Wall clock time and date at job start Tue Mar 31 2020 17:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.49944 * 2 1 4 4 C 1.53192 * 109.49868 * 120.09329 * 2 1 3 5 5 N 1.46924 * 108.77319 * 65.31753 * 4 2 1 6 6 C 1.34778 * 120.63292 * 233.58820 * 5 4 2 7 7 O 1.21579 * 119.99667 * 354.97395 * 6 5 4 8 8 N 1.34777 * 120.00201 * 174.96966 * 6 5 4 9 9 C 1.39243 * 119.99929 * 185.39242 * 8 6 5 10 10 C 1.39682 * 119.57501 * 185.40458 * 9 8 6 11 11 C 1.38652 * 119.49515 * 179.70562 * 10 9 8 12 12 C 1.38350 * 118.67071 * 0.55761 * 11 10 9 13 13 C 1.40577 * 119.13002 * 359.72759 * 12 11 10 14 14 C 1.41337 * 119.78755 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00008 * 359.97104 * 14 13 12 16 16 C 1.40023 * 120.00046 * 179.97438 * 14 13 12 17 17 N 1.30747 * 120.00090 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00116 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46992 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47112 * 119.99094 * 18 16 14 21 21 H 1.48493 * 109.47392 * 239.99522 * 18 16 14 22 22 N 1.31910 * 119.57899 * 5.67931 * 9 8 6 23 23 C 1.46932 * 118.74099 * 53.60822 * 5 4 2 24 24 C 1.53185 * 108.77278 * 306.39108 * 23 5 4 25 25 C 1.53042 * 109.49900 * 239.93516 * 2 1 3 26 26 H 1.08999 * 109.45738 * 181.39800 * 25 2 1 27 27 C 1.50692 * 109.46032 * 61.41956 * 25 2 1 28 28 O 1.20827 * 120.00428 * 0.02562 * 27 25 2 29 29 O 1.34232 * 120.00226 * 180.02562 * 27 25 2 30 30 H 1.09000 * 109.47108 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47043 * 60.06973 * 1 2 3 32 32 H 1.09000 * 109.47465 * 300.06991 * 1 2 3 33 33 H 1.08997 * 109.58796 * 185.10432 * 4 2 1 34 34 H 1.09000 * 109.58586 * 305.53218 * 4 2 1 35 35 H 0.96992 * 120.00027 * 5.39570 * 8 6 5 36 36 H 1.08000 * 120.25570 * 0.02562 * 10 9 8 37 37 H 1.08001 * 120.66298 * 180.26089 * 11 10 9 38 38 H 1.07996 * 120.43970 * 179.74912 * 12 11 10 39 39 H 0.96998 * 120.00014 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.58390 * 186.60260 * 23 5 4 41 41 H 1.09001 * 109.58397 * 66.17825 * 23 5 4 42 42 H 1.08996 * 109.50101 * 294.68250 * 24 23 5 43 43 H 1.09006 * 109.52148 * 174.59844 * 24 23 5 44 44 H 0.96693 * 117.00139 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7241 1.2494 5 7 1.6516 -2.1384 1.1690 6 6 0.9748 -2.7226 2.1776 7 8 0.7608 -2.1061 3.2034 8 7 0.5351 -3.9901 2.0489 9 6 -0.2595 -4.5556 3.0427 10 6 -0.6162 -5.9034 2.9565 11 6 -1.4024 -6.4664 3.9502 12 6 -1.8218 -5.6661 4.9979 13 6 -1.4343 -4.3151 5.0248 14 6 -1.8544 -3.4852 6.0889 15 1 -2.4714 -3.8893 6.8777 16 6 -1.4706 -2.1389 6.1203 17 7 -0.7232 -1.6497 5.1655 18 14 -2.0264 -1.0418 7.5263 19 1 -2.8578 -1.8306 8.4707 20 1 -0.8371 -0.5097 8.2389 21 1 -2.8265 0.0869 6.9871 22 7 -0.6703 -3.8104 4.0506 23 6 2.0140 -2.9040 -0.0315 24 6 1.5030 -2.1555 -1.2665 25 6 2.0408 -0.7227 -1.2486 26 1 3.1305 -0.7441 -1.2354 27 6 1.5677 0.0063 -2.4796 28 8 0.8918 1.0019 -2.3698 29 8 1.8970 -0.4502 -3.6981 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5128 -0.8907 32 1 -0.3634 0.5149 0.8893 33 1 3.1275 -0.6466 1.2979 34 1 1.6007 -0.2736 2.1388 35 1 0.7723 -4.5084 1.2641 36 1 -0.2779 -6.5037 2.1249 37 1 -1.6859 -7.5075 3.9046 38 1 -2.4384 -6.0741 5.7851 39 1 -0.4571 -0.7172 5.1875 40 1 1.5554 -3.8918 0.0128 41 1 3.0980 -3.0042 -0.0875 42 1 0.4133 -2.1351 -1.2546 43 1 1.8477 -2.6621 -2.1680 44 1 1.5700 0.0508 -4.4578 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607473596.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:58 Heat of formation + Delta-G solvation = -49.663394 kcal Electronic energy + Delta-G solvation = -29613.300896 eV Core-core repulsion = 25532.005075 eV Total energy + Delta-G solvation = -4081.295822 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.05289 -39.80112 -38.27853 -37.03307 -36.28047 -34.18475 -33.33980 -32.82581 -31.72493 -30.25788 -28.96755 -27.45755 -26.16609 -25.29338 -23.11589 -22.57386 -21.73402 -21.21456 -19.68585 -18.57431 -18.28356 -18.20231 -17.14821 -16.64693 -16.19968 -15.84051 -15.28847 -14.93086 -14.64398 -14.48839 -14.32316 -13.92115 -13.78805 -13.56536 -13.27636 -13.04292 -12.90771 -12.79551 -12.10991 -12.00981 -11.93136 -11.80631 -11.59435 -11.55354 -11.15243 -11.06794 -10.90849 -10.68678 -10.61020 -10.60387 -10.42878 -10.32684 -9.87189 -9.67305 -9.08090 -8.99563 -8.18349 -7.92045 -7.20894 -6.90575 -6.08766 -4.35811 1.97679 2.78042 2.85981 3.10576 3.16225 3.20678 3.23913 3.29910 4.09984 4.16596 4.27917 4.35614 4.52771 4.72020 4.94289 4.98379 5.12076 5.15347 5.24650 5.37251 5.54491 5.57282 5.64267 5.79812 5.93363 6.01249 6.08931 6.10643 6.14144 6.20439 6.32641 6.48458 6.55094 6.60116 6.81361 6.87861 6.95002 7.24578 7.36402 7.64366 7.67205 7.74349 7.84383 8.19433 8.30789 8.63579 8.82346 9.09516 9.57365 10.30029 10.52645 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014610 B = 0.003672 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.972511 B = 7622.841842 C = 9010.454908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.089 4.089 3 H 0.086 0.914 4 C 0.140 3.860 5 N -0.639 5.639 6 C 0.673 3.327 7 O -0.460 6.460 8 N -0.674 5.674 9 C 0.387 3.613 10 C -0.359 4.359 11 C -0.036 4.036 12 C -0.307 4.307 13 C 0.272 3.728 14 C -0.425 4.425 15 H 0.082 0.918 16 C 0.058 3.942 17 N -0.650 5.650 18 Si 0.894 3.106 19 H -0.263 1.263 20 H -0.275 1.275 21 H -0.276 1.276 22 N -0.472 5.472 23 C 0.116 3.884 24 C -0.129 4.129 25 C -0.072 4.072 26 H 0.109 0.891 27 C 0.482 3.518 28 O -0.507 6.507 29 O -0.518 6.518 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.393 0.607 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.271 0.729 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.093 2.288 -15.823 17.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.109 4.109 3 H 0.104 0.896 4 C 0.017 3.983 5 N -0.382 5.382 6 C 0.372 3.628 7 O -0.324 6.324 8 N -0.324 5.324 9 C 0.147 3.853 10 C -0.385 4.385 11 C -0.060 4.060 12 C -0.330 4.330 13 C 0.147 3.853 14 C -0.456 4.456 15 H 0.100 0.900 16 C -0.172 4.172 17 N -0.269 5.269 18 Si 0.719 3.281 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.201 1.201 22 N -0.190 5.190 23 C -0.008 4.008 24 C -0.168 4.168 25 C -0.091 4.091 26 H 0.127 0.873 27 C 0.324 3.676 28 O -0.395 6.395 29 O -0.330 6.330 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.229 0.771 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 8.217 3.959 -14.631 17.241 hybrid contribution -0.509 -0.415 -0.668 0.937 sum 7.707 3.544 -15.300 17.494 Atomic orbital electron populations 1.21988 0.93750 1.02377 1.02882 1.21439 0.97961 0.99130 0.92367 0.89579 1.21364 0.98553 0.80225 0.98200 1.47473 1.61507 1.11045 1.18155 1.16278 0.80016 0.82352 0.84118 1.91347 1.55285 1.61180 1.24570 1.42759 1.53291 1.13372 1.23012 1.18341 0.89851 0.88041 0.89054 1.20427 1.17739 0.94772 1.05537 1.20538 0.94962 0.97071 0.93418 1.21621 1.12456 0.96602 1.02300 1.18383 0.87592 0.88919 0.90442 1.19606 1.26716 0.93693 1.05544 0.89985 1.26170 0.95197 0.99019 0.96779 1.70344 1.17767 1.13382 1.25371 0.86489 0.79217 0.80442 0.82001 1.18653 1.20083 1.20124 1.68655 1.15438 1.33268 1.01671 1.21485 0.99914 0.94881 0.84529 1.22000 1.02453 0.93013 0.99321 1.21093 1.02490 0.96070 0.89440 0.87306 1.23624 0.76583 0.82766 0.84634 1.90692 1.35842 1.25910 1.87018 1.84545 1.73071 1.58426 1.16977 0.92505 0.91336 0.92165 0.92231 0.87884 0.77114 0.89255 0.88666 0.88618 0.91750 0.90225 0.91434 0.90329 0.89728 0.73420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.40 37.16 0.31 -1.84 16 2 C -0.09 -1.03 2.36 -90.50 -0.21 -1.25 16 3 H 0.09 0.95 8.07 -51.93 -0.42 0.53 16 4 C 0.14 1.85 5.81 -3.71 -0.02 1.83 16 5 N -0.64 -9.30 2.41 -178.50 -0.43 -9.73 16 6 C 0.67 13.61 8.25 -86.92 -0.72 12.90 16 7 O -0.46 -11.60 11.69 5.30 0.06 -11.54 16 8 N -0.67 -13.33 5.30 -15.78 -0.08 -13.42 16 9 C 0.39 9.47 7.41 -154.99 -1.15 8.32 16 10 C -0.36 -8.07 9.96 -38.89 -0.39 -8.46 16 11 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 12 C -0.31 -7.78 9.83 -38.66 -0.38 -8.16 16 13 C 0.27 7.69 6.55 -85.00 -0.56 7.14 16 14 C -0.43 -11.80 9.14 -37.74 -0.34 -12.14 16 15 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 16 C 0.06 1.53 5.50 -17.34 -0.10 1.44 16 17 N -0.65 -18.12 9.09 55.55 0.51 -17.61 16 18 Si 0.89 19.46 29.56 -169.99 -5.02 14.44 16 19 H -0.26 -5.60 7.11 56.52 0.40 -5.19 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 N -0.47 -13.32 5.74 -10.26 -0.06 -13.38 16 23 C 0.12 1.18 6.43 -3.71 -0.02 1.15 16 24 C -0.13 -1.16 4.96 -26.61 -0.13 -1.29 16 25 C -0.07 -0.66 2.37 -91.73 -0.22 -0.88 16 26 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 27 C 0.48 4.78 7.34 36.00 0.26 5.05 16 28 O -0.51 -6.60 14.51 -18.75 -0.27 -6.87 16 29 O -0.52 -3.76 13.30 -39.26 -0.52 -4.28 16 30 H 0.06 0.87 5.97 -51.93 -0.31 0.56 16 31 H 0.07 0.98 5.65 -51.93 -0.29 0.69 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 1.67 7.03 -51.93 -0.37 1.31 16 35 H 0.39 6.05 6.15 -40.82 -0.25 5.80 16 36 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 39 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 40 H 0.08 0.76 5.57 -51.93 -0.29 0.47 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.84 6.33 -51.93 -0.33 0.51 16 43 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 44 H 0.41 1.38 9.10 45.56 0.41 1.80 16 LS Contribution 352.21 15.07 5.31 5.31 Total: -1.00 -35.32 352.21 -9.35 -44.66 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -4.77 Total: 9.83 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -4.06 Total: 2.59 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.07 Total: -54.14 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.73 Total: -22.69 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.32 -9.35 -44.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607473596.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.003 kcal (2) G-P(sol) polarization free energy of solvation -35.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds