Wall clock time and date at job start Tue Mar 31 2020 17:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46790 * 2 1 4 4 C 1.52999 * 109.47276 * 240.00204 * 2 1 3 5 5 C 1.53000 * 109.47079 * 174.99828 * 4 2 1 6 6 N 1.46507 * 109.46737 * 179.97438 * 5 4 2 7 7 C 1.36940 * 119.99501 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00609 * 359.97438 * 7 6 5 9 9 C 1.38819 * 119.99411 * 180.02562 * 7 6 5 10 10 N 1.31612 * 120.00038 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99341 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47452 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.46989 * 119.99985 * 11 9 7 14 14 H 1.48498 * 109.46853 * 239.99344 * 11 9 7 15 15 N 1.46500 * 109.47167 * 119.99717 * 2 1 3 16 16 C 1.34781 * 120.00007 * 274.99764 * 15 2 1 17 17 O 1.21280 * 120.00152 * 0.02562 * 16 15 2 18 18 C 1.50694 * 119.99784 * 180.02562 * 16 15 2 19 19 N 1.46501 * 109.47257 * 180.02562 * 18 16 15 20 20 C 1.47025 * 120.99463 * 84.99781 * 19 18 16 21 21 C 1.52759 * 109.48151 * 122.55698 * 20 19 18 22 22 C 1.52677 * 110.66828 * 64.31676 * 21 20 19 23 23 C 1.53278 * 109.77053 * 289.71502 * 22 21 20 24 24 S 1.66407 * 120.99436 * 265.02588 * 19 18 16 25 25 O 1.42098 * 104.53612 * 344.36336 * 24 19 18 26 26 O 1.42093 * 104.53429 * 112.73414 * 24 19 18 27 27 H 1.08998 * 109.47196 * 60.00230 * 1 2 3 28 28 H 1.08998 * 109.47082 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47031 * 299.99874 * 1 2 3 30 30 H 1.09008 * 109.46726 * 294.99767 * 4 2 1 31 31 H 1.09000 * 109.47495 * 54.99536 * 4 2 1 32 32 H 1.08995 * 109.47138 * 299.99401 * 5 4 2 33 33 H 1.09000 * 109.47528 * 60.00230 * 5 4 2 34 34 H 0.96994 * 120.00100 * 0.02562 * 6 5 4 35 35 H 0.97004 * 119.99652 * 180.02562 * 10 9 7 36 36 H 0.97003 * 119.99686 * 95.00437 * 15 2 1 37 37 H 1.09003 * 109.47417 * 60.00526 * 18 16 15 38 38 H 1.09002 * 109.47535 * 300.00616 * 18 16 15 39 39 H 1.09002 * 109.46956 * 242.56107 * 20 19 18 40 40 H 1.09001 * 109.46945 * 2.55864 * 20 19 18 41 41 H 1.09001 * 109.23619 * 184.62044 * 21 20 19 42 42 H 1.09000 * 109.23438 * 304.00477 * 21 20 19 43 43 H 1.09002 * 109.41802 * 169.62423 * 22 21 20 44 44 H 1.09000 * 109.42065 * 49.80960 * 22 21 20 45 45 H 1.08999 * 109.67800 * 302.03532 * 23 22 21 46 46 H 1.08995 * 109.68202 * 181.48651 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 7 4.0532 -1.3043 -2.5096 7 6 5.3953 -1.3411 -2.7789 8 1 6.0938 -0.8604 -2.1100 9 6 5.8580 -1.9955 -3.9124 10 7 5.0068 -2.5810 -4.7278 11 14 7.6888 -2.0451 -4.2801 12 1 8.4272 -1.3172 -3.2171 13 1 8.1469 -3.4571 -4.3235 14 1 7.9477 -1.4003 -5.5925 15 7 2.0183 -0.6905 1.1962 16 6 2.1471 -0.0181 2.3572 17 8 1.8582 1.1585 2.4117 18 6 2.6500 -0.7283 3.5874 19 7 2.6986 0.2129 4.7091 20 6 1.5072 0.4750 5.5297 21 6 1.8161 0.1589 6.9919 22 6 2.8923 1.0983 7.5306 23 6 4.2428 0.7622 6.8883 24 16 4.1039 1.0177 5.0920 25 8 5.1219 0.3060 4.4018 26 8 3.8268 2.3796 4.7962 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.7516 -1.7715 -1.2055 31 1 1.6054 -0.2618 -2.1370 32 1 3.8531 0.4371 -1.3574 33 1 3.9995 -1.0727 -0.4260 34 1 3.4259 -1.7357 -3.1105 35 1 5.3302 -3.0386 -5.5196 36 1 2.2491 -1.6317 1.1526 37 1 3.6493 -1.1201 3.3979 38 1 1.9778 -1.5507 3.8325 39 1 1.2254 1.5239 5.4364 40 1 0.6851 -0.1538 5.1879 41 1 0.9084 0.2756 7.5840 42 1 2.1656 -0.8705 7.0706 43 1 2.9664 0.9823 8.6119 44 1 2.6252 2.1285 7.2950 45 1 4.4976 -0.2778 7.0924 46 1 5.0149 1.4161 7.2933 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668143518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:33 Heat of formation + Delta-G solvation = -97.549705 kcal Electronic energy + Delta-G solvation = -27431.950071 eV Core-core repulsion = 23484.021694 eV Total energy + Delta-G solvation = -3947.928377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.85883 -37.93148 -37.23251 -36.43453 -36.05936 -34.42788 -34.22713 -31.97058 -30.77470 -29.74859 -27.83881 -27.24564 -24.71116 -23.92249 -21.83502 -21.74195 -20.96818 -20.38984 -19.01303 -17.73795 -17.40649 -17.19583 -16.86271 -16.25760 -15.74912 -15.71679 -15.07627 -14.61956 -14.58538 -14.38556 -14.35999 -13.79619 -13.74259 -13.48934 -13.26335 -12.90581 -12.83097 -12.74441 -12.39076 -12.26501 -12.20545 -12.11092 -11.89506 -11.79177 -11.51333 -11.36767 -11.16904 -10.98609 -10.77346 -10.75078 -10.59690 -10.51636 -10.18657 -9.96893 -9.66052 -9.11479 -8.95193 -8.81576 -6.88081 -5.73034 -3.01307 -0.04940 2.22637 2.68751 3.24134 3.46954 3.53048 3.54638 3.55727 3.79300 3.92836 4.18806 4.32099 4.53489 4.61355 4.65294 4.75852 4.80708 4.97047 5.04346 5.11715 5.13981 5.27694 5.29008 5.32535 5.39223 5.40479 5.59322 5.61019 5.68935 5.75633 5.79606 5.97477 6.06725 6.14168 6.28189 6.32203 6.38723 6.61040 6.87850 6.92477 7.60428 7.76275 8.31090 8.46316 9.57521 10.15181 10.50050 11.50081 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.015398 B = 0.002741 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.009375 B =10214.359721 C =11543.968806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.144 3.856 3 H 0.088 0.912 4 C -0.134 4.134 5 C 0.152 3.848 6 N -0.734 5.734 7 C -0.236 4.236 8 H 0.071 0.929 9 C -0.016 4.016 10 N -0.935 5.935 11 Si 0.907 3.093 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.292 1.292 15 N -0.719 5.719 16 C 0.486 3.514 17 O -0.527 6.527 18 C 0.105 3.895 19 N -0.978 5.978 20 C 0.118 3.882 21 C -0.156 4.156 22 C -0.110 4.110 23 C -0.620 4.620 24 S 2.599 3.401 25 O -0.954 6.954 26 O -0.937 6.937 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.018 0.982 33 H 0.020 0.980 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.402 0.598 37 H 0.124 0.876 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.135 0.865 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.105 2.640 28.460 30.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.039 3.961 3 H 0.106 0.894 4 C -0.172 4.172 5 C 0.025 3.975 6 N -0.378 5.378 7 C -0.368 4.368 8 H 0.089 0.911 9 C -0.212 4.212 10 N -0.584 5.584 11 Si 0.738 3.262 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 N -0.371 5.371 16 C 0.270 3.730 17 O -0.402 6.402 18 C -0.024 4.024 19 N -0.815 5.815 20 C -0.008 4.008 21 C -0.195 4.195 22 C -0.148 4.148 23 C -0.749 4.749 24 S 2.692 3.308 25 O -0.944 6.944 26 O -0.926 6.926 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.216 0.784 35 H 0.064 0.936 36 H 0.236 0.764 37 H 0.142 0.858 38 H 0.127 0.873 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.153 0.847 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.558 4.005 27.911 30.109 hybrid contribution 0.761 -1.024 0.049 1.277 sum -9.797 2.981 27.961 29.777 Atomic orbital electron populations 1.22139 0.95486 1.01850 1.02217 1.20981 0.93485 0.97815 0.83799 0.89390 1.22059 0.98062 1.00730 0.96374 1.20654 0.90375 0.95706 0.90783 1.42377 1.05377 1.64922 1.25154 1.19309 0.83869 1.28166 1.05426 0.91122 1.24741 0.97733 1.01006 0.97677 1.69671 1.32674 1.40926 1.15164 0.86111 0.85123 0.77187 0.77795 1.20483 1.21884 1.21889 1.46120 1.67153 1.14274 1.09597 1.21281 0.78456 0.88131 0.85174 1.90745 1.49141 1.15479 1.84857 1.21210 1.05335 0.91688 0.84214 1.57131 1.25793 1.59590 1.38986 1.21511 0.88175 1.02946 0.88138 1.22136 1.00253 1.00661 0.96440 1.21313 0.90428 1.00907 1.02192 1.30568 1.06378 1.11760 1.26205 1.05566 0.73276 0.74741 0.77239 1.93613 1.56520 1.73726 1.70538 1.93641 1.83311 1.33941 1.81746 0.91623 0.92588 0.92510 0.91356 0.90314 0.96388 0.96206 0.78357 0.93627 0.76357 0.85834 0.87281 0.90153 0.89188 0.88986 0.90322 0.89548 0.89807 0.84687 0.84955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.48 37.16 0.35 -1.50 16 2 C 0.14 2.00 2.57 -67.93 -0.17 1.82 16 3 H 0.09 1.43 7.58 -51.93 -0.39 1.03 16 4 C -0.13 -2.10 4.87 -26.73 -0.13 -2.23 16 5 C 0.15 3.16 6.15 -4.04 -0.02 3.13 16 6 N -0.73 -19.06 5.60 -59.90 -0.34 -19.39 16 7 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 8 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 9 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 10 N -0.94 -28.74 13.06 55.49 0.72 -28.01 16 11 Si 0.91 23.01 29.55 -169.99 -5.02 17.99 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 15 N -0.72 -8.90 4.53 -53.81 -0.24 -9.14 16 16 C 0.49 6.47 7.86 -10.99 -0.09 6.38 16 17 O -0.53 -9.08 16.09 5.56 0.09 -9.00 16 18 C 0.10 0.98 6.13 -5.20 -0.03 0.95 16 19 N -0.98 -9.16 2.47 -115.40 -0.29 -9.44 16 20 C 0.12 0.77 6.35 -3.88 -0.02 0.75 16 21 C -0.16 -0.60 5.80 -27.02 -0.16 -0.75 16 22 C -0.11 -0.50 5.78 -26.75 -0.15 -0.65 16 23 C -0.62 -3.51 6.59 37.30 0.25 -3.27 16 24 S 2.60 28.51 5.73 -107.50 -0.62 27.89 16 25 O -0.95 -13.61 16.51 -57.50 -0.95 -14.56 16 26 O -0.94 -14.24 18.10 -57.50 -1.04 -15.28 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.02 0.41 7.75 -51.93 -0.40 0.01 16 34 H 0.38 10.29 7.67 -40.82 -0.31 9.98 16 35 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.40 4.10 8.60 -40.82 -0.35 3.75 16 37 H 0.12 1.17 6.88 -51.93 -0.36 0.81 16 38 H 0.11 0.58 8.07 -51.93 -0.42 0.16 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 0.47 7.92 -51.93 -0.41 0.05 16 41 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.08 0.23 8.11 -51.93 -0.42 -0.19 16 43 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 44 H 0.08 0.42 8.13 -51.93 -0.42 0.00 16 45 H 0.13 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 386.46 15.07 5.82 5.82 Total: -1.00 -40.01 386.46 -9.98 -49.99 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -7.69 Total: 6.07 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -0.43 Total: -2.94 kcal Atomic # 7 Polarization: -65.85 SS G_CDS: -0.14 Total: -65.99 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -1.90 Total: -38.83 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Atomic # 16 Polarization: 28.51 SS G_CDS: -0.62 Total: 27.89 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -40.01 -9.98 -49.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668143518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.563 kcal (2) G-P(sol) polarization free energy of solvation -40.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds