Wall clock time and date at job start Tue Mar 31 2020 18:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46839 * 2 1 4 4 C 1.53001 * 109.46631 * 119.99570 * 2 1 3 5 5 N 1.46495 * 109.46914 * 175.00147 * 4 2 1 6 6 C 1.36940 * 120.00456 * 179.97438 * 5 4 2 7 7 H 1.08002 * 119.99592 * 0.02562 * 6 5 4 8 8 C 1.38807 * 120.00313 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99919 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00268 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46718 * 90.00043 * 10 8 6 12 12 H 1.48497 * 109.47311 * 210.00202 * 10 8 6 13 13 H 1.48496 * 109.47056 * 330.00408 * 10 8 6 14 14 N 1.46497 * 109.47236 * 239.99267 * 2 1 3 15 15 C 1.46496 * 120.00129 * 300.00469 * 14 2 1 16 16 C 1.34777 * 119.99525 * 119.99976 * 14 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 14 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 14 2 19 19 C 1.53004 * 109.47208 * 180.27843 * 18 16 14 20 20 C 1.52998 * 108.57831 * 300.70167 * 19 18 16 21 21 C 1.53200 * 108.64927 * 182.70194 * 19 18 16 22 22 C 1.55343 * 106.34455 * 211.21787 * 21 19 18 23 23 S 1.83892 * 99.54621 * 37.18158 * 22 21 19 24 24 O 1.42107 * 111.46537 * 215.82010 * 23 22 21 25 25 O 1.42097 * 111.61550 * 75.80811 * 23 22 21 26 26 N 1.46450 * 108.64358 * 58.69580 * 19 18 16 27 27 H 1.09011 * 109.46614 * 60.00514 * 1 2 3 28 28 H 1.08996 * 109.46839 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47124 * 300.00789 * 1 2 3 30 30 H 1.09007 * 109.46791 * 294.99922 * 4 2 1 31 31 H 1.08997 * 109.47560 * 55.00005 * 4 2 1 32 32 H 0.97001 * 120.00019 * 0.02562 * 5 4 2 33 33 H 0.97002 * 120.00123 * 179.97438 * 9 8 6 34 34 H 1.08997 * 109.47115 * 269.99822 * 15 14 2 35 35 H 1.08995 * 109.47364 * 30.00213 * 15 14 2 36 36 H 1.09002 * 109.47090 * 149.99764 * 15 14 2 37 37 H 1.09009 * 109.47352 * 300.27556 * 18 16 14 38 38 H 1.08998 * 109.47585 * 60.27844 * 18 16 14 39 39 H 1.08999 * 109.47365 * 59.29504 * 20 19 18 40 40 H 1.09001 * 109.46985 * 179.30234 * 20 19 18 41 41 H 1.09003 * 109.46895 * 299.29363 * 20 19 18 42 42 H 1.09005 * 110.09591 * 330.53347 * 21 19 18 43 43 H 1.09000 * 110.09823 * 92.14411 * 21 19 18 44 44 H 1.09003 * 111.49573 * 279.57725 * 22 21 19 45 45 H 1.09002 * 111.33648 * 154.72266 * 22 21 19 46 46 H 0.96998 * 126.09115 * 302.79115 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4999 -0.8263 1.1908 6 6 4.1838 -1.4378 2.2075 7 1 3.6467 -1.8429 3.0523 8 6 5.5672 -1.5369 2.1522 9 7 6.2244 -2.1251 3.1292 10 14 6.4962 -0.8369 0.6905 11 1 6.8568 0.5774 0.9646 12 1 7.7323 -1.6281 0.4646 13 1 5.6379 -0.9033 -0.5194 14 7 2.0184 -0.6907 -1.1960 15 6 1.6645 -2.0933 -1.4278 16 6 2.7933 -0.0358 -2.0832 17 8 3.0866 1.1253 -1.8912 18 6 3.3007 -0.7481 -3.3105 19 6 4.1554 0.2119 -4.1406 20 6 3.2945 1.4132 -4.5361 21 6 4.6049 -0.5095 -5.4151 22 6 5.9924 0.0822 -5.7862 23 16 6.6920 0.3002 -4.0996 24 8 7.4960 1.4690 -4.0172 25 8 7.1090 -0.9384 -3.5418 26 7 5.2668 0.6848 -3.3124 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.7515 -0.1581 2.1370 31 1 1.6053 -1.7197 1.2954 32 1 3.9824 -0.4621 0.4321 33 1 7.1912 -2.1947 3.0904 34 1 2.4157 -2.7378 -0.9714 35 1 0.6905 -2.3002 -0.9845 36 1 1.6238 -2.2854 -2.5000 37 1 3.9043 -1.6046 -3.0100 38 1 2.4555 -1.0907 -3.9073 39 1 2.9274 1.9089 -3.6374 40 1 3.8934 2.1134 -5.1185 41 1 2.4492 1.0731 -5.1345 42 1 4.6908 -1.5802 -5.2290 43 1 3.8942 -0.3246 -6.2206 44 1 5.8942 1.0375 -6.3020 45 1 6.5809 -0.6239 -6.3721 46 1 5.1903 1.1404 -2.4595 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667038114.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:38 Heat of formation + Delta-G solvation = -73.146112 kcal Electronic energy + Delta-G solvation = -29387.073345 eV Core-core repulsion = 25440.203188 eV Total energy + Delta-G solvation = -3946.870158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.49897 -38.37658 -37.04617 -36.34620 -35.85890 -34.17996 -32.27011 -31.93570 -30.77793 -30.24299 -27.89248 -26.80594 -25.89395 -24.66634 -22.31709 -21.42908 -20.39833 -19.59647 -18.93538 -17.62465 -17.54132 -16.96804 -16.69698 -16.01265 -15.80725 -15.63986 -14.97743 -14.69571 -14.60070 -14.06438 -13.81886 -13.58732 -13.41900 -13.27260 -12.90443 -12.84817 -12.70377 -12.47852 -12.46822 -12.25267 -12.10795 -12.04672 -11.98557 -11.95295 -11.77278 -11.61858 -11.35972 -11.01669 -10.91172 -10.77022 -10.68571 -10.53862 -10.03606 -9.53915 -9.46611 -9.46322 -8.84744 -8.43047 -7.18291 -5.72431 -3.07615 0.16451 2.54871 2.73841 3.08960 3.48916 3.52047 3.53189 3.61702 3.73338 3.98438 4.22261 4.40058 4.62815 4.67167 4.71368 4.92804 4.99064 5.07139 5.14867 5.18485 5.23193 5.26233 5.32989 5.40913 5.43631 5.53063 5.58567 5.60618 5.76568 5.81963 5.84658 5.93853 5.98433 6.00806 6.19016 6.31220 6.40936 6.61786 6.82395 7.27236 7.54593 8.02949 8.32222 8.46916 9.26639 9.99515 10.19031 11.45555 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.010892 B = 0.006059 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.063100 B = 4620.153678 C = 6506.698733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.121 3.879 3 H 0.101 0.899 4 C 0.149 3.851 5 N -0.751 5.751 6 C -0.246 4.246 7 H 0.089 0.911 8 C 0.009 3.991 9 N -0.933 5.933 10 Si 0.873 3.127 11 H -0.284 1.284 12 H -0.288 1.288 13 H -0.271 1.271 14 N -0.597 5.597 15 C 0.075 3.925 16 C 0.521 3.479 17 O -0.540 6.540 18 C -0.150 4.150 19 C 0.158 3.842 20 C -0.170 4.170 21 C -0.118 4.118 22 C -0.592 4.592 23 S 2.555 3.445 24 O -0.961 6.961 25 O -0.946 6.946 26 N -1.078 6.078 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.028 0.972 32 H 0.363 0.637 33 H 0.259 0.741 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.099 0.901 43 H 0.113 0.887 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.417 2.415 -22.387 25.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.018 3.982 3 H 0.119 0.881 4 C 0.021 3.979 5 N -0.397 5.397 6 C -0.375 4.375 7 H 0.107 0.893 8 C -0.187 4.187 9 N -0.581 5.581 10 Si 0.703 3.297 11 H -0.211 1.211 12 H -0.215 1.215 13 H -0.197 1.197 14 N -0.330 5.330 15 C -0.068 4.068 16 C 0.309 3.691 17 O -0.418 6.418 18 C -0.191 4.191 19 C 0.068 3.932 20 C -0.228 4.228 21 C -0.157 4.157 22 C -0.723 4.723 23 S 2.648 3.352 24 O -0.950 6.950 25 O -0.935 6.935 26 N -0.848 5.848 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.196 0.804 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.117 0.883 43 H 0.131 0.869 44 H 0.159 0.841 45 H 0.158 0.842 46 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -10.242 2.784 -21.710 24.166 hybrid contribution 0.200 0.393 -0.974 1.069 sum -10.042 3.177 -22.684 25.010 Atomic orbital electron populations 1.22044 0.94890 1.02160 1.02178 1.21475 0.93611 0.98518 0.84644 0.88058 1.20968 0.85844 0.97332 0.93776 1.42620 1.01178 1.71384 1.24506 1.19006 0.89789 1.29736 0.99012 0.89303 1.24619 0.96170 1.00453 0.97466 1.69694 1.07353 1.48483 1.32554 0.86741 0.80308 0.79140 0.83497 1.21079 1.21453 1.19729 1.47770 1.50392 1.12398 1.22414 1.21804 1.01875 0.82027 1.01090 1.20356 0.77538 0.86837 0.84332 1.90549 1.57784 1.17065 1.76418 1.22246 1.01155 1.00027 0.95690 1.20261 0.88973 0.94753 0.89256 1.22562 0.98920 0.97394 1.03934 1.22480 0.95378 1.01122 0.96708 1.30723 1.08157 1.11013 1.22382 1.06846 0.74195 0.75382 0.78733 1.93605 1.67451 1.48462 1.85521 1.93694 1.80434 1.45433 1.73971 1.55124 1.20382 1.75759 1.33521 0.92635 0.92245 0.91233 0.94671 0.95462 0.80384 0.93058 0.91436 0.90873 0.91596 0.87666 0.87941 0.88310 0.92448 0.92358 0.88286 0.86880 0.84052 0.84200 0.71199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.17 37.16 0.34 -1.37 16 2 C 0.12 1.83 2.80 -67.93 -0.19 1.63 16 3 H 0.10 1.73 6.90 -51.93 -0.36 1.37 16 4 C 0.15 2.82 5.56 -4.04 -0.02 2.79 16 5 N -0.75 -18.26 5.24 -59.91 -0.31 -18.58 16 6 C -0.25 -7.14 10.47 -15.06 -0.16 -7.30 16 7 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 8 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 9 N -0.93 -30.40 13.97 55.49 0.78 -29.62 16 10 Si 0.87 24.25 27.73 -169.99 -4.71 19.54 16 11 H -0.28 -7.92 7.11 56.52 0.40 -7.52 16 12 H -0.29 -8.23 7.11 56.52 0.40 -7.83 16 13 H -0.27 -7.07 6.52 56.52 0.37 -6.71 16 14 N -0.60 -8.44 2.24 -173.94 -0.39 -8.83 16 15 C 0.08 0.84 9.40 59.84 0.56 1.40 16 16 C 0.52 7.61 6.86 -10.98 -0.08 7.53 16 17 O -0.54 -9.16 11.12 5.55 0.06 -9.10 16 18 C -0.15 -1.63 3.23 -27.88 -0.09 -1.72 16 19 C 0.16 1.66 0.83 -131.74 -0.11 1.55 16 20 C -0.17 -1.61 8.17 37.16 0.30 -1.31 16 21 C -0.12 -0.80 5.54 -25.38 -0.14 -0.94 16 22 C -0.59 -4.31 7.65 38.40 0.29 -4.02 16 23 S 2.55 35.56 6.47 -107.50 -0.70 34.86 16 24 O -0.96 -16.52 18.14 -57.40 -1.04 -17.56 16 25 O -0.95 -17.01 18.14 -57.40 -1.04 -18.05 16 26 N -1.08 -15.49 5.70 0.60 0.00 -15.48 16 27 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 28 H 0.06 0.59 6.66 -51.93 -0.35 0.25 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.03 0.51 7.84 -51.93 -0.41 0.10 16 32 H 0.36 8.97 4.93 -40.82 -0.20 8.77 16 33 H 0.26 8.12 8.31 -40.82 -0.34 7.78 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.70 6.43 -51.93 -0.33 0.36 16 36 H 0.07 0.52 6.45 -51.93 -0.33 0.18 16 37 H 0.11 1.24 8.10 -51.92 -0.42 0.82 16 38 H 0.10 0.71 7.41 -51.93 -0.38 0.32 16 39 H 0.10 1.23 5.35 -51.93 -0.28 0.95 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.41 8.04 -51.93 -0.42 -0.01 16 42 H 0.10 0.58 7.83 -51.93 -0.41 0.18 16 43 H 0.11 0.45 7.71 -51.93 -0.40 0.05 16 44 H 0.14 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.14 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.44 7.41 7.22 -40.36 -0.29 7.11 16 LS Contribution 368.90 15.07 5.56 5.56 Total: -1.00 -40.13 368.90 -8.31 -48.44 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -7.13 Total: 10.39 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 0.62 Total: -1.57 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: 0.07 Total: -72.51 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -2.02 Total: -44.71 kcal Atomic # 14 Polarization: 24.25 SS G_CDS: -4.71 Total: 19.54 kcal Atomic # 16 Polarization: 35.56 SS G_CDS: -0.70 Total: 34.86 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -40.13 -8.31 -48.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667038114.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.706 kcal (2) G-P(sol) polarization free energy of solvation -40.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds