Wall clock time and date at job start Tue Mar 31 2020 18:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 5 5 N 1.46501 * 109.47260 * 64.99377 * 4 2 1 6 6 C 1.36946 * 119.99989 * 180.02562 * 5 4 2 7 7 H 1.07997 * 119.99902 * 0.02562 * 6 5 4 8 8 C 1.38812 * 119.99987 * 180.02562 * 6 5 4 9 9 N 1.31617 * 119.99851 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00025 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.46899 * 90.00087 * 10 8 6 12 12 H 1.48493 * 109.47272 * 210.00310 * 10 8 6 13 13 H 1.48496 * 109.47386 * 330.00871 * 10 8 6 14 14 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 15 15 N 1.46505 * 109.47212 * 295.00240 * 14 2 1 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 2 17 17 O 1.21280 * 120.00597 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99622 * 179.97438 * 16 15 14 19 19 N 1.46504 * 109.47396 * 180.02562 * 18 16 15 20 20 C 1.47024 * 120.99310 * 84.99602 * 19 18 16 21 21 C 1.52754 * 109.48286 * 122.53529 * 20 19 18 22 22 C 1.52684 * 110.66564 * 64.31856 * 21 20 19 23 23 C 1.53277 * 109.77047 * 289.71924 * 22 21 20 24 24 S 1.66405 * 120.99660 * 264.72587 * 19 18 16 25 25 O 1.42097 * 104.53586 * 344.38487 * 24 19 18 26 26 O 1.42105 * 104.53535 * 112.78680 * 24 19 18 27 27 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 28 28 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 30 30 H 1.09001 * 109.47698 * 184.99641 * 4 2 1 31 31 H 1.09009 * 109.47010 * 304.99646 * 4 2 1 32 32 H 0.96994 * 120.00443 * 0.02562 * 5 4 2 33 33 H 0.96996 * 119.99610 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.47153 * 175.00232 * 14 2 1 35 35 H 1.09001 * 109.46832 * 55.00423 * 14 2 1 36 36 H 0.96996 * 119.99606 * 0.02562 * 15 14 2 37 37 H 1.09001 * 109.47380 * 300.00190 * 18 16 15 38 38 H 1.09002 * 109.47060 * 60.00278 * 18 16 15 39 39 H 1.09000 * 109.47541 * 242.54432 * 20 19 18 40 40 H 1.09004 * 109.47084 * 2.53831 * 20 19 18 41 41 H 1.09007 * 109.23668 * 184.62387 * 21 20 19 42 42 H 1.08991 * 109.24207 * 304.01204 * 21 20 19 43 43 H 1.09009 * 109.42273 * 49.80938 * 22 21 20 44 44 H 1.08999 * 109.42471 * 169.62375 * 22 21 20 45 45 H 1.09002 * 109.67967 * 181.48519 * 23 22 21 46 46 H 1.09008 * 109.67849 * 301.98999 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 7 1.6524 0.0354 -2.4423 6 6 2.0011 -0.4208 -3.6856 7 1 2.5615 -1.3384 -3.7865 8 6 1.6342 0.2964 -4.8161 9 7 1.9689 -0.1423 -6.0110 10 14 0.6643 1.8833 -4.6416 11 1 1.6039 3.0273 -4.5247 12 1 -0.1975 2.0706 -5.8362 13 1 -0.1843 1.8135 -3.4250 14 6 2.0400 -0.7212 1.2492 15 7 1.6524 0.0355 2.4424 16 6 1.9956 -0.4135 3.6659 17 8 2.6257 -1.4436 3.7793 18 6 1.5974 0.3651 4.8932 19 7 2.0856 -0.3255 6.0895 20 6 3.4548 -0.1121 6.5810 21 6 3.4061 0.3875 8.0237 22 6 2.8082 -0.6756 8.9422 23 6 1.3100 -0.8256 8.6552 24 16 1.1051 -1.3697 6.9364 25 8 -0.2067 -1.0833 6.4714 26 8 1.6938 -2.6484 6.7422 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 3.1264 -0.7993 -1.2056 31 1 1.6055 -1.7198 -1.2951 32 1 1.1488 0.8594 -2.3518 33 1 1.7123 0.3586 -6.8010 34 1 3.1264 -0.7993 1.2056 35 1 1.6054 -1.7197 1.2951 36 1 1.1482 0.8591 2.3517 37 1 2.0327 1.3634 4.8473 38 1 0.5111 0.4441 4.9368 39 1 4.0060 -1.0516 6.5403 40 1 3.9536 0.6291 5.9566 41 1 4.4171 0.6225 8.3567 42 1 2.7945 1.2884 8.0714 43 1 3.3079 -1.6284 8.7673 44 1 2.9502 -0.3783 9.9812 45 1 0.8794 -1.5659 9.3296 46 1 0.8114 0.1334 8.7963 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568182880.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:59 Heat of formation + Delta-G solvation = -93.946907 kcal Electronic energy + Delta-G solvation = -26980.766965 eV Core-core repulsion = 23032.994817 eV Total energy + Delta-G solvation = -3947.772148 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -39.91542 -38.03406 -37.39555 -36.87335 -36.22745 -34.60302 -34.39053 -32.52200 -30.65231 -30.00798 -27.91094 -26.45023 -25.38193 -24.52406 -22.05223 -21.86184 -20.78757 -20.13828 -19.13343 -17.91928 -17.72604 -17.36632 -17.05200 -16.36691 -15.90384 -15.78601 -15.44868 -14.79006 -14.62058 -14.47248 -14.41881 -14.40727 -13.88418 -13.67806 -13.20328 -13.09411 -12.85972 -12.57729 -12.48183 -12.41493 -12.35264 -12.23634 -12.19742 -11.98415 -11.61859 -11.50424 -11.42813 -11.03181 -10.90828 -10.74777 -10.60514 -10.59812 -10.33406 -10.10863 -9.58035 -9.25939 -9.07510 -8.89552 -7.22573 -5.75960 -3.11564 -0.18734 2.08822 2.52945 3.08014 3.36048 3.38173 3.38738 3.44561 3.66439 3.81201 4.08221 4.20071 4.41724 4.52960 4.58909 4.62586 4.70793 4.84245 4.90360 4.94793 5.03112 5.11717 5.17947 5.22609 5.26004 5.31308 5.50006 5.54797 5.60246 5.68315 5.75930 5.89316 5.91540 6.00767 6.11647 6.25970 6.41521 6.48343 6.67000 6.76908 7.41349 8.00693 8.14029 8.42977 9.21923 9.93933 10.13733 11.42524 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.032082 B = 0.002047 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.564587 B =13674.644147 C =13727.993979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 H 0.076 0.924 4 C 0.164 3.836 5 N -0.754 5.754 6 C -0.243 4.243 7 H 0.090 0.910 8 C 0.002 3.998 9 N -0.934 5.934 10 Si 0.886 3.114 11 H -0.285 1.285 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.127 3.873 15 N -0.726 5.726 16 C 0.482 3.518 17 O -0.523 6.523 18 C 0.106 3.894 19 N -0.978 5.978 20 C 0.116 3.884 21 C -0.156 4.156 22 C -0.110 4.110 23 C -0.623 4.623 24 S 2.603 3.397 25 O -0.959 6.959 26 O -0.937 6.937 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.030 0.970 31 H 0.031 0.969 32 H 0.361 0.639 33 H 0.259 0.741 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.400 0.600 37 H 0.110 0.890 38 H 0.122 0.878 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.134 0.866 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.122 5.502 36.087 36.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.133 4.133 3 H 0.094 0.906 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.373 4.373 7 H 0.108 0.892 8 C -0.193 4.193 9 N -0.582 5.582 10 Si 0.716 3.284 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.003 3.997 15 N -0.379 5.379 16 C 0.265 3.735 17 O -0.398 6.398 18 C -0.023 4.023 19 N -0.815 5.815 20 C -0.009 4.009 21 C -0.195 4.195 22 C -0.149 4.149 23 C -0.752 4.752 24 S 2.696 3.304 25 O -0.950 6.950 26 O -0.926 6.926 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.194 0.806 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.234 0.766 37 H 0.128 0.872 38 H 0.140 0.860 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.152 0.848 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.086 3.884 35.618 35.829 hybrid contribution -0.743 2.033 0.337 2.191 sum -0.830 5.917 35.955 36.448 Atomic orbital electron populations 1.21827 0.94733 1.02367 1.01264 1.21603 0.96664 1.00484 0.94572 0.90589 1.20558 0.97199 0.94277 0.84309 1.42687 1.67693 1.27283 1.02359 1.19072 1.29328 1.07123 0.81762 0.89179 1.24686 1.00830 0.98699 0.95113 1.69703 1.51372 1.40233 0.96915 0.86529 0.80213 0.84796 0.76838 1.21138 1.21746 1.20376 1.21400 1.00269 0.95390 0.82661 1.46054 1.57904 1.27998 1.05938 1.21313 0.80361 0.86659 0.85125 1.90773 1.38829 1.23746 1.86429 1.21190 1.02395 0.96208 0.82543 1.57124 1.23986 1.63978 1.36462 1.21543 0.82666 1.03104 0.93590 1.22140 1.03557 0.99180 0.94638 1.21323 0.90227 1.01071 1.02262 1.30538 1.05904 1.13280 1.25494 1.05375 0.73591 0.74467 0.76947 1.93583 1.37499 1.84953 1.78915 1.93649 1.77317 1.38048 1.83627 0.91805 0.92350 0.93546 0.95231 0.95134 0.80643 0.93073 0.91139 0.91147 0.76562 0.87181 0.86029 0.90002 0.89038 0.88824 0.90336 0.89706 0.89437 0.84809 0.84667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.94 37.16 0.33 -1.65 16 2 C -0.11 -1.63 2.46 -90.62 -0.22 -1.85 16 3 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 4 C 0.16 3.13 5.65 -4.04 -0.02 3.10 16 5 N -0.75 -17.76 5.13 -59.91 -0.31 -18.07 16 6 C -0.24 -6.93 10.47 -15.06 -0.16 -7.09 16 7 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 8 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 9 N -0.93 -29.55 13.97 55.49 0.78 -28.77 16 10 Si 0.89 22.00 27.74 -169.99 -4.71 17.28 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 13 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 14 C 0.13 1.67 5.06 -4.04 -0.02 1.65 16 15 N -0.73 -7.74 5.28 -60.29 -0.32 -8.05 16 16 C 0.48 5.72 7.90 -10.99 -0.09 5.64 16 17 O -0.52 -8.59 16.43 5.56 0.09 -8.49 16 18 C 0.11 0.81 6.14 -5.19 -0.03 0.77 16 19 N -0.98 -7.85 2.47 -115.40 -0.29 -8.14 16 20 C 0.12 0.67 6.36 -3.88 -0.02 0.64 16 21 C -0.16 -0.46 5.80 -27.02 -0.16 -0.62 16 22 C -0.11 -0.39 5.79 -26.75 -0.15 -0.55 16 23 C -0.62 -2.69 6.56 37.30 0.24 -2.45 16 24 S 2.60 24.23 5.71 -107.50 -0.61 23.61 16 25 O -0.96 -11.40 16.50 -57.50 -0.95 -12.35 16 26 O -0.94 -12.92 18.10 -57.50 -1.04 -13.96 16 27 H 0.06 1.00 7.18 -51.93 -0.37 0.63 16 28 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 29 H 0.05 0.50 7.18 -51.93 -0.37 0.13 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.36 8.17 4.71 -40.82 -0.19 7.98 16 33 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.40 3.08 7.65 -40.82 -0.31 2.77 16 37 H 0.11 0.42 8.07 -51.93 -0.42 0.00 16 38 H 0.12 0.83 6.87 -51.93 -0.36 0.47 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.42 7.92 -51.93 -0.41 0.01 16 41 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 42 H 0.08 0.16 8.11 -51.93 -0.42 -0.26 16 43 H 0.08 0.35 8.13 -51.92 -0.42 -0.07 16 44 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.13 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.13 0.34 8.14 -51.92 -0.42 -0.09 16 LS Contribution 380.46 15.07 5.73 5.73 Total: -1.00 -40.18 380.46 -9.55 -49.73 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.52 Total: 3.89 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -0.40 Total: -2.42 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: -0.14 Total: -63.03 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -1.90 Total: -34.81 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.28 kcal Atomic # 16 Polarization: 24.23 SS G_CDS: -0.61 Total: 23.61 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -40.18 -9.55 -49.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568182880.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.214 kcal (2) G-P(sol) polarization free energy of solvation -40.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds