Wall clock time and date at job start Tue Mar 31 2020 18:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 5 5 N 1.46501 * 109.47260 * 64.99377 * 4 2 1 6 6 C 1.36946 * 119.99989 * 180.02562 * 5 4 2 7 7 H 1.07997 * 119.99902 * 0.02562 * 6 5 4 8 8 C 1.38812 * 119.99987 * 180.02562 * 6 5 4 9 9 N 1.31617 * 119.99851 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00025 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.46899 * 90.00087 * 10 8 6 12 12 H 1.48493 * 109.47272 * 210.00310 * 10 8 6 13 13 H 1.48496 * 109.47386 * 330.00871 * 10 8 6 14 14 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 15 15 N 1.46505 * 109.47212 * 295.00240 * 14 2 1 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 2 17 17 O 1.21280 * 120.00597 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99622 * 179.97438 * 16 15 14 19 19 N 1.46504 * 109.47396 * 180.02562 * 18 16 15 20 20 C 1.47024 * 120.99310 * 84.99602 * 19 18 16 21 21 C 1.52754 * 109.48286 * 122.53529 * 20 19 18 22 22 C 1.52684 * 110.66564 * 64.31856 * 21 20 19 23 23 C 1.53277 * 109.77047 * 289.71924 * 22 21 20 24 24 S 1.66405 * 120.99660 * 264.72587 * 19 18 16 25 25 O 1.42097 * 104.53586 * 344.38487 * 24 19 18 26 26 O 1.42105 * 104.53535 * 112.78680 * 24 19 18 27 27 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 28 28 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 30 30 H 1.09001 * 109.47698 * 184.99641 * 4 2 1 31 31 H 1.09009 * 109.47010 * 304.99646 * 4 2 1 32 32 H 0.96994 * 120.00443 * 0.02562 * 5 4 2 33 33 H 0.96996 * 119.99610 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.47153 * 175.00232 * 14 2 1 35 35 H 1.09001 * 109.46832 * 55.00423 * 14 2 1 36 36 H 0.96996 * 119.99606 * 0.02562 * 15 14 2 37 37 H 1.09001 * 109.47380 * 300.00190 * 18 16 15 38 38 H 1.09002 * 109.47060 * 60.00278 * 18 16 15 39 39 H 1.09000 * 109.47541 * 242.54432 * 20 19 18 40 40 H 1.09004 * 109.47084 * 2.53831 * 20 19 18 41 41 H 1.09007 * 109.23668 * 184.62387 * 21 20 19 42 42 H 1.08991 * 109.24207 * 304.01204 * 21 20 19 43 43 H 1.09009 * 109.42273 * 49.80938 * 22 21 20 44 44 H 1.08999 * 109.42471 * 169.62375 * 22 21 20 45 45 H 1.09002 * 109.67967 * 181.48519 * 23 22 21 46 46 H 1.09008 * 109.67849 * 301.98999 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 7 1.6524 0.0354 -2.4423 6 6 2.0011 -0.4208 -3.6856 7 1 2.5615 -1.3384 -3.7865 8 6 1.6342 0.2964 -4.8161 9 7 1.9689 -0.1423 -6.0110 10 14 0.6643 1.8833 -4.6416 11 1 1.6039 3.0273 -4.5247 12 1 -0.1975 2.0706 -5.8362 13 1 -0.1843 1.8135 -3.4250 14 6 2.0400 -0.7212 1.2492 15 7 1.6524 0.0355 2.4424 16 6 1.9956 -0.4135 3.6659 17 8 2.6257 -1.4436 3.7793 18 6 1.5974 0.3651 4.8932 19 7 2.0856 -0.3255 6.0895 20 6 3.4548 -0.1121 6.5810 21 6 3.4061 0.3875 8.0237 22 6 2.8082 -0.6756 8.9422 23 6 1.3100 -0.8256 8.6552 24 16 1.1051 -1.3697 6.9364 25 8 -0.2067 -1.0833 6.4714 26 8 1.6938 -2.6484 6.7422 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 3.1264 -0.7993 -1.2056 31 1 1.6055 -1.7198 -1.2951 32 1 1.1488 0.8594 -2.3518 33 1 1.7123 0.3586 -6.8010 34 1 3.1264 -0.7993 1.2056 35 1 1.6054 -1.7197 1.2951 36 1 1.1482 0.8591 2.3517 37 1 2.0327 1.3634 4.8473 38 1 0.5111 0.4441 4.9368 39 1 4.0060 -1.0516 6.5403 40 1 3.9536 0.6291 5.9566 41 1 4.4171 0.6225 8.3567 42 1 2.7945 1.2884 8.0714 43 1 3.3079 -1.6284 8.7673 44 1 2.9502 -0.3783 9.9812 45 1 0.8794 -1.5659 9.3296 46 1 0.8114 0.1334 8.7963 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568182880.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:58 Heat of formation + Delta-G solvation = -127.683270 kcal Electronic energy + Delta-G solvation = -26982.229883 eV Core-core repulsion = 23032.994817 eV Total energy + Delta-G solvation = -3949.235066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.85617 -38.64847 -38.35668 -37.88144 -37.02965 -36.04025 -35.01082 -34.15886 -32.44556 -30.53401 -28.62703 -27.79455 -26.59312 -25.14940 -23.87565 -22.20995 -21.77024 -21.45628 -19.90929 -19.54221 -18.55532 -18.14477 -17.87201 -17.21140 -16.81154 -16.61791 -16.44716 -16.17005 -15.74329 -15.54198 -15.23017 -14.95791 -14.92764 -14.79955 -14.53545 -14.23403 -13.93252 -13.68848 -13.50299 -13.31959 -13.21792 -13.19272 -13.14595 -12.87055 -12.71154 -12.52200 -12.18876 -12.11609 -12.01148 -11.96538 -11.87781 -11.75880 -11.69543 -11.37059 -11.17114 -10.98848 -10.09196 -9.92428 -9.31083 -8.03031 -5.37571 -0.79266 1.37542 1.43126 1.49196 1.50518 1.63240 2.21337 2.48975 2.78124 3.18792 3.27786 3.44120 3.55029 3.75382 3.77357 3.81183 3.92707 4.02836 4.10858 4.13905 4.21890 4.38652 4.46214 4.52124 4.57410 4.64886 4.68720 4.77518 4.87131 4.91560 4.97917 5.01791 5.04228 5.08580 5.16856 5.28008 5.35861 5.38534 5.47899 5.53744 5.74626 6.20391 6.58210 7.07283 7.27880 7.81673 8.03570 9.18607 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.032082 B = 0.002047 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.564587 B =13674.644147 C =13727.993979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.095 0.905 4 C 0.158 3.842 5 N -0.753 5.753 6 C -0.239 4.239 7 H 0.051 0.949 8 C -0.069 4.069 9 N -0.985 5.985 10 Si 0.962 3.038 11 H -0.275 1.275 12 H -0.297 1.297 13 H -0.246 1.246 14 C 0.136 3.864 15 N -0.713 5.713 16 C 0.474 3.526 17 O -0.578 6.578 18 C 0.107 3.893 19 N -0.980 5.980 20 C 0.109 3.891 21 C -0.149 4.149 22 C -0.118 4.118 23 C -0.586 4.586 24 S 2.582 3.418 25 O -0.995 6.995 26 O -1.003 7.003 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.024 0.976 31 H 0.019 0.981 32 H 0.369 0.631 33 H 0.258 0.742 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.418 0.582 37 H 0.159 0.841 38 H 0.133 0.867 39 H 0.053 0.947 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.101 0.899 43 H 0.071 0.929 44 H 0.117 0.883 45 H 0.152 0.848 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.139 9.476 39.846 40.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 H 0.113 0.887 4 C 0.031 3.969 5 N -0.399 5.399 6 C -0.370 4.370 7 H 0.069 0.931 8 C -0.260 4.260 9 N -0.636 5.636 10 Si 0.788 3.212 11 H -0.200 1.200 12 H -0.223 1.223 13 H -0.170 1.170 14 C 0.010 3.990 15 N -0.367 5.367 16 C 0.260 3.740 17 O -0.457 6.457 18 C -0.022 4.022 19 N -0.818 5.818 20 C -0.016 4.016 21 C -0.187 4.187 22 C -0.157 4.157 23 C -0.720 4.720 24 S 2.682 3.318 25 O -0.986 6.986 26 O -0.993 6.993 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.042 0.958 31 H 0.037 0.963 32 H 0.203 0.797 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.256 0.744 37 H 0.176 0.824 38 H 0.151 0.849 39 H 0.072 0.928 40 H 0.124 0.876 41 H 0.131 0.869 42 H 0.119 0.881 43 H 0.089 0.911 44 H 0.135 0.865 45 H 0.170 0.830 46 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.127 7.865 39.386 40.179 hybrid contribution -0.327 0.690 -0.770 1.084 sum -1.454 8.556 38.616 39.579 Atomic orbital electron populations 1.21823 0.93793 1.02098 1.02319 1.21387 0.97223 1.00638 0.92229 0.88716 1.20705 0.96939 0.94095 0.85120 1.42606 1.67647 1.27846 1.01807 1.19027 1.28193 1.05706 0.84102 0.93127 1.25625 1.02663 1.03203 0.94495 1.69907 1.53371 1.42321 0.97978 0.85315 0.78768 0.79385 0.77736 1.20041 1.22341 1.16988 1.21088 0.99530 0.94880 0.83452 1.45893 1.57613 1.28275 1.04901 1.22285 0.79151 0.86197 0.86406 1.90760 1.41425 1.26272 1.87207 1.21450 1.03372 0.97256 0.80092 1.57042 1.24769 1.63290 1.36650 1.21735 0.81411 1.02335 0.96115 1.22133 1.05214 0.99415 0.91981 1.21492 0.89140 1.00973 1.04086 1.30280 1.07407 1.15102 1.19258 1.05642 0.72848 0.73824 0.79519 1.93523 1.39043 1.85124 1.80888 1.93572 1.77958 1.42014 1.85708 0.93238 0.93401 0.89885 0.95800 0.96274 0.79662 0.93291 0.92118 0.92955 0.74373 0.82366 0.84949 0.92823 0.87642 0.86917 0.88097 0.91071 0.86489 0.82963 0.81410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 8.94 71.98 0.64 -2.94 16 2 C -0.10 -2.57 2.46 -10.80 -0.03 -2.60 16 3 H 0.09 2.26 8.14 -2.38 -0.02 2.25 16 4 C 0.16 6.05 5.65 86.38 0.49 6.54 16 5 N -0.75 -35.09 5.13 -343.44 -1.76 -36.85 16 6 C -0.24 -13.96 10.47 84.03 0.88 -13.08 16 7 H 0.05 3.28 8.06 -2.91 -0.02 3.25 16 8 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 9 N -0.99 -64.11 13.97 21.65 0.30 -63.81 16 10 Si 0.96 44.95 27.74 68.60 1.90 46.85 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 13 H -0.25 -10.08 6.52 99.48 0.65 -9.43 16 14 C 0.14 3.51 5.06 86.38 0.44 3.94 16 15 N -0.71 -13.87 5.28 -463.06 -2.45 -16.32 16 16 C 0.47 10.85 7.90 87.66 0.69 11.55 16 17 O -0.58 -19.67 16.43 -3.03 -0.05 -19.72 16 18 C 0.11 1.37 6.14 85.63 0.53 1.90 16 19 N -0.98 -14.37 2.47 -519.02 -1.28 -15.65 16 20 C 0.11 1.08 6.36 86.20 0.55 1.63 16 21 C -0.15 -0.33 5.80 30.41 0.18 -0.15 16 22 C -0.12 -0.44 5.79 30.58 0.18 -0.26 16 23 C -0.59 -3.14 6.56 72.08 0.47 -2.67 16 24 S 2.58 47.29 5.71 -56.49 -0.32 46.96 16 25 O -1.00 -23.44 16.50 -127.69 -2.11 -25.54 16 26 O -1.00 -29.75 18.10 -127.69 -2.31 -32.06 16 27 H 0.05 1.40 7.18 -2.39 -0.02 1.39 16 28 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.08 1.47 7.18 -2.39 -0.02 1.45 16 30 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.37 15.89 4.71 -92.71 -0.44 15.45 16 33 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.42 4.95 7.65 -92.71 -0.71 4.24 16 37 H 0.16 0.48 8.07 -2.39 -0.02 0.46 16 38 H 0.13 1.47 6.87 -2.39 -0.02 1.45 16 39 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.11 0.71 7.92 -2.38 -0.02 0.69 16 41 H 0.11 -0.12 8.14 -2.38 -0.02 -0.14 16 42 H 0.10 -0.15 8.11 -2.39 -0.02 -0.17 16 43 H 0.07 0.50 8.13 -2.38 -0.02 0.48 16 44 H 0.12 -0.11 8.14 -2.39 -0.02 -0.13 16 45 H 0.15 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.17 -0.06 8.14 -2.38 -0.02 -0.08 16 Total: -1.00 -94.48 380.46 -2.82 -97.30 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -0.22 Total: 18.61 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 5.48 Total: 0.22 kcal Atomic # 7 Polarization: -127.43 SS G_CDS: -5.19 Total: -132.63 kcal Atomic # 8 Polarization: -72.85 SS G_CDS: -4.47 Total: -77.32 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.90 Total: 46.85 kcal Atomic # 16 Polarization: 47.29 SS G_CDS: -0.32 Total: 46.96 kcal Total: -94.48 -2.82 -97.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568182880.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.384 kcal (2) G-P(sol) polarization free energy of solvation -94.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds