Wall clock time and date at job start Tue Mar 31 2020 18:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 S 1.65599 * 120.00273 * 2 1 4 4 O 1.42098 * 104.27780 * 308.92741 * 3 2 1 5 5 O 1.42101 * 104.27943 * 181.06990 * 3 2 1 6 6 C 1.81394 * 104.44999 * 64.99878 * 3 2 1 7 7 C 1.50705 * 109.47248 * 180.02562 * 6 3 2 8 8 O 1.21275 * 119.99827 * 359.97438 * 7 6 3 9 9 N 1.34777 * 119.99986 * 180.02562 * 7 6 3 10 10 C 1.46928 * 120.62956 * 5.64375 * 9 7 6 11 11 C 1.53196 * 108.77308 * 126.41966 * 10 9 7 12 12 C 1.53048 * 109.31159 * 54.63296 * 11 10 9 13 13 C 1.53040 * 109.53771 * 298.63529 * 12 11 10 14 14 C 1.46919 * 120.62832 * 185.67418 * 9 7 6 15 15 H 1.09001 * 109.58936 * 113.79775 * 14 9 7 16 16 C 1.52995 * 109.59013 * 353.51199 * 14 9 7 17 17 H 1.09006 * 109.47142 * 307.37022 * 16 14 9 18 18 C 1.53004 * 109.47534 * 187.36903 * 16 14 9 19 19 N 1.46495 * 109.47398 * 67.36698 * 16 14 9 20 20 C 1.36932 * 120.00586 * 194.14792 * 19 16 14 21 21 H 1.08009 * 120.00108 * 359.97438 * 20 19 16 22 22 C 1.38815 * 120.00611 * 179.97438 * 20 19 16 23 23 N 1.31619 * 119.99442 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00052 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47362 * 60.00611 * 24 22 20 26 26 H 1.48502 * 109.46879 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47496 * 300.00000 * 24 22 20 28 28 H 1.09003 * 109.46971 * 59.99642 * 1 2 3 29 29 H 1.09002 * 109.47649 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47354 * 300.00583 * 1 2 3 31 31 H 0.97000 * 120.00003 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47488 * 59.99910 * 6 3 2 33 33 H 1.09002 * 109.47008 * 300.00142 * 6 3 2 34 34 H 1.09003 * 109.58642 * 246.20437 * 10 9 7 35 35 H 1.08993 * 109.58900 * 6.48647 * 10 9 7 36 36 H 1.08995 * 109.49704 * 174.58118 * 11 10 9 37 37 H 1.09001 * 109.49305 * 294.68410 * 11 10 9 38 38 H 1.09001 * 109.46107 * 58.65575 * 12 11 10 39 39 H 1.08996 * 109.45469 * 178.61663 * 12 11 10 40 40 H 1.09003 * 109.49753 * 301.41793 * 13 12 11 41 41 H 1.09002 * 109.49556 * 181.31643 * 13 12 11 42 42 H 1.09004 * 109.46935 * 65.61128 * 18 16 14 43 43 H 1.08992 * 109.47123 * 185.61317 * 18 16 14 44 44 H 1.09001 * 109.46931 * 305.61679 * 18 16 14 45 45 H 0.97004 * 119.99743 * 14.14507 * 19 16 14 46 46 H 0.97000 * 119.99575 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7189 2.1702 -1.0713 5 8 3.6606 1.0491 -0.0257 6 6 1.8764 2.1973 1.5920 7 6 2.5783 3.5256 1.7113 8 8 3.2899 3.9183 0.8112 9 7 2.4161 4.2764 2.8187 10 6 1.6595 3.7614 3.9681 11 6 2.5296 3.8787 5.2236 12 6 3.0012 5.3264 5.3791 13 6 3.8469 5.7222 4.1666 14 6 2.9918 5.6257 2.8992 15 1 2.1903 6.3631 2.9423 16 6 3.8626 5.8861 1.6684 17 1 4.5848 5.0774 1.5565 18 6 4.6051 7.2128 1.8403 19 7 3.0148 5.9521 0.4755 20 6 3.5794 5.8866 -0.7703 21 1 4.6499 5.7867 -0.8735 22 6 2.7760 5.9485 -1.9007 23 7 1.4716 6.0707 -1.7749 24 14 3.5465 5.8599 -3.6001 25 1 4.2741 4.5738 -3.7473 26 1 2.4816 5.9476 -4.6314 27 1 4.4960 6.9885 -3.7726 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.9499 -0.8400 0.0004 32 1 2.1957 1.5431 2.4032 33 1 0.7987 2.3497 1.6509 34 1 0.7493 4.3467 4.0983 35 1 1.4006 2.7166 3.7967 36 1 1.9469 3.5900 6.0982 37 1 3.3947 3.2223 5.1292 38 1 2.1354 5.9849 5.4485 39 1 3.6002 5.4177 6.2851 40 1 4.6996 5.0484 4.0822 41 1 4.2019 6.7455 4.2890 42 1 5.3096 7.1303 2.6680 43 1 5.1468 7.4473 0.9241 44 1 3.8878 8.0059 2.0515 45 1 2.0534 6.0421 0.5681 46 1 0.9102 6.1144 -2.5648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479834365.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:12 Heat of formation + Delta-G solvation = -43.708461 kcal Electronic energy + Delta-G solvation = -29786.623795 eV Core-core repulsion = 25841.030150 eV Total energy + Delta-G solvation = -3945.593645 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.24309 -37.11946 -36.63591 -35.45102 -35.28177 -34.89083 -32.75200 -32.16778 -29.95087 -29.72343 -27.74578 -25.97812 -24.83028 -24.21995 -22.65332 -21.02323 -20.00961 -19.53837 -18.67344 -17.60835 -16.71438 -16.52621 -16.22742 -15.94039 -15.33961 -15.18652 -14.65769 -14.43982 -14.29616 -14.00805 -13.68148 -13.53715 -13.27953 -13.16487 -12.91234 -12.72763 -12.63267 -12.13612 -12.05776 -11.98361 -11.56144 -11.49436 -11.38542 -11.32155 -11.14697 -10.92897 -10.89003 -10.64836 -10.58944 -10.50047 -10.35984 -10.09370 -9.65713 -9.57749 -9.31244 -8.59585 -8.53762 -8.04919 -6.38475 -5.37604 -2.58149 0.51172 3.03924 3.15866 3.31289 3.69536 3.74545 3.78437 4.17037 4.51065 4.57147 4.73943 4.84533 4.89580 4.96663 4.99957 5.13147 5.18250 5.22901 5.36022 5.38672 5.45170 5.57599 5.69073 5.75125 5.76099 5.79581 5.87921 5.95772 5.96820 6.06789 6.10245 6.16690 6.36941 6.46381 6.50583 6.82333 6.89852 6.95163 7.10626 7.39384 7.79951 8.08756 8.70934 8.81185 9.92002 10.44971 10.80319 11.86741 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.008639 B = 0.007597 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.247847 B = 3684.618992 C = 6232.972689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.133 6.133 3 S 2.638 3.362 4 O -0.908 6.908 5 O -0.949 6.949 6 C -0.666 4.666 7 C 0.500 3.500 8 O -0.426 6.426 9 N -0.607 5.607 10 C 0.110 3.890 11 C -0.135 4.135 12 C -0.119 4.119 13 C -0.129 4.129 14 C 0.147 3.853 15 H 0.068 0.932 16 C 0.176 3.824 17 H 0.063 0.937 18 C -0.167 4.167 19 N -0.691 5.691 20 C -0.201 4.201 21 H 0.063 0.937 22 C -0.013 4.013 23 N -0.935 5.935 24 Si 0.895 3.105 25 H -0.288 1.288 26 H -0.294 1.294 27 H -0.292 1.292 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.413 0.587 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.035 0.965 43 H 0.058 0.942 44 H 0.042 0.958 45 H 0.377 0.623 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.443 -10.882 17.277 20.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.892 5.892 3 S 2.724 3.276 4 O -0.898 6.898 5 O -0.939 6.939 6 C -0.795 4.795 7 C 0.281 3.719 8 O -0.293 6.293 9 N -0.344 5.344 10 C -0.014 4.014 11 C -0.173 4.173 12 C -0.156 4.156 13 C -0.168 4.168 14 C 0.044 3.956 15 H 0.086 0.914 16 C 0.067 3.933 17 H 0.081 0.919 18 C -0.228 4.228 19 N -0.332 5.332 20 C -0.332 4.332 21 H 0.081 0.919 22 C -0.208 4.208 23 N -0.585 5.585 24 Si 0.728 3.272 25 H -0.215 1.215 26 H -0.220 1.220 27 H -0.220 1.220 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.246 0.754 32 H 0.162 0.838 33 H 0.164 0.836 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.210 0.790 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.518 -10.186 15.889 19.041 hybrid contribution -0.467 -0.583 -0.034 0.748 sum -2.985 -10.769 15.854 19.397 Atomic orbital electron populations 1.21470 0.79211 1.03702 1.02106 1.55831 1.15865 1.25199 1.92336 1.04566 0.73795 0.73030 0.76204 1.93701 1.78206 1.70767 1.47083 1.93562 1.32351 1.81462 1.86560 1.31086 1.12091 1.08770 1.27515 1.18997 0.85149 0.84369 0.83354 1.91333 1.34538 1.66463 1.36961 1.47592 1.55647 1.16271 1.14903 1.21632 0.94383 0.99612 0.85789 1.21928 1.00216 0.97804 0.97378 1.21517 0.99934 0.96069 0.98103 1.22013 0.98557 1.02271 0.93946 1.21578 0.95773 0.82150 0.96084 0.91382 1.20500 0.93010 0.94764 0.85076 0.91942 1.22541 0.99797 1.00055 1.00383 1.42303 1.05159 1.85484 1.00260 1.18907 0.91573 1.39611 0.83117 0.91883 1.24514 0.95334 1.03928 0.97010 1.69584 1.02496 1.58711 1.27745 0.86424 0.77662 0.77571 0.85571 1.21455 1.22045 1.21967 0.91076 0.90327 0.92584 0.75405 0.83843 0.83610 0.91761 0.90308 0.91210 0.91570 0.91896 0.92023 0.91498 0.90467 0.94560 0.92276 0.93909 0.79008 0.94120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 11.03 59.84 0.66 1.41 16 2 N -1.13 -13.20 6.07 -16.63 -0.10 -13.30 16 3 S 2.64 46.68 4.60 -107.50 -0.49 46.19 16 4 O -0.91 -21.48 17.73 -57.55 -1.02 -22.50 16 5 O -0.95 -19.66 18.08 -57.55 -1.04 -20.70 16 6 C -0.67 -9.39 4.92 36.01 0.18 -9.21 16 7 C 0.50 9.46 7.37 -10.98 -0.08 9.38 16 8 O -0.43 -10.33 8.70 5.56 0.05 -10.28 16 9 N -0.61 -9.53 2.97 -165.22 -0.49 -10.02 16 10 C 0.11 1.19 6.33 -3.71 -0.02 1.17 16 11 C -0.13 -1.24 6.08 -26.60 -0.16 -1.40 16 12 C -0.12 -1.17 5.88 -26.69 -0.16 -1.33 16 13 C -0.13 -1.63 4.64 -26.61 -0.12 -1.76 16 14 C 0.15 2.43 2.56 -67.60 -0.17 2.26 16 15 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 16 C 0.18 3.70 1.78 -67.93 -0.12 3.58 16 17 H 0.06 1.45 6.47 -51.93 -0.34 1.12 16 18 C -0.17 -3.15 8.67 37.16 0.32 -2.83 16 19 N -0.69 -18.13 3.05 -53.42 -0.16 -18.29 16 20 C -0.20 -6.02 8.10 -15.06 -0.12 -6.14 16 21 H 0.06 1.91 7.83 -52.48 -0.41 1.49 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.94 -30.35 13.06 55.49 0.72 -29.62 16 24 Si 0.90 25.30 29.55 -169.99 -5.02 20.28 16 25 H -0.29 -8.25 7.11 56.52 0.40 -7.84 16 26 H -0.29 -8.30 7.11 56.52 0.40 -7.90 16 27 H -0.29 -7.96 7.11 56.52 0.40 -7.55 16 28 H 0.07 0.77 8.04 -51.93 -0.42 0.36 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.39 7.73 -51.93 -0.40 -0.01 16 31 H 0.41 3.86 8.92 -34.47 -0.31 3.55 16 32 H 0.14 1.39 7.46 -51.92 -0.39 1.01 16 33 H 0.15 1.65 7.75 -51.92 -0.40 1.25 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.69 5.96 -51.93 -0.31 0.38 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.08 0.92 6.83 -51.93 -0.35 0.57 16 42 H 0.04 0.56 6.82 -51.93 -0.35 0.21 16 43 H 0.06 1.24 7.88 -51.93 -0.41 0.83 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.38 10.54 7.70 -40.82 -0.31 10.22 16 46 H 0.25 7.97 8.31 -40.82 -0.34 7.63 16 LS Contribution 368.98 15.07 5.56 5.56 Total: -1.00 -41.11 368.98 -9.24 -50.35 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -7.34 Total: 7.72 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 0.10 Total: -5.38 kcal Atomic # 7 Polarization: -71.21 SS G_CDS: -0.03 Total: -71.24 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -2.01 Total: -53.47 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.02 Total: 20.28 kcal Atomic # 16 Polarization: 46.68 SS G_CDS: -0.49 Total: 46.19 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -41.11 -9.24 -50.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479834365.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.643 kcal (2) G-P(sol) polarization free energy of solvation -41.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds