Wall clock time and date at job start Tue Mar 31 2020 18:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47422 * 2 1 4 4 C 1.53004 * 109.46914 * 239.99833 * 2 1 3 5 5 N 1.46499 * 109.47066 * 185.00638 * 4 2 1 6 6 C 1.46499 * 119.99556 * 269.99947 * 5 4 2 7 7 C 1.34771 * 120.00437 * 89.99625 * 5 4 2 8 8 O 1.21283 * 120.00276 * 0.02562 * 7 5 4 9 9 C 1.50704 * 120.00059 * 179.97438 * 7 5 4 10 10 N 1.46501 * 109.46843 * 180.02562 * 9 7 5 11 11 C 1.39464 * 126.25915 * 270.16787 * 10 9 7 12 12 C 1.38612 * 133.35881 * 359.96784 * 11 10 9 13 13 C 1.38129 * 119.82112 * 180.37352 * 12 11 10 14 14 C 1.38409 * 120.18847 * 359.96478 * 13 12 11 15 15 C 1.38123 * 120.31157 * 0.03537 * 14 13 12 16 16 C 1.38610 * 119.91414 * 359.97438 * 15 14 13 17 17 O 1.35558 * 132.99569 * 179.97438 * 16 15 14 18 18 C 1.34223 * 109.18234 * 180.02562 * 17 16 15 19 19 O 1.21603 * 125.27599 * 179.97438 * 18 17 16 20 20 N 1.46506 * 109.46806 * 120.00107 * 2 1 3 21 21 C 1.36936 * 119.99780 * 274.99155 * 20 2 1 22 22 H 1.07999 * 119.99946 * 0.02562 * 21 20 2 23 23 C 1.38810 * 119.99901 * 179.97438 * 21 20 2 24 24 N 1.31622 * 119.99889 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99935 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47151 * 60.00254 * 25 23 21 27 27 H 1.48500 * 109.46885 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.46907 * 300.00285 * 25 23 21 29 29 H 1.08998 * 109.47422 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47154 * 300.00594 * 1 2 3 31 31 H 1.09000 * 109.46808 * 59.99979 * 1 2 3 32 32 H 1.08997 * 109.47379 * 64.99992 * 4 2 1 33 33 H 1.09009 * 109.46901 * 305.00123 * 4 2 1 34 34 H 1.09000 * 109.47272 * 269.99774 * 6 5 4 35 35 H 1.08999 * 109.47604 * 30.00037 * 6 5 4 36 36 H 1.09000 * 109.47491 * 150.00218 * 6 5 4 37 37 H 1.08997 * 109.46927 * 60.00626 * 9 7 5 38 38 H 1.09002 * 109.47037 * 300.00271 * 9 7 5 39 39 H 1.07999 * 120.09081 * 0.37668 * 12 11 10 40 40 H 1.08001 * 119.90404 * 179.97438 * 13 12 11 41 41 H 1.08001 * 119.84498 * 180.02562 * 14 13 12 42 42 H 1.07995 * 120.04044 * 180.02562 * 15 14 13 43 43 H 0.96993 * 119.99911 * 95.00106 * 20 2 1 44 44 H 0.97000 * 119.99379 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8266 -1.1906 6 6 4.3343 0.2338 -1.7613 7 6 4.0756 -1.8988 -0.6115 8 8 3.3850 -2.7769 -0.1394 9 6 5.5776 -2.0073 -0.5517 10 7 5.9506 -3.2543 0.1208 11 6 6.1566 -3.4235 1.4897 12 6 6.0886 -2.5648 2.5756 13 6 6.3613 -3.0386 3.8441 14 6 6.7012 -4.3670 4.0328 15 6 6.7709 -5.2285 2.9554 16 6 6.4991 -4.7622 1.6787 17 8 6.4879 -5.3564 0.4604 18 6 6.1546 -4.4483 -0.4702 19 8 6.0577 -4.6676 -1.6624 20 7 2.0183 -0.6907 1.1962 21 6 2.1492 -0.0075 2.3757 22 1 1.8921 1.0403 2.4243 23 6 2.6113 -0.6620 3.5093 24 7 2.9241 -1.9391 3.4502 25 14 2.7892 0.2698 5.1185 26 1 1.4667 0.8067 5.5284 27 1 3.2981 -0.6486 6.1686 28 1 3.7446 1.3921 4.9376 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7516 -0.1585 -2.1370 33 1 1.6052 -1.7199 -1.2951 34 1 4.5425 0.0090 -2.8073 35 1 3.8091 1.1864 -1.6919 36 1 5.2722 0.2950 -1.2093 37 1 5.9812 -1.1602 0.0029 38 1 5.9826 -2.0053 -1.5637 39 1 5.8230 -1.5281 2.4304 40 1 6.3091 -2.3706 4.6912 41 1 6.9129 -4.7316 5.0271 42 1 7.0361 -6.2642 3.1077 43 1 2.2489 -1.6318 1.1526 44 1 3.2474 -2.3963 4.2423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507151315.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:59 Heat of formation + Delta-G solvation = -39.068002 kcal Electronic energy + Delta-G solvation = -30466.234235 eV Core-core repulsion = 26385.397863 eV Total energy + Delta-G solvation = -4080.836371 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.32361 -40.98578 -39.61630 -38.48889 -37.69290 -36.68176 -35.97008 -33.84493 -31.70512 -31.20055 -30.46938 -29.55839 -28.10796 -26.55428 -25.52494 -24.46511 -23.77623 -23.21120 -21.55403 -20.32882 -19.59259 -19.25743 -18.84384 -18.60443 -17.75000 -17.68618 -17.17535 -16.79469 -16.37928 -16.01952 -15.66236 -15.52621 -15.25030 -14.89641 -14.81226 -14.63339 -14.43366 -14.21033 -13.81982 -13.57198 -13.46535 -13.27264 -13.26445 -13.19335 -12.92777 -12.80210 -12.70719 -12.38525 -12.30492 -12.11801 -12.03629 -11.99669 -11.80439 -11.48292 -10.86975 -10.73852 -9.70091 -9.49389 -9.14597 -8.78242 -7.66909 -4.98587 0.19063 0.22127 0.84262 1.31676 1.49689 1.53450 1.57680 1.65819 1.77453 2.18444 2.65915 2.70543 3.37241 3.48012 3.51014 3.57568 3.93225 3.97168 4.02377 4.19044 4.23615 4.26400 4.34641 4.38181 4.43389 4.52480 4.61678 4.68715 4.76770 4.79804 4.92126 4.96907 5.04280 5.09972 5.21371 5.27398 5.37268 5.47554 5.52936 5.63662 5.64700 5.71948 6.13500 6.36291 6.46871 6.50509 7.25324 7.56094 8.35696 8.62433 9.50905 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.009460 B = 0.006497 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.075895 B = 4308.411651 C = 6581.670480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.147 3.853 3 H 0.051 0.949 4 C 0.117 3.883 5 N -0.603 5.603 6 C 0.070 3.930 7 C 0.493 3.507 8 O -0.561 6.561 9 C 0.118 3.882 10 N -0.522 5.522 11 C 0.061 3.939 12 C -0.068 4.068 13 C -0.095 4.095 14 C -0.096 4.096 15 C -0.082 4.082 16 C 0.004 3.996 17 O -0.246 6.246 18 C 0.634 3.366 19 O -0.527 6.527 20 N -0.735 5.735 21 C -0.249 4.249 22 H 0.061 0.939 23 C -0.054 4.054 24 N -0.932 5.932 25 Si 0.950 3.050 26 H -0.297 1.297 27 H -0.291 1.291 28 H -0.280 1.280 29 H 0.029 0.971 30 H 0.034 0.966 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.116 0.884 40 H 0.144 0.856 41 H 0.178 0.822 42 H 0.167 0.833 43 H 0.384 0.616 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.341 3.280 -5.503 12.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.038 3.962 3 H 0.069 0.931 4 C -0.007 4.007 5 N -0.336 5.336 6 C -0.072 4.072 7 C 0.279 3.721 8 O -0.439 6.439 9 C -0.006 4.006 10 N -0.252 5.252 11 C -0.035 4.035 12 C -0.088 4.088 13 C -0.114 4.114 14 C -0.114 4.114 15 C -0.101 4.101 16 C -0.041 4.041 17 O -0.152 6.152 18 C 0.390 3.610 19 O -0.414 6.414 20 N -0.380 5.380 21 C -0.382 4.382 22 H 0.079 0.921 23 C -0.249 4.249 24 N -0.580 5.580 25 Si 0.781 3.219 26 H -0.225 1.225 27 H -0.217 1.217 28 H -0.206 1.206 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.137 0.863 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.134 0.866 40 H 0.162 0.838 41 H 0.195 0.805 42 H 0.184 0.816 43 H 0.220 0.780 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.992 2.624 -5.940 11.917 hybrid contribution -0.629 0.239 0.893 1.118 sum 9.363 2.862 -5.047 11.015 Atomic orbital electron populations 1.22267 0.98090 1.00140 1.00985 1.20906 0.92688 0.95626 0.87027 0.93115 1.21791 0.79393 1.00857 0.98647 1.47667 1.07184 1.20977 1.57742 1.22131 0.95410 0.90325 0.99331 1.21078 0.91087 0.82296 0.77591 1.90722 1.65107 1.41651 1.46375 1.21683 0.92684 0.84515 1.01686 1.45211 1.63446 1.10303 1.06235 1.18631 1.04475 0.95789 0.84645 1.20036 0.99204 0.99147 0.90437 1.21202 0.97448 0.97105 0.95610 1.21316 0.98646 0.92018 0.99410 1.20363 1.01470 1.02495 0.85739 1.19458 1.08737 0.89670 0.86263 1.84854 1.76997 1.37115 1.16202 1.18491 0.78271 0.79179 0.85037 1.91051 1.59401 1.81095 1.09821 1.42895 1.78124 1.11257 1.05678 1.19375 1.36304 0.93587 0.88884 0.92101 1.25289 1.03183 0.96639 0.99771 1.69921 1.50811 1.08938 1.28363 0.85607 0.77177 0.77725 0.81401 1.22498 1.21716 1.20598 0.95189 0.94650 0.90386 0.86283 0.93259 0.89885 0.89418 0.90148 0.83905 0.83505 0.86583 0.83795 0.80504 0.81581 0.77962 0.94309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.45 9.49 71.98 0.68 -4.77 16 2 C 0.15 5.62 3.20 44.99 0.14 5.76 16 3 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 4 C 0.12 3.72 5.14 86.38 0.44 4.17 16 5 N -0.60 -18.37 2.77 -846.75 -2.35 -20.72 16 6 C 0.07 1.27 10.24 127.77 1.31 2.58 16 7 C 0.49 18.70 7.04 87.66 0.62 19.32 16 8 O -0.56 -27.99 13.75 -3.04 -0.04 -28.03 16 9 C 0.12 3.57 5.07 85.63 0.43 4.00 16 10 N -0.52 -19.15 2.29 -765.11 -1.75 -20.90 16 11 C 0.06 2.26 6.84 38.31 0.26 2.52 16 12 C -0.07 -2.39 10.04 22.33 0.22 -2.16 16 13 C -0.09 -2.80 10.04 22.28 0.22 -2.57 16 14 C -0.10 -2.30 10.03 22.28 0.22 -2.07 16 15 C -0.08 -2.18 10.06 22.33 0.22 -1.95 16 16 C 0.00 0.15 7.35 22.65 0.17 0.31 16 17 O -0.25 -9.40 10.72 8.59 0.09 -9.31 16 18 C 0.63 25.47 9.07 129.79 1.18 26.65 16 19 O -0.53 -22.79 17.81 19.18 0.34 -22.45 16 20 N -0.73 -36.77 4.52 -322.93 -1.46 -38.23 16 21 C -0.25 -13.40 9.93 84.03 0.83 -12.57 16 22 H 0.06 3.20 7.83 -2.91 -0.02 3.18 16 23 C -0.05 -2.94 5.50 84.86 0.47 -2.47 16 24 N -0.93 -53.31 13.06 21.65 0.28 -53.02 16 25 Si 0.95 43.73 29.55 68.60 2.03 45.76 16 26 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 27 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 28 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 29 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.12 2.66 8.07 -2.39 -0.02 2.64 16 33 H 0.05 1.88 7.42 -2.38 -0.02 1.86 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.09 1.40 8.07 -2.39 -0.02 1.39 16 36 H 0.08 1.26 6.44 -2.39 -0.02 1.24 16 37 H 0.14 3.55 7.40 -2.39 -0.02 3.54 16 38 H 0.15 3.47 8.03 -2.39 -0.02 3.45 16 39 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 40 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 41 H 0.18 2.75 8.06 -2.91 -0.02 2.72 16 42 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 43 H 0.38 21.64 5.02 -92.71 -0.47 21.17 16 44 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -79.65 374.31 5.13 -74.52 By element: Atomic # 1 Polarization: 35.08 SS G_CDS: 0.56 Total: 35.65 kcal Atomic # 6 Polarization: 29.31 SS G_CDS: 7.43 Total: 36.74 kcal Atomic # 7 Polarization: -127.59 SS G_CDS: -5.28 Total: -132.88 kcal Atomic # 8 Polarization: -60.18 SS G_CDS: 0.39 Total: -59.79 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -79.65 5.13 -74.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507151315.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.449 kcal (2) G-P(sol) polarization free energy of solvation -79.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds