Wall clock time and date at job start Tue Mar 31 2020 18:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46839 * 2 1 4 4 C 1.53001 * 109.46631 * 119.99570 * 2 1 3 5 5 N 1.46495 * 109.46914 * 175.00147 * 4 2 1 6 6 C 1.36940 * 120.00456 * 179.97438 * 5 4 2 7 7 H 1.08002 * 119.99592 * 0.02562 * 6 5 4 8 8 C 1.38807 * 120.00313 * 180.02562 * 6 5 4 9 9 N 1.31619 * 119.99919 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00268 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46718 * 90.00043 * 10 8 6 12 12 H 1.48497 * 109.47311 * 210.00202 * 10 8 6 13 13 H 1.48496 * 109.47056 * 330.00408 * 10 8 6 14 14 N 1.46497 * 109.47236 * 239.99267 * 2 1 3 15 15 C 1.46496 * 120.00129 * 300.00469 * 14 2 1 16 16 C 1.34777 * 119.99525 * 119.99976 * 14 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 14 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 14 2 19 19 C 1.53004 * 109.47208 * 180.27843 * 18 16 14 20 20 C 1.52998 * 108.57831 * 300.70167 * 19 18 16 21 21 C 1.53200 * 108.64927 * 182.70194 * 19 18 16 22 22 C 1.55343 * 106.34455 * 211.21787 * 21 19 18 23 23 S 1.83892 * 99.54621 * 37.18158 * 22 21 19 24 24 O 1.42107 * 111.46537 * 215.82010 * 23 22 21 25 25 O 1.42097 * 111.61550 * 75.80811 * 23 22 21 26 26 N 1.46450 * 108.64358 * 58.69580 * 19 18 16 27 27 H 1.09011 * 109.46614 * 60.00514 * 1 2 3 28 28 H 1.08996 * 109.46839 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47124 * 300.00789 * 1 2 3 30 30 H 1.09007 * 109.46791 * 294.99922 * 4 2 1 31 31 H 1.08997 * 109.47560 * 55.00005 * 4 2 1 32 32 H 0.97001 * 120.00019 * 0.02562 * 5 4 2 33 33 H 0.97002 * 120.00123 * 179.97438 * 9 8 6 34 34 H 1.08997 * 109.47115 * 269.99822 * 15 14 2 35 35 H 1.08995 * 109.47364 * 30.00213 * 15 14 2 36 36 H 1.09002 * 109.47090 * 149.99764 * 15 14 2 37 37 H 1.09009 * 109.47352 * 300.27556 * 18 16 14 38 38 H 1.08998 * 109.47585 * 60.27844 * 18 16 14 39 39 H 1.08999 * 109.47365 * 59.29504 * 20 19 18 40 40 H 1.09001 * 109.46985 * 179.30234 * 20 19 18 41 41 H 1.09003 * 109.46895 * 299.29363 * 20 19 18 42 42 H 1.09005 * 110.09591 * 330.53347 * 21 19 18 43 43 H 1.09000 * 110.09823 * 92.14411 * 21 19 18 44 44 H 1.09003 * 111.49573 * 279.57725 * 22 21 19 45 45 H 1.09002 * 111.33648 * 154.72266 * 22 21 19 46 46 H 0.96998 * 126.09115 * 302.79115 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4999 -0.8263 1.1908 6 6 4.1838 -1.4378 2.2075 7 1 3.6467 -1.8429 3.0523 8 6 5.5672 -1.5369 2.1522 9 7 6.2244 -2.1251 3.1292 10 14 6.4962 -0.8369 0.6905 11 1 6.8568 0.5774 0.9646 12 1 7.7323 -1.6281 0.4646 13 1 5.6379 -0.9033 -0.5194 14 7 2.0184 -0.6907 -1.1960 15 6 1.6645 -2.0933 -1.4278 16 6 2.7933 -0.0358 -2.0832 17 8 3.0866 1.1253 -1.8912 18 6 3.3007 -0.7481 -3.3105 19 6 4.1554 0.2119 -4.1406 20 6 3.2945 1.4132 -4.5361 21 6 4.6049 -0.5095 -5.4151 22 6 5.9924 0.0822 -5.7862 23 16 6.6920 0.3002 -4.0996 24 8 7.4960 1.4690 -4.0172 25 8 7.1090 -0.9384 -3.5418 26 7 5.2668 0.6848 -3.3124 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.7515 -0.1581 2.1370 31 1 1.6053 -1.7197 1.2954 32 1 3.9824 -0.4621 0.4321 33 1 7.1912 -2.1947 3.0904 34 1 2.4157 -2.7378 -0.9714 35 1 0.6905 -2.3002 -0.9845 36 1 1.6238 -2.2854 -2.5000 37 1 3.9043 -1.6046 -3.0100 38 1 2.4555 -1.0907 -3.9073 39 1 2.9274 1.9089 -3.6374 40 1 3.8934 2.1134 -5.1185 41 1 2.4492 1.0731 -5.1345 42 1 4.6908 -1.5802 -5.2290 43 1 3.8942 -0.3246 -6.2206 44 1 5.8942 1.0375 -6.3020 45 1 6.5809 -0.6239 -6.3721 46 1 5.1903 1.1404 -2.4595 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667038114.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:38 Heat of formation + Delta-G solvation = -107.487681 kcal Electronic energy + Delta-G solvation = -29388.562508 eV Core-core repulsion = 25440.203188 eV Total energy + Delta-G solvation = -3948.359320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.48821 -39.31065 -38.18089 -37.58314 -36.98493 -35.95950 -33.84552 -32.73781 -32.46545 -31.22286 -28.65944 -27.77998 -27.54058 -25.36048 -24.13003 -22.66125 -21.34790 -20.59246 -20.21430 -19.51051 -18.62032 -18.02794 -17.54447 -17.09972 -16.83839 -16.76186 -16.64712 -16.06119 -15.71372 -15.50547 -14.97114 -14.75575 -14.35497 -14.30026 -14.16212 -14.06590 -13.82836 -13.72436 -13.57804 -13.30022 -13.26993 -13.15692 -13.13060 -12.99753 -12.94264 -12.71936 -12.47844 -12.39412 -12.31441 -12.10094 -11.93515 -11.79987 -11.70303 -11.46442 -11.12634 -10.50306 -10.38323 -9.53265 -9.35666 -8.14606 -5.43031 -0.75611 1.19412 1.25740 1.30171 1.60508 1.69622 2.10543 2.32224 2.64256 3.01379 3.18947 3.28470 3.43124 3.57276 3.67732 3.84304 3.99880 4.04861 4.22136 4.29118 4.32543 4.40236 4.47766 4.55644 4.65093 4.70829 4.77032 4.80448 4.84857 4.87452 4.92231 4.93984 5.05965 5.09424 5.15894 5.26640 5.34085 5.59124 5.67652 5.74807 6.11055 6.12499 6.51323 6.99318 7.28073 7.78659 7.94307 9.06970 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.010892 B = 0.006059 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.063100 B = 4620.153678 C = 6506.698733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.127 3.873 3 H 0.076 0.924 4 C 0.143 3.857 5 N -0.755 5.755 6 C -0.218 4.218 7 H 0.070 0.930 8 C -0.047 4.047 9 N -0.975 5.975 10 Si 0.922 3.078 11 H -0.290 1.290 12 H -0.302 1.302 13 H -0.254 1.254 14 N -0.604 5.604 15 C 0.071 3.929 16 C 0.505 3.495 17 O -0.571 6.571 18 C -0.148 4.148 19 C 0.144 3.856 20 C -0.165 4.165 21 C -0.116 4.116 22 C -0.533 4.533 23 S 2.515 3.485 24 O -1.015 7.015 25 O -1.006 7.006 26 N -1.094 6.094 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.040 0.960 32 H 0.361 0.639 33 H 0.257 0.743 34 H 0.036 0.964 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.153 0.847 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.163 0.837 44 H 0.172 0.828 45 H 0.178 0.822 46 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.631 1.844 -27.008 30.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.023 3.977 3 H 0.094 0.906 4 C 0.016 3.984 5 N -0.400 5.400 6 C -0.350 4.350 7 H 0.088 0.912 8 C -0.240 4.240 9 N -0.627 5.627 10 Si 0.752 3.248 11 H -0.218 1.218 12 H -0.229 1.229 13 H -0.179 1.179 14 N -0.336 5.336 15 C -0.071 4.071 16 C 0.295 3.705 17 O -0.452 6.452 18 C -0.189 4.189 19 C 0.055 3.945 20 C -0.223 4.223 21 C -0.154 4.154 22 C -0.669 4.669 23 S 2.616 3.384 24 O -1.004 7.004 25 O -0.995 6.995 26 N -0.861 5.861 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.194 0.806 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.110 0.890 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.171 0.829 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.112 0.888 42 H 0.132 0.868 43 H 0.181 0.819 44 H 0.190 0.810 45 H 0.195 0.805 46 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -13.493 2.211 -26.321 29.661 hybrid contribution 1.041 0.595 0.454 1.282 sum -12.453 2.806 -25.867 28.845 Atomic orbital electron populations 1.21944 0.91190 1.03604 1.03186 1.21280 0.96269 0.96597 0.83574 0.90593 1.21242 0.82592 0.98420 0.96132 1.42712 1.03552 1.70631 1.23128 1.19076 0.89672 1.27322 0.98896 0.91250 1.25126 0.97227 1.02171 0.99455 1.69799 1.07351 1.51096 1.34426 0.85942 0.79022 0.77771 0.82101 1.21757 1.22913 1.17901 1.47944 1.50424 1.13482 1.21743 1.22003 1.01682 0.79673 1.03774 1.21178 0.77023 0.86800 0.85486 1.90557 1.58595 1.18711 1.77299 1.22375 1.02704 0.99187 0.94684 1.20757 0.88127 0.95437 0.90222 1.22495 0.99931 0.96993 1.02912 1.22743 0.95448 1.01417 0.95839 1.30484 1.07652 1.13856 1.14934 1.07742 0.74464 0.73754 0.82411 1.93526 1.69467 1.49831 1.87621 1.93614 1.81799 1.46617 1.77477 1.55210 1.21839 1.75530 1.33487 0.91254 0.90509 0.90640 0.94869 0.94230 0.80619 0.93424 0.94480 0.88966 0.87572 0.88744 0.82928 0.91808 0.91737 0.88824 0.86820 0.81916 0.81033 0.80480 0.73267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.17 71.98 0.66 -2.06 16 2 C 0.13 3.68 2.80 44.99 0.13 3.81 16 3 H 0.08 2.61 6.90 -2.39 -0.02 2.59 16 4 C 0.14 5.32 5.56 86.38 0.48 5.80 16 5 N -0.76 -37.07 5.24 -343.46 -1.80 -38.87 16 6 C -0.22 -12.96 10.47 84.03 0.88 -12.08 16 7 H 0.07 4.36 8.06 -2.91 -0.02 4.34 16 8 C -0.05 -3.01 5.50 84.86 0.47 -2.54 16 9 N -0.98 -65.74 13.97 21.65 0.30 -65.43 16 10 Si 0.92 52.42 27.73 68.60 1.90 54.32 16 11 H -0.29 -16.62 7.11 99.48 0.71 -15.91 16 12 H -0.30 -17.73 7.11 99.48 0.71 -17.03 16 13 H -0.25 -13.48 6.52 99.48 0.65 -12.83 16 14 N -0.60 -15.87 2.24 -822.61 -1.85 -17.71 16 15 C 0.07 1.37 9.40 127.77 1.20 2.57 16 16 C 0.51 13.95 6.86 87.66 0.60 14.55 16 17 O -0.57 -19.45 11.12 -3.04 -0.03 -19.48 16 18 C -0.15 -2.72 3.23 29.85 0.10 -2.63 16 19 C 0.14 2.54 0.83 3.68 0.00 2.54 16 20 C -0.16 -2.53 8.17 71.98 0.59 -1.94 16 21 C -0.12 -0.86 5.54 31.47 0.17 -0.69 16 22 C -0.53 -5.02 7.65 72.79 0.56 -4.46 16 23 S 2.51 69.69 6.47 -56.49 -0.37 69.32 16 24 O -1.01 -36.55 18.14 -127.79 -2.32 -38.87 16 25 O -1.01 -37.28 18.14 -127.79 -2.32 -39.60 16 26 N -1.09 -31.20 5.70 -152.03 -0.87 -32.07 16 27 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.08 1.23 6.66 -2.39 -0.02 1.21 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.04 1.41 7.84 -2.39 -0.02 1.39 16 32 H 0.36 18.09 4.93 -92.71 -0.46 17.64 16 33 H 0.26 16.71 8.31 -92.71 -0.77 15.94 16 34 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 1.40 6.43 -2.39 -0.02 1.39 16 36 H 0.11 1.16 6.45 -2.39 -0.02 1.14 16 37 H 0.09 1.99 8.10 -2.38 -0.02 1.97 16 38 H 0.15 1.15 7.41 -2.39 -0.02 1.13 16 39 H 0.06 1.49 5.35 -2.39 -0.01 1.48 16 40 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.09 0.75 8.04 -2.39 -0.02 0.73 16 42 H 0.11 0.64 7.83 -2.38 -0.02 0.62 16 43 H 0.16 -0.19 7.71 -2.39 -0.02 -0.20 16 44 H 0.17 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.18 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.43 15.02 7.22 -93.00 -0.67 14.35 16 Total: -1.00 -96.95 368.90 -1.69 -98.64 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: -0.18 Total: 26.86 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 5.83 Total: 2.88 kcal Atomic # 7 Polarization: -149.88 SS G_CDS: -4.21 Total: -154.09 kcal Atomic # 8 Polarization: -93.27 SS G_CDS: -4.67 Total: -97.94 kcal Atomic # 14 Polarization: 52.42 SS G_CDS: 1.90 Total: 54.32 kcal Atomic # 16 Polarization: 69.69 SS G_CDS: -0.37 Total: 69.32 kcal Total: -96.95 -1.69 -98.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667038114.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.845 kcal (2) G-P(sol) polarization free energy of solvation -96.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds