134 7 N -0.538 5.538 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.196 1.196 12 N -0.288 5.288 13 C -0.103 4.103 14 C 0.026 3.974 15 H 0.121 0.879 16 O -0.340 6.340 17 C -0.031 4.031 18 N -0.277 5.277 19 C 0.320 3.680 20 O -0.353 6.353 21 O -0.046 6.046 22 N -0.066 5.066 23 C 0.010 3.990 24 C -0.034 4.034 25 C -0.127 4.127 26 C -0.131 4.131 27 C -0.115 4.115 28 C -0.136 4.136 29 C -0.093 4.093 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.150 0.850 35 H 0.094 0.906 36 H 0.048 0.952 37 H 0.227 0.773 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.148 0.852 43 H 0.151 0.849 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.394 0.884 -25.132 26.212 hybrid contribution -1.443 1.949 0.881 2.580 sum -8.837 2.832 -24.250 25.965 Atomic orbital electron populations 1.22877 1.01512 1.00966 0.98876 1.19664 0.88503 0.95057 0.89285 0.94885 1.20965 1.31311 1.13890 0.87635 0.89927 1.24950 0.96001 0.96577 0.95887 1.69879 1.45750 1.40260 0.97866 0.86898 0.80552 0.83928 0.76917 1.20794 1.22367 1.19612 1.60488 1.58236 1.08144 1.01929 1.22580 0.99352 0.96685 0.91728 1.22501 0.87488 0.96194 0.91182 0.87889 1.86634 1.18249 1.37451 1.91621 1.22882 1.01831 0.95695 0.82659 1.46617 1.09043 1.45261 1.26795 1.20463 0.84002 0.81961 0.81614 1.91170 1.35856 1.48043 1.60184 1.85570 1.23540 1.55165 1.40284 1.74180 0.89851 1.20916 1.21613 1.22688 0.94882 0.93397 0.88083 1.17365 0.85250 1.03426 0.97364 1.21699 0.94597 0.99190 0.97247 1.21173 0.94260 0.98538 0.99125 1.21447 1.00493 0.96239 0.93283 1.21164 0.93356 1.00151 0.98923 1.21200 0.95155 0.95632 0.97270 0.92618 0.93525 0.95634 0.92626 0.84977 0.90559 0.95173 0.77294 0.86969 0.87118 0.84480 0.84726 0.85163 0.84892 0.84505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.60 8.64 37.16 0.32 -3.28 16 2 C 0.18 4.02 2.16 -68.87 -0.15 3.87 16 3 H 0.03 0.75 6.86 -51.93 -0.36 0.40 16 4 C -0.50 -13.70 9.42 -34.45 -0.32 -14.02 16 5 H 0.08 2.54 8.06 -52.48 -0.42 2.11 16 6 C 0.07 1.90 5.45 -17.82 -0.10 1.80 16 7 N -0.90 -27.23 13.96 55.43 0.77 -26.45 16 8 Si 0.89 21.19 24.37 -169.99 -4.14 17.04 16 9 H -0.28 -6.52 6.87 56.52 0.39 -6.13 16 10 H -0.30 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.27 -6.12 6.53 56.52 0.37 -5.75 16 12 N -0.66 -12.05 6.10 -107.96 -0.66 -12.71 16 13 C 0.03 0.37 5.15 -3.83 -0.02 0.35 16 14 C 0.09 1.01 2.78 -26.73 -0.07 0.94 16 15 H 0.10 1.19 6.58 -51.93 -0.34 0.85 16 16 O -0.53 -7.89 12.99 -35.23 -0.46 -8.34 16 17 C 0.09 0.82 4.99 -4.04 -0.02 0.80 16 18 N -0.54 -6.09 2.70 -119.33 -0.32 -6.41 16 19 C 0.57 7.84 9.29 54.34 0.50 8.35 16 20 O -0.47 -7.63 17.99 -18.90 -0.34 -7.97 16 21 O 0.00 -0.04 11.25 -7.53 -0.08 -0.12 16 22 N -0.33 -4.05 11.74 32.10 0.38 -3.67 16 23 C 0.28 3.03 7.79 -153.62 -1.20 1.83 16 24 C -0.03 -0.29 5.87 -104.95 -0.62 -0.90 16 25 C -0.11 -0.85 8.48 -39.22 -0.33 -1.18 16 26 C -0.11 -0.75 10.03 -39.63 -0.40 -1.15 16 27 C -0.10 -0.55 10.04 -39.51 -0.40 -0.95 16 28 C -0.12 -0.70 10.03 -39.64 -0.40 -1.10 16 29 C -0.07 -0.55 9.70 -39.22 -0.38 -0.93 16 30 H 0.05 1.06 8.13 -51.93 -0.42 0.64 16 31 H 0.05 0.99 3.27 -51.93 -0.17 0.82 16 32 H 0.02 0.41 7.45 -51.93 -0.39 0.02 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.33 5.82 8.47 -39.29 -0.33 5.48 16 35 H 0.08 1.03 8.06 -51.93 -0.42 0.61 16 36 H 0.03 0.35 7.44 -51.93 -0.39 -0.04 16 37 H 0.38 4.98 9.04 45.56 0.41 5.39 16 38 H 0.11 0.96 8.13 -51.93 -0.42 0.54 16 39 H 0.11 0.72 5.94 -51.93 -0.31 0.41 16 40 H 0.14 1.01 2.96 -52.49 -0.16 0.86 16 41 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 42 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 43 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 44 H 0.14 0.94 7.89 -52.49 -0.41 0.53 16 LS Contribution 362.20 15.07 5.46 5.46 Total: -1.00 -33.72 362.20 -7.55 -41.27 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -4.57 Total: 7.50 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -3.58 Total: -5.57 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.17 Total: -49.25 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.88 Total: -16.44 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.14 Total: 17.04 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.72 -7.55 -41.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364740689.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.144 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds