Wall clock time and date at job start Tue Mar 31 2020 17:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.49944 * 2 1 4 4 C 1.53192 * 109.49868 * 120.09329 * 2 1 3 5 5 N 1.46924 * 108.77319 * 65.31753 * 4 2 1 6 6 C 1.34778 * 120.63292 * 233.58820 * 5 4 2 7 7 O 1.21579 * 119.99667 * 354.97395 * 6 5 4 8 8 N 1.34777 * 120.00201 * 174.96966 * 6 5 4 9 9 C 1.39243 * 119.99929 * 185.39242 * 8 6 5 10 10 C 1.39682 * 119.57501 * 185.40458 * 9 8 6 11 11 C 1.38652 * 119.49515 * 179.70562 * 10 9 8 12 12 C 1.38350 * 118.67071 * 0.55761 * 11 10 9 13 13 C 1.40577 * 119.13002 * 359.72759 * 12 11 10 14 14 C 1.41337 * 119.78755 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00008 * 359.97104 * 14 13 12 16 16 C 1.40023 * 120.00046 * 179.97438 * 14 13 12 17 17 N 1.30747 * 120.00090 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00116 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46992 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47112 * 119.99094 * 18 16 14 21 21 H 1.48493 * 109.47392 * 239.99522 * 18 16 14 22 22 N 1.31910 * 119.57899 * 5.67931 * 9 8 6 23 23 C 1.46932 * 118.74099 * 53.60822 * 5 4 2 24 24 C 1.53185 * 108.77278 * 306.39108 * 23 5 4 25 25 C 1.53042 * 109.49900 * 239.93516 * 2 1 3 26 26 H 1.08999 * 109.45738 * 181.39800 * 25 2 1 27 27 C 1.50692 * 109.46032 * 61.41956 * 25 2 1 28 28 O 1.20827 * 120.00428 * 0.02562 * 27 25 2 29 29 O 1.34232 * 120.00226 * 180.02562 * 27 25 2 30 30 H 1.09000 * 109.47108 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47043 * 60.06973 * 1 2 3 32 32 H 1.09000 * 109.47465 * 300.06991 * 1 2 3 33 33 H 1.08997 * 109.58796 * 185.10432 * 4 2 1 34 34 H 1.09000 * 109.58586 * 305.53218 * 4 2 1 35 35 H 0.96992 * 120.00027 * 5.39570 * 8 6 5 36 36 H 1.08000 * 120.25570 * 0.02562 * 10 9 8 37 37 H 1.08001 * 120.66298 * 180.26089 * 11 10 9 38 38 H 1.07996 * 120.43970 * 179.74912 * 12 11 10 39 39 H 0.96998 * 120.00014 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.58390 * 186.60260 * 23 5 4 41 41 H 1.09001 * 109.58397 * 66.17825 * 23 5 4 42 42 H 1.08996 * 109.50101 * 294.68250 * 24 23 5 43 43 H 1.09006 * 109.52148 * 174.59844 * 24 23 5 44 44 H 0.96693 * 117.00139 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7241 1.2494 5 7 1.6516 -2.1384 1.1690 6 6 0.9748 -2.7226 2.1776 7 8 0.7608 -2.1061 3.2034 8 7 0.5351 -3.9901 2.0489 9 6 -0.2595 -4.5556 3.0427 10 6 -0.6162 -5.9034 2.9565 11 6 -1.4024 -6.4664 3.9502 12 6 -1.8218 -5.6661 4.9979 13 6 -1.4343 -4.3151 5.0248 14 6 -1.8544 -3.4852 6.0889 15 1 -2.4714 -3.8893 6.8777 16 6 -1.4706 -2.1389 6.1203 17 7 -0.7232 -1.6497 5.1655 18 14 -2.0264 -1.0418 7.5263 19 1 -2.8578 -1.8306 8.4707 20 1 -0.8371 -0.5097 8.2389 21 1 -2.8265 0.0869 6.9871 22 7 -0.6703 -3.8104 4.0506 23 6 2.0140 -2.9040 -0.0315 24 6 1.5030 -2.1555 -1.2665 25 6 2.0408 -0.7227 -1.2486 26 1 3.1305 -0.7441 -1.2354 27 6 1.5677 0.0063 -2.4796 28 8 0.8918 1.0019 -2.3698 29 8 1.8970 -0.4502 -3.6981 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5128 -0.8907 32 1 -0.3634 0.5149 0.8893 33 1 3.1275 -0.6466 1.2979 34 1 1.6007 -0.2736 2.1388 35 1 0.7723 -4.5084 1.2641 36 1 -0.2779 -6.5037 2.1249 37 1 -1.6859 -7.5075 3.9046 38 1 -2.4384 -6.0741 5.7851 39 1 -0.4571 -0.7172 5.1875 40 1 1.5554 -3.8918 0.0128 41 1 3.0980 -3.0042 -0.0875 42 1 0.4133 -2.1351 -1.2546 43 1 1.8477 -2.6621 -2.1680 44 1 1.5700 0.0508 -4.4578 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607473596.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:57 Heat of formation + Delta-G solvation = -72.836840 kcal Electronic energy + Delta-G solvation = -29614.305772 eV Core-core repulsion = 25532.005075 eV Total energy + Delta-G solvation = -4082.300698 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.98034 -41.09686 -39.82410 -38.37744 -37.06216 -35.94535 -34.97304 -34.21084 -32.69921 -32.17378 -30.79934 -28.44894 -27.68679 -26.89321 -24.03131 -23.92613 -23.16496 -22.83264 -21.06585 -19.99859 -19.48467 -18.98555 -18.72444 -17.93222 -17.47520 -16.70566 -16.55600 -16.42833 -16.25130 -15.95049 -15.67409 -15.49648 -15.09187 -14.63378 -14.54849 -14.43950 -14.35474 -13.87452 -13.69622 -13.62272 -12.96482 -12.88333 -12.85264 -12.71247 -12.66894 -12.51887 -12.43854 -12.27607 -12.03402 -11.72865 -11.59744 -11.53574 -11.47747 -11.25341 -10.86321 -10.71472 -9.86817 -9.41618 -9.09639 -8.73124 -8.01099 -6.39050 0.98396 1.23176 1.30610 1.39599 1.52342 1.54059 1.76133 2.13504 2.27328 2.60803 3.05323 3.05890 3.49306 3.65470 3.96580 3.98367 4.10700 4.18670 4.34568 4.36181 4.41601 4.57192 4.63113 4.66949 4.73665 4.79217 4.87592 4.89920 4.90845 4.99012 5.07932 5.10579 5.13188 5.15742 5.30930 5.35797 5.66810 5.70603 5.79254 5.87329 5.95632 6.04325 6.28620 6.43532 6.84547 7.04536 7.08708 7.19005 8.02954 8.41066 8.60013 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014610 B = 0.003672 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.972511 B = 7622.841842 C = 9010.454908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 H 0.093 0.907 4 C 0.141 3.859 5 N -0.630 5.630 6 C 0.664 3.336 7 O -0.518 6.518 8 N -0.662 5.662 9 C 0.365 3.635 10 C -0.346 4.346 11 C -0.033 4.033 12 C -0.332 4.332 13 C 0.238 3.762 14 C -0.467 4.467 15 H 0.084 0.916 16 C 0.012 3.988 17 N -0.685 5.685 18 Si 0.972 3.028 19 H -0.254 1.254 20 H -0.271 1.271 21 H -0.272 1.272 22 N -0.507 5.507 23 C 0.110 3.890 24 C -0.121 4.121 25 C -0.068 4.068 26 H 0.143 0.857 27 C 0.489 3.511 28 O -0.546 6.546 29 O -0.508 6.508 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.031 0.969 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.414 0.586 36 H 0.132 0.868 37 H 0.138 0.862 38 H 0.103 0.897 39 H 0.268 0.732 40 H 0.086 0.914 41 H 0.102 0.898 42 H 0.056 0.944 43 H 0.118 0.882 44 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.806 0.969 -18.326 20.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.100 4.100 3 H 0.112 0.888 4 C 0.018 3.982 5 N -0.371 5.371 6 C 0.364 3.636 7 O -0.386 6.386 8 N -0.315 5.315 9 C 0.125 3.875 10 C -0.371 4.371 11 C -0.057 4.057 12 C -0.355 4.355 13 C 0.112 3.888 14 C -0.498 4.498 15 H 0.102 0.898 16 C -0.214 4.214 17 N -0.304 5.304 18 Si 0.793 3.207 19 H -0.177 1.177 20 H -0.196 1.196 21 H -0.197 1.197 22 N -0.226 5.226 23 C -0.012 4.012 24 C -0.159 4.159 25 C -0.087 4.087 26 H 0.161 0.839 27 C 0.333 3.667 28 O -0.436 6.436 29 O -0.321 6.321 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.254 0.746 36 H 0.150 0.850 37 H 0.155 0.845 38 H 0.121 0.879 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.120 0.880 42 H 0.075 0.925 43 H 0.136 0.864 44 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 9.972 2.599 -17.251 20.095 hybrid contribution -0.977 -0.141 -0.123 0.995 sum 8.995 2.458 -17.374 19.718 Atomic orbital electron populations 1.21886 0.96162 1.00774 1.01337 1.21305 0.95699 0.99831 0.93176 0.88833 1.21414 0.99996 0.79407 0.97418 1.47400 1.59893 1.11602 1.18209 1.16574 0.80113 0.82226 0.84683 1.91331 1.57485 1.62365 1.27377 1.42602 1.52431 1.13678 1.22807 1.18857 0.90224 0.89144 0.89236 1.20918 1.15858 0.94190 1.06167 1.21020 0.93765 0.98785 0.92164 1.21801 1.13600 0.96150 1.03941 1.18867 0.88320 0.90488 0.91084 1.19904 1.28488 0.94947 1.06438 0.89774 1.27006 0.94946 1.00039 0.99415 1.70552 1.19180 1.13323 1.27371 0.85316 0.78738 0.78125 0.78495 1.17721 1.19649 1.19730 1.68622 1.16230 1.34989 1.02807 1.21862 1.02090 0.94607 0.82675 1.21950 1.01128 0.92899 0.99949 1.21069 1.04322 0.95527 0.87794 0.83899 1.23612 0.75640 0.82002 0.85479 1.90696 1.37620 1.27689 1.87603 1.84486 1.72547 1.58281 1.16787 0.94092 0.91437 0.95015 0.89077 0.91925 0.74601 0.84991 0.84470 0.87884 0.92163 0.89536 0.88014 0.92507 0.86415 0.71269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.26 8.40 71.98 0.60 -3.65 16 2 C -0.08 -1.80 2.36 -10.72 -0.03 -1.82 16 3 H 0.09 1.99 8.07 -2.39 -0.02 1.97 16 4 C 0.14 3.68 5.81 86.36 0.50 4.18 16 5 N -0.63 -17.78 2.41 -836.92 -2.02 -19.80 16 6 C 0.66 27.40 8.25 179.05 1.48 28.88 16 7 O -0.52 -27.59 11.69 -3.96 -0.05 -27.64 16 8 N -0.66 -25.89 5.30 -322.12 -1.71 -27.60 16 9 C 0.37 17.94 7.41 133.26 0.99 18.92 16 10 C -0.35 -14.81 9.96 22.72 0.23 -14.59 16 11 C -0.03 -1.45 10.15 22.40 0.23 -1.23 16 12 C -0.33 -17.06 9.83 22.87 0.22 -16.84 16 13 C 0.24 14.05 6.55 40.19 0.26 14.31 16 14 C -0.47 -27.25 9.14 23.47 0.21 -27.04 16 15 H 0.08 4.62 7.85 -2.91 -0.02 4.60 16 16 C 0.01 0.64 5.50 85.29 0.47 1.11 16 17 N -0.69 -40.59 9.09 21.84 0.20 -40.39 16 18 Si 0.97 41.99 29.56 68.60 2.03 44.01 16 19 H -0.25 -10.43 7.11 99.48 0.71 -9.73 16 20 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 N -0.51 -29.77 5.74 -186.36 -1.07 -30.84 16 23 C 0.11 1.85 6.43 86.36 0.56 2.40 16 24 C -0.12 -1.74 4.96 30.67 0.15 -1.59 16 25 C -0.07 -1.04 2.37 -11.51 -0.03 -1.07 16 26 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 27 C 0.49 8.38 7.34 71.23 0.52 8.90 16 28 O -0.55 -13.51 14.51 21.96 0.32 -13.19 16 29 O -0.51 -5.45 13.30 -51.43 -0.68 -6.13 16 30 H 0.04 1.31 5.97 -2.39 -0.01 1.29 16 31 H 0.07 1.99 5.65 -2.38 -0.01 1.98 16 32 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.06 2.18 7.03 -2.39 -0.02 2.17 16 35 H 0.41 11.83 6.15 -92.71 -0.57 11.26 16 36 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 37 H 0.14 4.78 8.06 -2.91 -0.02 4.76 16 38 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 39 H 0.27 15.00 8.29 -92.71 -0.77 14.23 16 40 H 0.09 1.34 5.57 -2.39 -0.01 1.33 16 41 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.06 1.11 6.33 -2.39 -0.02 1.09 16 43 H 0.12 1.02 8.08 -2.38 -0.02 1.00 16 44 H 0.43 1.46 9.10 -74.06 -0.67 0.79 16 Total: -1.00 -83.95 352.21 3.22 -80.73 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: -0.18 Total: 29.96 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 6.37 Total: 10.89 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -4.59 Total: -118.63 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: -0.41 Total: -46.96 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -83.95 3.22 -80.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607473596.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.891 kcal (2) G-P(sol) polarization free energy of solvation -83.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds