Wall clock time and date at job start Tue Mar 31 2020 18:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47177 * 2 1 4 4 C 1.50697 * 109.47382 * 120.00107 * 2 1 3 5 5 H 1.08007 * 120.00024 * 119.99817 * 4 2 1 6 6 C 1.37868 * 120.00375 * 300.00640 * 4 2 1 7 7 N 1.31514 * 120.00716 * 179.97438 * 6 4 2 8 8 Si 1.86810 * 119.99670 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.47014 * 90.00405 * 8 6 4 10 10 H 1.48505 * 109.47044 * 210.00416 * 8 6 4 11 11 H 1.48496 * 109.46850 * 330.00332 * 8 6 4 12 12 N 1.46898 * 109.47260 * 240.00509 * 2 1 3 13 13 C 1.46897 * 111.00321 * 84.99403 * 12 2 1 14 14 C 1.52998 * 109.47522 * 179.97438 * 13 12 2 15 15 H 1.09001 * 109.46546 * 60.00539 * 14 13 12 16 16 O 1.42899 * 109.47586 * 300.00982 * 14 13 12 17 17 C 1.52999 * 109.47323 * 180.02562 * 14 13 12 18 18 N 1.46505 * 109.47155 * 178.52281 * 17 14 13 19 19 C 1.35481 * 127.82427 * 264.32077 * 18 17 14 20 20 O 1.21609 * 126.87310 * 0.02562 * 19 18 17 21 21 O 1.34234 * 106.25277 * 180.25417 * 19 18 17 22 22 N 1.21012 * 110.89002 * 359.73271 * 21 19 18 23 23 C 1.29911 * 111.55172 * 359.97438 * 22 21 19 24 24 C 1.48081 * 126.52621 * 180.02562 * 23 22 21 25 25 C 1.39462 * 120.13403 * 171.96294 * 24 23 22 26 26 C 1.37985 * 119.86698 * 180.25544 * 25 24 23 27 27 C 1.38345 * 120.13457 * 0.02562 * 26 25 24 28 28 C 1.38334 * 120.26402 * 0.02562 * 27 26 25 29 29 C 1.37990 * 120.13965 * 359.96766 * 28 27 26 30 30 H 1.09002 * 109.47400 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47070 * 299.99838 * 1 2 3 32 32 H 1.09000 * 109.47362 * 59.99668 * 1 2 3 33 33 H 0.97001 * 120.00513 * 179.97438 * 7 6 4 34 34 H 1.00902 * 111.00145 * 321.04270 * 12 2 1 35 35 H 1.09001 * 109.46770 * 60.00461 * 13 12 2 36 36 H 1.08994 * 109.47677 * 300.00559 * 13 12 2 37 37 H 0.96701 * 113.99498 * 299.99921 * 16 14 13 38 38 H 1.08997 * 109.46695 * 58.52716 * 17 14 13 39 39 H 1.08997 * 109.47157 * 298.52401 * 17 14 13 40 40 H 1.08002 * 120.06322 * 0.29724 * 25 24 23 41 41 H 1.07994 * 119.93632 * 180.02562 * 26 25 24 42 42 H 1.07995 * 119.86685 * 179.97438 * 27 26 25 43 43 H 1.08000 * 119.93147 * 179.97438 * 28 27 26 44 44 H 1.07995 * 120.07282 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2396 2.4826 7 7 2.1372 -0.8598 3.5565 8 14 0.6257 1.2796 2.6541 9 1 -0.8021 0.8741 2.6993 10 1 0.9770 1.9951 3.9071 11 1 0.8489 2.1771 1.4923 12 7 2.0197 -0.6924 -1.1995 13 6 2.0823 0.2227 -2.3469 14 6 2.5962 -0.5326 -3.5742 15 1 1.9201 -1.3564 -3.8031 16 8 3.9012 -1.0484 -3.3044 17 6 2.6620 0.4207 -4.7691 18 7 3.1873 -0.2937 -5.9354 19 6 4.4670 -0.3330 -6.3786 20 8 5.4281 0.2241 -5.8838 21 8 4.4608 -1.1058 -7.4762 22 7 3.3459 -1.5140 -7.7102 23 6 2.4874 -1.0865 -6.8339 24 6 1.0370 -1.3831 -6.8036 25 6 0.2653 -0.9929 -5.7094 26 6 -1.0848 -1.2768 -5.6845 27 6 -1.6731 -1.9476 -6.7418 28 6 -0.9126 -2.3382 -7.8294 29 6 0.4384 -2.0599 -7.8659 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.9032 -0.5282 4.4375 34 1 1.4496 -1.4978 -1.4101 35 1 2.7587 1.0463 -2.1182 36 1 1.0870 0.6164 -2.5525 37 1 4.5563 -0.3695 -3.0923 38 1 3.3178 1.2579 -4.5302 39 1 1.6625 0.7940 -4.9916 40 1 0.7234 -0.4689 -4.8836 41 1 -1.6835 -0.9747 -4.8380 42 1 -2.7300 -2.1680 -6.7176 43 1 -1.3773 -2.8620 -8.6516 44 1 1.0310 -2.3650 -8.7157 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364740689.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:51 Heat of formation + Delta-G solvation = -4.352195 kcal Electronic energy + Delta-G solvation = -28882.669012 eV Core-core repulsion = 24803.338031 eV Total energy + Delta-G solvation = -4079.330981 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.42160 -40.61375 -39.91106 -39.11383 -37.79040 -36.93130 -34.46453 -33.85752 -32.59971 -31.90329 -31.38391 -30.38319 -27.27031 -26.96768 -25.62133 -24.32035 -23.56797 -22.71771 -22.50696 -22.03301 -19.59494 -19.40035 -18.88230 -18.42819 -17.79800 -17.56259 -17.31741 -16.97061 -16.50268 -16.25034 -15.78805 -15.70546 -15.69442 -15.12264 -14.87508 -14.74173 -14.61312 -14.29308 -14.21763 -14.11573 -14.00331 -13.52189 -13.33216 -13.25874 -12.98716 -12.70054 -12.48828 -12.35891 -12.18890 -12.02587 -11.96086 -11.67615 -11.47038 -11.34548 -11.07762 -10.73440 -10.41355 -9.97547 -9.61536 -8.95189 -8.24363 -6.27635 -0.45055 0.38413 0.51447 0.87930 1.04343 1.31616 1.37814 1.48353 2.09769 2.34562 2.72913 2.80381 3.04091 3.10152 3.22177 3.36950 3.59736 3.81093 3.85700 3.92911 4.00094 4.05926 4.18067 4.33529 4.39396 4.45549 4.50885 4.56678 4.61976 4.64763 4.69898 4.77487 4.89292 4.94110 5.03680 5.04833 5.33428 5.43593 5.44823 5.52611 5.69714 5.90859 6.02994 6.16648 6.64147 6.71274 6.79359 6.82619 6.91556 7.37765 8.93607 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013210 B = 0.003227 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.071284 B = 8674.681244 C =10279.792820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.189 3.811 3 H 0.032 0.968 4 C -0.506 4.506 5 H 0.028 0.972 6 C 0.003 3.997 7 N -0.956 5.956 8 Si 0.958 3.042 9 H -0.265 1.265 10 H -0.305 1.305 11 H -0.243 1.243 12 N -0.680 5.680 13 C 0.030 3.970 14 C 0.094 3.906 15 H 0.106 0.894 16 O -0.563 6.563 17 C 0.091 3.909 18 N -0.533 5.533 19 C 0.561 3.439 20 O -0.506 6.506 21 O -0.017 6.017 22 N -0.352 5.352 23 C 0.291 3.709 24 C -0.056 4.056 25 C -0.112 4.112 26 C -0.118 4.118 27 C -0.090 4.090 28 C -0.118 4.118 29 C -0.080 4.080 30 H 0.054 0.946 31 H 0.033 0.967 32 H 0.071 0.929 33 H 0.264 0.736 34 H 0.336 0.664 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.382 0.618 38 H 0.120 0.880 39 H 0.147 0.853 40 H 0.141 0.859 41 H 0.154 0.846 42 H 0.156 0.844 43 H 0.157 0.843 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.313 3.272 -26.612 29.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.080 3.920 3 H 0.050 0.950 4 C -0.544 4.544 5 H 0.046 0.954 6 C -0.193 4.193 7 N -0.597 5.597 8 Si 0.785 3.215 9 H -0.191 1.191 10 H -0.233 1.233 11 H -0.166 1.166 12 N -0.310 5.310 13 C -0.100 4.100 14 C 0.034 3.966 15 H 0.124 0.876 16 O -0.369 6.369 17 C -0.029 4.029 18 N -0.269 5.269 19 C 0.313 3.687 20 O -0.388 6.388 21 O -0.057 6.057 22 N -0.089 5.089 23 C 0.024 3.976 24 C -0.059 4.059 25 C -0.131 4.131 26 C -0.136 4.136 27 C -0.109 4.109 28 C -0.136 4.136 29 C -0.100 4.100 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.154 0.846 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.231 0.769 38 H 0.139 0.861 39 H 0.164 0.836 40 H 0.159 0.841 41 H 0.171 0.829 42 H 0.174 0.826 43 H 0.175 0.825 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.126 2.541 -27.019 29.330 hybrid contribution -0.330 1.278 1.382 1.911 sum -11.456 3.819 -25.637 28.338 Atomic orbital electron populations 1.22721 0.98962 1.01534 1.00413 1.19399 0.90295 0.94036 0.88320 0.94988 1.21342 1.30092 1.12412 0.90584 0.95397 1.25914 0.97766 1.00356 0.95312 1.70075 1.48233 1.42827 0.98601 0.85732 0.78867 0.79613 0.77280 1.19128 1.23307 1.16639 1.60238 1.58652 1.09272 1.02869 1.22621 1.01348 0.95770 0.90238 1.22503 0.86063 0.96617 0.91453 0.87613 1.86604 1.19732 1.38707 1.91876 1.23025 1.03922 0.94872 0.81042 1.46708 1.08180 1.44993 1.27005 1.20636 0.84461 0.81862 0.81718 1.91131 1.37000 1.49445 1.61178 1.85547 1.24426 1.55356 1.40344 1.74170 0.89694 1.22279 1.22742 1.23192 0.95631 0.91841 0.86932 1.17504 0.84039 1.05475 0.98842 1.21780 0.95177 0.99315 0.96834 1.21468 0.93825 0.98299 1.00003 1.21834 1.01784 0.94724 0.92519 1.21476 0.92581 0.99691 0.99809 1.21351 0.96107 0.95524 0.97000 0.92737 0.94808 0.90982 0.92742 0.84579 0.90630 0.91591 0.76906 0.86141 0.83555 0.84131 0.82856 0.82590 0.82540 0.84598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.25 8.64 71.98 0.62 -5.63 16 2 C 0.19 7.92 2.16 44.17 0.10 8.01 16 3 H 0.03 1.36 6.86 -2.39 -0.02 1.35 16 4 C -0.51 -28.31 9.42 25.60 0.24 -28.07 16 5 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 6 C 0.00 0.15 5.45 84.65 0.46 0.61 16 7 N -0.96 -60.03 13.96 21.44 0.30 -59.73 16 8 Si 0.96 43.04 24.37 68.60 1.67 44.71 16 9 H -0.27 -11.18 6.87 99.48 0.68 -10.49 16 10 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 11 H -0.24 -9.71 6.53 99.48 0.65 -9.06 16 12 N -0.68 -23.84 6.10 -495.49 -3.02 -26.86 16 13 C 0.03 0.71 5.15 86.30 0.44 1.16 16 14 C 0.09 1.98 2.78 30.59 0.09 2.06 16 15 H 0.11 2.18 6.58 -2.39 -0.02 2.17 16 16 O -0.56 -16.51 12.99 -148.98 -1.94 -18.45 16 17 C 0.09 1.44 4.99 86.38 0.43 1.87 16 18 N -0.53 -11.47 2.70 -762.79 -2.06 -13.53 16 19 C 0.56 15.71 9.29 129.69 1.20 16.92 16 20 O -0.51 -16.75 17.99 19.04 0.34 -16.41 16 21 O -0.02 -0.48 11.25 92.77 1.04 0.56 16 22 N -0.35 -8.63 11.74 -54.06 -0.63 -9.26 16 23 C 0.29 6.09 7.79 136.27 1.06 7.15 16 24 C -0.06 -0.90 5.87 -20.08 -0.12 -1.02 16 25 C -0.11 -1.39 8.48 22.50 0.19 -1.20 16 26 C -0.12 -1.08 10.03 22.24 0.22 -0.86 16 27 C -0.09 -0.67 10.04 22.32 0.22 -0.44 16 28 C -0.12 -1.00 10.03 22.23 0.22 -0.78 16 29 C -0.08 -1.05 9.70 22.51 0.22 -0.83 16 30 H 0.05 1.91 8.13 -2.39 -0.02 1.89 16 31 H 0.03 1.28 3.27 -2.39 -0.01 1.27 16 32 H 0.07 1.88 7.45 -2.39 -0.02 1.86 16 33 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 34 H 0.34 11.23 8.47 -89.69 -0.76 10.47 16 35 H 0.08 1.81 8.06 -2.39 -0.02 1.80 16 36 H 0.07 1.13 7.44 -2.39 -0.02 1.11 16 37 H 0.38 10.20 9.04 -74.06 -0.67 9.53 16 38 H 0.12 1.79 8.13 -2.39 -0.02 1.77 16 39 H 0.15 1.30 5.94 -2.39 -0.01 1.29 16 40 H 0.14 1.52 2.96 -2.91 -0.01 1.51 16 41 H 0.15 0.81 8.06 -2.91 -0.02 0.79 16 42 H 0.16 0.35 8.06 -2.91 -0.02 0.33 16 43 H 0.16 0.55 8.06 -2.91 -0.02 0.52 16 44 H 0.14 1.73 7.89 -2.91 -0.02 1.71 16 Total: -1.00 -77.86 362.20 0.88 -76.98 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -0.43 Total: 23.04 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 5.61 Total: -1.04 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -5.42 Total: -109.39 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -0.55 Total: -34.29 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.67 Total: 44.71 kcal Total: -77.86 0.88 -76.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364740689.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.629 kcal (2) G-P(sol) polarization free energy of solvation -77.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds