Wall clock time and date at job start Tue Mar 31 2020 18:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 C 1.53002 * 109.47408 * 164.99913 * 18 17 14 20 20 C 1.52999 * 109.46988 * 179.97438 * 19 18 17 21 21 H 1.09000 * 110.85861 * 57.33686 * 20 19 18 22 22 C 1.54632 * 110.97202 * 293.54255 * 20 19 18 23 23 C 1.51277 * 104.19647 * 217.08448 * 22 20 19 24 24 O 1.21283 * 124.94131 * 196.28892 * 23 22 20 25 25 N 1.34424 * 110.11471 * 16.25324 * 23 22 20 26 26 C 1.46500 * 124.34698 * 180.42448 * 25 23 22 27 27 C 1.46764 * 111.30056 * 0.41007 * 25 23 22 28 28 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 29 29 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 30 30 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 33 33 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 34 34 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 35 35 H 0.97000 * 120.00897 * 245.00185 * 17 14 12 36 36 H 1.09006 * 109.47312 * 284.99498 * 18 17 14 37 37 H 1.09004 * 109.47167 * 44.99686 * 18 17 14 38 38 H 1.08999 * 109.47181 * 299.99992 * 19 18 17 39 39 H 1.09004 * 109.47142 * 59.99757 * 19 18 17 40 40 H 1.09000 * 110.48546 * 335.76712 * 22 20 19 41 41 H 1.08997 * 110.48231 * 98.27315 * 22 20 19 42 42 H 1.09000 * 109.47083 * 359.97438 * 26 25 23 43 43 H 1.09000 * 109.47132 * 119.97896 * 26 25 23 44 44 H 1.08999 * 109.47100 * 239.97904 * 26 25 23 45 45 H 1.09008 * 110.23962 * 223.97831 * 27 25 23 46 46 H 1.09000 * 110.24516 * 101.98455 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 6 0.6085 0.8078 5.4378 20 6 -0.2376 -0.0739 6.3585 21 1 0.3444 -0.9167 6.7312 22 6 -1.5163 -0.5600 5.6375 23 6 -2.5788 -0.5422 6.7142 24 8 -3.6483 -1.1098 6.6441 25 7 -2.1647 0.1936 7.7601 26 6 -2.9476 0.4115 8.9791 27 6 -0.8274 0.7504 7.5242 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.7088 1.1611 -3.4845 32 1 2.4158 -2.7376 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6905 -2.3002 0.9847 35 1 1.9052 1.7752 3.4681 36 1 0.3187 -0.4565 3.7178 37 1 1.7669 -0.8422 4.6782 38 1 1.4406 1.2293 6.0017 39 1 -0.0075 1.6149 5.0412 40 1 -1.7809 0.1215 4.8290 41 1 -1.3766 -1.5704 5.2531 42 1 -3.9007 -0.1111 8.8970 43 1 -2.3964 0.0291 9.8382 44 1 -3.1284 1.4785 9.1090 45 1 -0.2099 0.6389 8.4155 46 1 -0.9005 1.8013 7.2442 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650029746.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:59 Heat of formation + Delta-G solvation = -112.575753 kcal Electronic energy + Delta-G solvation = -27664.414845 eV Core-core repulsion = 23715.834890 eV Total energy + Delta-G solvation = -3948.579955 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.74865 -37.37467 -36.67852 -36.19166 -35.75184 -35.24131 -33.44133 -32.58266 -29.61256 -29.10458 -27.85062 -26.22470 -25.59950 -25.13146 -23.23298 -21.11429 -20.71448 -19.86471 -18.76608 -17.31208 -17.22969 -16.85232 -16.58672 -16.41222 -15.78186 -15.69094 -15.13109 -15.02049 -14.35003 -14.06761 -13.84935 -13.75577 -13.47972 -13.20196 -13.01630 -12.80568 -12.76398 -12.63358 -12.41195 -12.01741 -11.96253 -11.74636 -11.53777 -11.39698 -11.35357 -11.26488 -11.20710 -11.01469 -10.96799 -10.80080 -10.48585 -10.28591 -10.05186 -10.02108 -9.36891 -9.24141 -9.08985 -8.45374 -7.98948 -6.07383 -4.13829 1.19018 2.32568 2.67764 3.30751 3.35041 3.37933 3.46518 3.98327 4.00634 4.11546 4.29346 4.40508 4.61415 4.82507 4.87445 4.90497 4.96681 5.01956 5.14626 5.19255 5.24161 5.25281 5.34333 5.37346 5.44907 5.55463 5.58718 5.78926 5.85563 6.04627 6.12233 6.14368 6.35646 6.61674 6.74896 6.75618 6.78681 7.00499 7.12060 7.47521 7.63150 7.78868 7.88371 8.03974 8.27557 8.88195 9.52001 10.98298 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.017683 B = 0.002888 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.095530 B = 9692.995511 C =10587.038953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.269 3.731 3 H 0.059 0.941 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.277 1.277 12 N -0.990 5.990 13 C 0.109 3.891 14 S 2.780 3.220 15 O -0.997 6.997 16 O -0.975 6.975 17 N -1.134 6.134 18 C 0.119 3.881 19 C -0.116 4.116 20 C -0.099 4.099 21 H 0.097 0.903 22 C -0.155 4.155 23 C 0.517 3.483 24 O -0.534 6.534 25 N -0.627 5.627 26 C 0.093 3.907 27 C 0.107 3.893 28 H 0.010 0.990 29 H 0.092 0.908 30 H 0.033 0.967 31 H 0.264 0.736 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.412 0.588 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.080 0.920 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.465 1.002 21.291 21.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.833 5.833 13 C -0.038 4.038 14 S 2.789 3.211 15 O -0.980 6.980 16 O -0.959 6.959 17 N -0.893 5.893 18 C -0.008 4.008 19 C -0.155 4.155 20 C -0.119 4.119 21 H 0.116 0.884 22 C -0.195 4.195 23 C 0.306 3.694 24 O -0.411 6.411 25 N -0.363 5.363 26 C -0.049 4.049 27 C -0.016 4.016 28 H 0.029 0.971 29 H 0.111 0.889 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.245 0.755 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.100 0.900 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.098 0.902 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.192 0.675 21.176 21.598 hybrid contribution -0.171 0.031 -0.784 0.803 sum -4.363 0.706 20.393 20.866 Atomic orbital electron populations 1.22120 0.98281 0.99717 1.00616 1.18717 0.91237 0.92965 0.80476 0.92367 1.21299 1.31618 1.13012 0.90066 0.92010 1.24907 0.94961 0.95010 0.99002 1.69846 1.36510 1.22716 1.23886 0.86554 0.79340 0.79585 0.81901 1.21238 1.20172 1.20244 1.57677 1.70016 1.19771 1.35794 1.21165 1.01801 0.82181 0.98645 1.01928 0.73631 0.73169 0.72422 1.93534 1.69123 1.60774 1.74591 1.93618 1.74361 1.56012 1.71861 1.56220 1.62597 1.17324 1.53177 1.21208 0.95069 0.93440 0.91106 1.21778 0.99769 0.98137 0.95797 1.22156 0.95683 0.99080 0.94941 0.88423 1.22529 0.93551 1.05490 0.97963 1.21018 0.87491 0.77303 0.83615 1.90732 1.24259 1.45936 1.80132 1.48197 1.18834 1.51387 1.17838 1.21554 0.96482 1.01598 0.85305 1.22168 0.82612 0.97912 0.98888 0.97053 0.88910 0.94754 0.92651 0.93260 0.93412 0.90931 0.75549 0.91537 0.90523 0.90224 0.90459 0.87122 0.87471 0.89952 0.92090 0.92091 0.90176 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.95 37.16 0.33 -2.91 16 2 C 0.27 6.39 2.62 -69.09 -0.18 6.21 16 3 H 0.06 1.54 6.91 -51.92 -0.36 1.18 16 4 C -0.52 -13.83 8.37 -34.44 -0.29 -14.12 16 5 H 0.06 1.64 7.65 -52.49 -0.40 1.23 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.57 11.32 55.43 0.63 -23.95 16 8 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.99 -19.57 3.12 -115.86 -0.36 -19.93 16 13 C 0.11 1.84 9.53 59.85 0.57 2.41 16 14 S 2.78 51.24 6.09 -107.50 -0.66 50.59 16 15 O -1.00 -19.61 16.68 -57.17 -0.95 -20.56 16 16 O -0.97 -21.90 16.70 -57.17 -0.95 -22.85 16 17 N -1.13 -14.56 6.05 -10.61 -0.06 -14.63 16 18 C 0.12 1.17 6.10 -4.04 -0.02 1.14 16 19 C -0.12 -0.76 4.70 -26.73 -0.13 -0.88 16 20 C -0.10 -0.59 3.18 -88.99 -0.28 -0.87 16 21 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 22 C -0.16 -1.25 5.58 -26.74 -0.15 -1.40 16 23 C 0.52 5.62 8.02 -10.86 -0.09 5.53 16 24 O -0.53 -8.10 17.35 5.55 0.10 -8.00 16 25 N -0.63 -5.08 3.33 -180.28 -0.60 -5.68 16 26 C 0.09 0.59 11.14 59.85 0.67 1.25 16 27 C 0.11 0.58 6.91 -3.12 -0.02 0.56 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 30 H 0.03 0.71 6.66 -51.93 -0.35 0.36 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.65 7.79 -51.93 -0.40 0.25 16 34 H 0.07 1.19 6.43 -51.93 -0.33 0.86 16 35 H 0.41 4.52 8.65 -34.47 -0.30 4.22 16 36 H 0.07 0.64 7.51 -51.93 -0.39 0.25 16 37 H 0.08 0.76 7.75 -51.93 -0.40 0.36 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 40 H 0.11 0.87 7.85 -51.93 -0.41 0.46 16 41 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.08 0.64 7.53 -51.93 -0.39 0.24 16 43 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 45 H 0.08 0.31 8.14 -51.92 -0.42 -0.11 16 46 H 0.07 0.35 7.89 -51.93 -0.41 -0.06 16 LS Contribution 382.16 15.07 5.76 5.76 Total: -1.00 -35.41 382.16 -9.21 -44.62 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.40 Total: 0.07 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 0.31 Total: -1.46 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -0.40 Total: -64.19 kcal Atomic # 8 Polarization: -49.61 SS G_CDS: -1.81 Total: -51.42 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 51.24 SS G_CDS: -0.66 Total: 50.59 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.41 -9.21 -44.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650029746.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.954 kcal (2) G-P(sol) polarization free energy of solvation -35.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds