Wall clock time and date at job start Tue Mar 31 2020 18:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 S 1.65599 * 120.00273 * 2 1 4 4 O 1.42098 * 104.27780 * 308.92741 * 3 2 1 5 5 O 1.42101 * 104.27943 * 181.06990 * 3 2 1 6 6 C 1.81394 * 104.44999 * 64.99878 * 3 2 1 7 7 C 1.50705 * 109.47248 * 180.02562 * 6 3 2 8 8 O 1.21275 * 119.99827 * 359.97438 * 7 6 3 9 9 N 1.34777 * 119.99986 * 180.02562 * 7 6 3 10 10 C 1.46928 * 120.62956 * 5.64375 * 9 7 6 11 11 C 1.53196 * 108.77308 * 126.41966 * 10 9 7 12 12 C 1.53048 * 109.31159 * 54.63296 * 11 10 9 13 13 C 1.53040 * 109.53771 * 298.63529 * 12 11 10 14 14 C 1.46919 * 120.62832 * 185.67418 * 9 7 6 15 15 H 1.09001 * 109.58936 * 113.79775 * 14 9 7 16 16 C 1.52995 * 109.59013 * 353.51199 * 14 9 7 17 17 H 1.09006 * 109.47142 * 307.37022 * 16 14 9 18 18 C 1.53004 * 109.47534 * 187.36903 * 16 14 9 19 19 N 1.46495 * 109.47398 * 67.36698 * 16 14 9 20 20 C 1.36932 * 120.00586 * 194.14792 * 19 16 14 21 21 H 1.08009 * 120.00108 * 359.97438 * 20 19 16 22 22 C 1.38815 * 120.00611 * 179.97438 * 20 19 16 23 23 N 1.31619 * 119.99442 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00052 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47362 * 60.00611 * 24 22 20 26 26 H 1.48502 * 109.46879 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47496 * 300.00000 * 24 22 20 28 28 H 1.09003 * 109.46971 * 59.99642 * 1 2 3 29 29 H 1.09002 * 109.47649 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47354 * 300.00583 * 1 2 3 31 31 H 0.97000 * 120.00003 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.47488 * 59.99910 * 6 3 2 33 33 H 1.09002 * 109.47008 * 300.00142 * 6 3 2 34 34 H 1.09003 * 109.58642 * 246.20437 * 10 9 7 35 35 H 1.08993 * 109.58900 * 6.48647 * 10 9 7 36 36 H 1.08995 * 109.49704 * 174.58118 * 11 10 9 37 37 H 1.09001 * 109.49305 * 294.68410 * 11 10 9 38 38 H 1.09001 * 109.46107 * 58.65575 * 12 11 10 39 39 H 1.08996 * 109.45469 * 178.61663 * 12 11 10 40 40 H 1.09003 * 109.49753 * 301.41793 * 13 12 11 41 41 H 1.09002 * 109.49556 * 181.31643 * 13 12 11 42 42 H 1.09004 * 109.46935 * 65.61128 * 18 16 14 43 43 H 1.08992 * 109.47123 * 185.61317 * 18 16 14 44 44 H 1.09001 * 109.46931 * 305.61679 * 18 16 14 45 45 H 0.97004 * 119.99743 * 14.14507 * 19 16 14 46 46 H 0.97000 * 119.99575 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7189 2.1702 -1.0713 5 8 3.6606 1.0491 -0.0257 6 6 1.8764 2.1973 1.5920 7 6 2.5783 3.5256 1.7113 8 8 3.2899 3.9183 0.8112 9 7 2.4161 4.2764 2.8187 10 6 1.6595 3.7614 3.9681 11 6 2.5296 3.8787 5.2236 12 6 3.0012 5.3264 5.3791 13 6 3.8469 5.7222 4.1666 14 6 2.9918 5.6257 2.8992 15 1 2.1903 6.3631 2.9423 16 6 3.8626 5.8861 1.6684 17 1 4.5848 5.0774 1.5565 18 6 4.6051 7.2128 1.8403 19 7 3.0148 5.9521 0.4755 20 6 3.5794 5.8866 -0.7703 21 1 4.6499 5.7867 -0.8735 22 6 2.7760 5.9485 -1.9007 23 7 1.4716 6.0707 -1.7749 24 14 3.5465 5.8599 -3.6001 25 1 4.2741 4.5738 -3.7473 26 1 2.4816 5.9476 -4.6314 27 1 4.4960 6.9885 -3.7726 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.9499 -0.8400 0.0004 32 1 2.1957 1.5431 2.4032 33 1 0.7987 2.3497 1.6509 34 1 0.7493 4.3467 4.0983 35 1 1.4006 2.7166 3.7967 36 1 1.9469 3.5900 6.0982 37 1 3.3947 3.2223 5.1292 38 1 2.1354 5.9849 5.4485 39 1 3.6002 5.4177 6.2851 40 1 4.6996 5.0484 4.0822 41 1 4.2019 6.7455 4.2890 42 1 5.3096 7.1303 2.6680 43 1 5.1468 7.4473 0.9241 44 1 3.8878 8.0059 2.0515 45 1 2.0534 6.0421 0.5681 46 1 0.9102 6.1144 -2.5648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479834365.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:10 Heat of formation + Delta-G solvation = -78.999321 kcal Electronic energy + Delta-G solvation = -29788.154121 eV Core-core repulsion = 25841.030150 eV Total energy + Delta-G solvation = -3947.123972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.57942 -38.37685 -38.15001 -36.96272 -36.94693 -35.87908 -34.27215 -33.73653 -31.53983 -31.03398 -29.36062 -26.80890 -26.26699 -25.76230 -24.14639 -22.21524 -21.44186 -20.77963 -20.00736 -19.00753 -18.66346 -17.77691 -17.49854 -17.24165 -16.76635 -16.56500 -16.29815 -15.63017 -15.52825 -15.47018 -14.92881 -14.81924 -14.61168 -14.45835 -14.20221 -14.01330 -13.72525 -13.62392 -13.53254 -13.33853 -13.10354 -13.02428 -13.01226 -12.77406 -12.56410 -12.47300 -12.42530 -12.16031 -12.04221 -11.85313 -11.69891 -11.59340 -11.37067 -11.18761 -10.75307 -10.51312 -10.06819 -9.46851 -8.50123 -7.75857 -4.90697 -0.81623 1.37088 1.45380 1.47645 1.76566 1.85831 2.12670 2.66331 2.89518 3.27001 3.40129 3.60300 3.83992 3.87821 3.97835 4.05330 4.16862 4.20392 4.25397 4.34290 4.39261 4.42940 4.65221 4.66975 4.75383 4.80064 4.89429 4.90243 4.97015 5.00391 5.06892 5.11045 5.15824 5.22279 5.30096 5.45231 5.49852 5.58456 5.65668 5.89030 6.13036 6.47090 6.52238 7.35556 7.54860 8.31280 8.53526 9.48855 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.008639 B = 0.007597 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.247847 B = 3684.618992 C = 6232.972689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -1.114 6.114 3 S 2.633 3.367 4 O -0.986 6.986 5 O -0.996 6.996 6 C -0.643 4.643 7 C 0.486 3.514 8 O -0.497 6.497 9 N -0.602 5.602 10 C 0.096 3.904 11 C -0.130 4.130 12 C -0.115 4.115 13 C -0.122 4.122 14 C 0.149 3.851 15 H 0.065 0.935 16 C 0.172 3.828 17 H 0.036 0.964 18 C -0.157 4.157 19 N -0.694 5.694 20 C -0.178 4.178 21 H 0.050 0.950 22 C -0.077 4.077 23 N -0.964 5.964 24 Si 0.937 3.063 25 H -0.301 1.301 26 H -0.294 1.294 27 H -0.275 1.275 28 H 0.045 0.955 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.426 0.574 32 H 0.199 0.801 33 H 0.183 0.817 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.027 0.973 44 H 0.048 0.952 45 H 0.365 0.635 46 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.513 -12.135 21.641 25.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.877 5.877 3 S 2.724 3.276 4 O -0.975 6.975 5 O -0.986 6.986 6 C -0.775 4.775 7 C 0.270 3.730 8 O -0.370 6.370 9 N -0.338 5.338 10 C -0.026 4.026 11 C -0.168 4.168 12 C -0.153 4.153 13 C -0.161 4.161 14 C 0.046 3.954 15 H 0.083 0.917 16 C 0.064 3.936 17 H 0.054 0.946 18 C -0.217 4.217 19 N -0.333 5.333 20 C -0.311 4.311 21 H 0.068 0.932 22 C -0.268 4.268 23 N -0.617 5.617 24 Si 0.769 3.231 25 H -0.229 1.229 26 H -0.220 1.220 27 H -0.202 1.202 28 H 0.064 0.936 29 H 0.136 0.864 30 H 0.105 0.895 31 H 0.262 0.738 32 H 0.216 0.784 33 H 0.200 0.800 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.047 0.953 44 H 0.067 0.933 45 H 0.196 0.804 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.556 -11.462 20.299 23.581 hybrid contribution -0.129 -0.301 -1.160 1.205 sum -3.686 -11.763 19.139 22.765 Atomic orbital electron populations 1.21844 0.77092 1.06388 1.02473 1.55211 1.16937 1.23488 1.92076 1.04031 0.72921 0.73617 0.76990 1.93623 1.79100 1.73088 1.51693 1.93487 1.35249 1.82214 1.87659 1.30808 1.13883 1.06823 1.26029 1.19797 0.84263 0.85680 0.83278 1.91315 1.37624 1.68821 1.39219 1.47779 1.55044 1.15514 1.15453 1.22117 0.94589 1.01331 0.84529 1.21933 1.00217 0.97164 0.97495 1.21526 0.99928 0.96756 0.97085 1.21964 0.98093 1.02844 0.93154 1.21468 0.95543 0.82845 0.95559 0.91672 1.20617 0.92970 0.94673 0.85384 0.94580 1.22386 1.00137 0.98882 1.00316 1.42299 1.04875 1.85521 1.00650 1.19037 0.90903 1.36178 0.84991 0.93163 1.25059 0.95971 1.06159 0.99653 1.69698 1.03138 1.61412 1.27456 0.85719 0.77170 0.77282 0.82920 1.22930 1.22014 1.20151 0.93607 0.86430 0.89532 0.73796 0.78416 0.79972 0.90469 0.87476 0.87851 0.91881 0.91239 0.89917 0.92216 0.89621 0.90829 0.95332 0.93305 0.80360 0.95132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.07 11.03 127.77 1.41 2.48 16 2 N -1.11 -24.29 6.07 -206.54 -1.25 -25.54 16 3 S 2.63 94.46 4.60 -56.49 -0.26 94.20 16 4 O -0.99 -49.37 17.73 -127.64 -2.26 -51.63 16 5 O -1.00 -42.84 18.08 -127.64 -2.31 -45.15 16 6 C -0.64 -16.45 4.92 71.24 0.35 -16.10 16 7 C 0.49 18.02 7.37 87.66 0.65 18.66 16 8 O -0.50 -25.00 8.70 -3.02 -0.03 -25.02 16 9 N -0.60 -17.53 2.97 -795.04 -2.36 -19.89 16 10 C 0.10 1.61 6.33 86.36 0.55 2.16 16 11 C -0.13 -1.67 6.08 30.68 0.19 -1.49 16 12 C -0.12 -1.73 5.88 30.62 0.18 -1.55 16 13 C -0.12 -2.72 4.64 30.67 0.14 -2.58 16 14 C 0.15 4.71 2.56 44.98 0.11 4.83 16 15 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 16 C 0.17 7.33 1.78 44.99 0.08 7.41 16 17 H 0.04 1.75 6.47 -2.38 -0.02 1.74 16 18 C -0.16 -5.92 8.67 71.98 0.62 -5.30 16 19 N -0.69 -37.80 3.05 -322.94 -0.99 -38.79 16 20 C -0.18 -11.20 8.10 84.03 0.68 -10.52 16 21 H 0.05 3.22 7.83 -2.91 -0.02 3.19 16 22 C -0.08 -5.07 5.50 84.86 0.47 -4.61 16 23 N -0.96 -65.27 13.06 21.65 0.28 -64.99 16 24 Si 0.94 54.24 29.55 68.60 2.03 56.26 16 25 H -0.30 -17.87 7.11 99.48 0.71 -17.16 16 26 H -0.29 -16.82 7.11 99.48 0.71 -16.12 16 27 H -0.28 -14.91 7.11 99.48 0.71 -14.20 16 28 H 0.05 0.98 8.04 -2.39 -0.02 0.96 16 29 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 0.85 7.73 -2.39 -0.02 0.83 16 31 H 0.43 7.24 8.92 -96.75 -0.86 6.38 16 32 H 0.20 2.81 7.46 -2.39 -0.02 2.79 16 33 H 0.18 3.36 7.75 -2.39 -0.02 3.34 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.11 1.19 5.96 -2.39 -0.01 1.18 16 36 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 40 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.09 1.76 6.83 -2.39 -0.02 1.75 16 42 H 0.07 2.19 6.82 -2.38 -0.02 2.17 16 43 H 0.03 1.21 7.88 -2.39 -0.02 1.19 16 44 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.36 21.18 7.70 -92.71 -0.71 20.46 16 46 H 0.24 16.07 8.31 -92.71 -0.77 15.30 16 Total: -1.00 -100.16 368.98 -2.30 -102.46 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: -0.58 Total: 24.68 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 5.43 Total: -6.59 kcal Atomic # 7 Polarization: -144.89 SS G_CDS: -4.32 Total: -149.21 kcal Atomic # 8 Polarization: -117.21 SS G_CDS: -4.60 Total: -121.81 kcal Atomic # 14 Polarization: 54.24 SS G_CDS: 2.03 Total: 56.26 kcal Atomic # 16 Polarization: 94.46 SS G_CDS: -0.26 Total: 94.20 kcal Total: -100.16 -2.30 -102.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479834365.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.458 kcal (2) G-P(sol) polarization free energy of solvation -100.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds