Wall clock time and date at job start Tue Mar 31 2020 18:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 C 1.53002 * 109.47408 * 164.99913 * 18 17 14 20 20 C 1.52999 * 109.46988 * 179.97438 * 19 18 17 21 21 H 1.09000 * 110.85861 * 57.33686 * 20 19 18 22 22 C 1.54632 * 110.97202 * 293.54255 * 20 19 18 23 23 C 1.51277 * 104.19647 * 217.08448 * 22 20 19 24 24 O 1.21283 * 124.94131 * 196.28892 * 23 22 20 25 25 N 1.34424 * 110.11471 * 16.25324 * 23 22 20 26 26 C 1.46500 * 124.34698 * 180.42448 * 25 23 22 27 27 C 1.46764 * 111.30056 * 0.41007 * 25 23 22 28 28 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 29 29 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 30 30 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 33 33 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 34 34 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 35 35 H 0.97000 * 120.00897 * 245.00185 * 17 14 12 36 36 H 1.09006 * 109.47312 * 284.99498 * 18 17 14 37 37 H 1.09004 * 109.47167 * 44.99686 * 18 17 14 38 38 H 1.08999 * 109.47181 * 299.99992 * 19 18 17 39 39 H 1.09004 * 109.47142 * 59.99757 * 19 18 17 40 40 H 1.09000 * 110.48546 * 335.76712 * 22 20 19 41 41 H 1.08997 * 110.48231 * 98.27315 * 22 20 19 42 42 H 1.09000 * 109.47083 * 359.97438 * 26 25 23 43 43 H 1.09000 * 109.47132 * 119.97896 * 26 25 23 44 44 H 1.08999 * 109.47100 * 239.97904 * 26 25 23 45 45 H 1.09008 * 110.23962 * 223.97831 * 27 25 23 46 46 H 1.09000 * 110.24516 * 101.98455 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 6 0.6085 0.8078 5.4378 20 6 -0.2376 -0.0739 6.3585 21 1 0.3444 -0.9167 6.7312 22 6 -1.5163 -0.5600 5.6375 23 6 -2.5788 -0.5422 6.7142 24 8 -3.6483 -1.1098 6.6441 25 7 -2.1647 0.1936 7.7601 26 6 -2.9476 0.4115 8.9791 27 6 -0.8274 0.7504 7.5242 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.7088 1.1611 -3.4845 32 1 2.4158 -2.7376 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6905 -2.3002 0.9847 35 1 1.9052 1.7752 3.4681 36 1 0.3187 -0.4565 3.7178 37 1 1.7669 -0.8422 4.6782 38 1 1.4406 1.2293 6.0017 39 1 -0.0075 1.6149 5.0412 40 1 -1.7809 0.1215 4.8290 41 1 -1.3766 -1.5704 5.2531 42 1 -3.9007 -0.1111 8.8970 43 1 -2.3964 0.0291 9.8382 44 1 -3.1284 1.4785 9.1090 45 1 -0.2099 0.6389 8.4155 46 1 -0.9005 1.8013 7.2442 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650029746.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:58 Heat of formation + Delta-G solvation = -139.870677 kcal Electronic energy + Delta-G solvation = -27665.598442 eV Core-core repulsion = 23715.834890 eV Total energy + Delta-G solvation = -3949.763552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.41605 -38.34144 -38.08389 -37.83218 -36.82767 -36.62156 -34.50120 -34.16809 -30.87706 -30.31502 -28.41129 -27.25451 -26.99084 -26.80479 -23.93585 -22.57206 -21.58006 -20.55914 -20.13899 -18.73463 -18.53239 -18.11940 -17.78182 -17.33264 -17.14040 -16.66861 -16.37418 -15.89259 -15.80014 -15.13272 -14.81262 -14.66332 -14.60625 -14.50392 -14.34740 -13.84044 -13.67231 -13.37101 -13.28310 -13.20411 -13.14716 -13.12003 -13.03807 -12.94198 -12.86277 -12.76222 -12.56004 -12.28423 -12.14464 -12.07635 -11.84750 -11.73244 -11.72535 -11.11805 -10.85354 -10.48891 -10.35038 -9.69812 -9.62695 -8.10101 -6.23063 -0.25045 1.43735 1.45329 1.52254 1.54603 2.07355 2.15874 2.44843 2.71464 3.18316 3.39305 3.43318 3.56310 3.81134 4.04078 4.12698 4.22020 4.35006 4.41622 4.53950 4.58699 4.68788 4.71636 4.74667 4.78503 4.79486 4.87152 4.87591 4.96894 5.02605 5.07548 5.13107 5.20326 5.24137 5.30008 5.42102 5.59023 5.64177 5.75525 5.91817 6.10209 6.12019 6.28192 6.34067 6.84653 7.14221 7.45775 8.93604 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.017683 B = 0.002888 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.095530 B = 9692.995511 C =10587.038953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.274 3.726 3 H 0.026 0.974 4 C -0.539 4.539 5 H 0.055 0.945 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.953 3.047 9 H -0.282 1.282 10 H -0.279 1.279 11 H -0.267 1.267 12 N -0.998 5.998 13 C 0.102 3.898 14 S 2.796 3.204 15 O -1.010 7.010 16 O -1.021 7.021 17 N -1.117 6.117 18 C 0.105 3.895 19 C -0.106 4.106 20 C -0.088 4.088 21 H 0.109 0.891 22 C -0.155 4.155 23 C 0.504 3.496 24 O -0.591 6.591 25 N -0.625 5.625 26 C 0.087 3.913 27 C 0.106 3.894 28 H 0.039 0.961 29 H 0.064 0.936 30 H 0.042 0.958 31 H 0.264 0.736 32 H 0.038 0.962 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.423 0.577 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.060 0.940 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.104 0.896 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.171 1.038 23.114 23.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.170 3.830 3 H 0.044 0.956 4 C -0.578 4.578 5 H 0.073 0.927 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.778 3.222 9 H -0.208 1.208 10 H -0.205 1.205 11 H -0.192 1.192 12 N -0.839 5.839 13 C -0.044 4.044 14 S 2.805 3.195 15 O -0.993 6.993 16 O -1.005 7.005 17 N -0.881 5.881 18 C -0.020 4.020 19 C -0.146 4.146 20 C -0.107 4.107 21 H 0.127 0.873 22 C -0.195 4.195 23 C 0.293 3.707 24 O -0.473 6.473 25 N -0.358 5.358 26 C -0.055 4.055 27 C -0.016 4.016 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.259 0.741 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.115 0.885 39 H 0.104 0.896 40 H 0.131 0.869 41 H 0.125 0.875 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.122 0.878 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.863 0.723 23.027 23.360 hybrid contribution -0.248 0.044 -1.216 1.242 sum -4.112 0.767 21.812 22.209 Atomic orbital electron populations 1.21908 0.96811 1.00191 1.00557 1.18359 0.92202 0.91301 0.81141 0.95643 1.21652 1.31557 1.12993 0.91638 0.92691 1.25613 0.95275 0.95732 1.01588 1.69963 1.37288 1.23678 1.24334 0.85700 0.78455 0.79048 0.78960 1.20758 1.20514 1.19242 1.57556 1.70011 1.21003 1.35340 1.21360 1.01577 0.80458 1.00964 1.01196 0.73632 0.72290 0.72370 1.93513 1.69873 1.61321 1.74571 1.93551 1.76032 1.57466 1.73466 1.55713 1.62207 1.18183 1.51976 1.21565 0.94866 0.93824 0.91782 1.21722 1.00399 0.97762 0.94671 1.22108 0.94549 0.99405 0.94671 0.87303 1.22561 0.93752 1.05779 0.97410 1.21549 0.87249 0.77030 0.84848 1.90692 1.26653 1.48526 1.81403 1.48408 1.19784 1.50149 1.17480 1.21702 0.95809 1.02636 0.85341 1.22381 0.81293 0.98288 0.99650 0.94236 0.91754 0.93922 0.92690 0.94352 0.89866 0.90486 0.74144 0.91084 0.90162 0.88496 0.89643 0.86925 0.87473 0.92076 0.89988 0.90259 0.87765 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.84 8.95 71.98 0.64 -5.20 16 2 C 0.27 13.10 2.62 44.24 0.12 13.21 16 3 H 0.03 1.39 6.91 -2.38 -0.02 1.37 16 4 C -0.54 -28.92 8.37 25.60 0.21 -28.70 16 5 H 0.05 2.94 7.65 -2.91 -0.02 2.92 16 6 C 0.02 0.96 5.30 84.66 0.45 1.41 16 7 N -0.91 -51.01 11.32 21.45 0.24 -50.76 16 8 Si 0.95 43.25 29.54 68.60 2.03 45.27 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 12 N -1.00 -38.73 3.12 -520.46 -1.62 -40.35 16 13 C 0.10 3.30 9.53 127.77 1.22 4.52 16 14 S 2.80 100.58 6.09 -56.49 -0.34 100.23 16 15 O -1.01 -38.26 16.68 -128.00 -2.14 -40.39 16 16 O -1.02 -46.33 16.70 -128.00 -2.14 -48.47 16 17 N -1.12 -26.10 6.05 -187.47 -1.14 -27.24 16 18 C 0.11 1.73 6.10 86.38 0.53 2.26 16 19 C -0.11 -0.97 4.70 30.59 0.14 -0.82 16 20 C -0.09 -0.73 3.18 -9.74 -0.03 -0.76 16 21 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 22 C -0.16 -2.19 5.58 30.59 0.17 -2.02 16 23 C 0.50 10.56 8.02 87.90 0.71 11.26 16 24 O -0.59 -18.44 17.35 -3.04 -0.05 -18.49 16 25 N -0.63 -8.81 3.33 -842.88 -2.81 -11.62 16 26 C 0.09 0.95 11.14 127.77 1.42 2.37 16 27 C 0.11 0.74 6.91 86.83 0.60 1.34 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 3.18 6.07 -2.39 -0.01 3.16 16 30 H 0.04 1.72 6.66 -2.39 -0.02 1.71 16 31 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 32 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 2.06 7.79 -2.38 -0.02 2.05 16 34 H 0.08 2.41 6.43 -2.39 -0.02 2.39 16 35 H 0.42 8.27 8.65 -96.74 -0.84 7.44 16 36 H 0.07 1.14 7.51 -2.38 -0.02 1.13 16 37 H 0.08 1.31 7.75 -2.38 -0.02 1.29 16 38 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.08 0.70 8.08 -2.38 -0.02 0.68 16 40 H 0.11 1.55 7.85 -2.39 -0.02 1.53 16 41 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.06 0.94 7.53 -2.39 -0.02 0.93 16 43 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 46 H 0.09 0.44 7.89 -2.39 -0.02 0.42 16 Total: -1.00 -78.88 382.16 -1.65 -80.52 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.14 Total: 12.43 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 6.18 Total: -1.13 kcal Atomic # 7 Polarization: -124.65 SS G_CDS: -5.33 Total: -129.97 kcal Atomic # 8 Polarization: -103.02 SS G_CDS: -4.33 Total: -107.35 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: 100.58 SS G_CDS: -0.34 Total: 100.23 kcal Total: -78.88 -1.65 -80.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650029746.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.350 kcal (2) G-P(sol) polarization free energy of solvation -78.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds