Wall clock time and date at job start Tue Mar 31 2020 17:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46790 * 2 1 4 4 C 1.52999 * 109.47276 * 240.00204 * 2 1 3 5 5 C 1.53000 * 109.47079 * 174.99828 * 4 2 1 6 6 N 1.46507 * 109.46737 * 179.97438 * 5 4 2 7 7 C 1.36940 * 119.99501 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00609 * 359.97438 * 7 6 5 9 9 C 1.38819 * 119.99411 * 180.02562 * 7 6 5 10 10 N 1.31612 * 120.00038 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99341 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47452 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.46989 * 119.99985 * 11 9 7 14 14 H 1.48498 * 109.46853 * 239.99344 * 11 9 7 15 15 N 1.46500 * 109.47167 * 119.99717 * 2 1 3 16 16 C 1.34781 * 120.00007 * 274.99764 * 15 2 1 17 17 O 1.21280 * 120.00152 * 0.02562 * 16 15 2 18 18 C 1.50694 * 119.99784 * 180.02562 * 16 15 2 19 19 N 1.46501 * 109.47257 * 180.02562 * 18 16 15 20 20 C 1.47025 * 120.99463 * 84.99781 * 19 18 16 21 21 C 1.52759 * 109.48151 * 122.55698 * 20 19 18 22 22 C 1.52677 * 110.66828 * 64.31676 * 21 20 19 23 23 C 1.53278 * 109.77053 * 289.71502 * 22 21 20 24 24 S 1.66407 * 120.99436 * 265.02588 * 19 18 16 25 25 O 1.42098 * 104.53612 * 344.36336 * 24 19 18 26 26 O 1.42093 * 104.53429 * 112.73414 * 24 19 18 27 27 H 1.08998 * 109.47196 * 60.00230 * 1 2 3 28 28 H 1.08998 * 109.47082 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47031 * 299.99874 * 1 2 3 30 30 H 1.09008 * 109.46726 * 294.99767 * 4 2 1 31 31 H 1.09000 * 109.47495 * 54.99536 * 4 2 1 32 32 H 1.08995 * 109.47138 * 299.99401 * 5 4 2 33 33 H 1.09000 * 109.47528 * 60.00230 * 5 4 2 34 34 H 0.96994 * 120.00100 * 0.02562 * 6 5 4 35 35 H 0.97004 * 119.99652 * 180.02562 * 10 9 7 36 36 H 0.97003 * 119.99686 * 95.00437 * 15 2 1 37 37 H 1.09003 * 109.47417 * 60.00526 * 18 16 15 38 38 H 1.09002 * 109.47535 * 300.00616 * 18 16 15 39 39 H 1.09002 * 109.46956 * 242.56107 * 20 19 18 40 40 H 1.09001 * 109.46945 * 2.55864 * 20 19 18 41 41 H 1.09001 * 109.23619 * 184.62044 * 21 20 19 42 42 H 1.09000 * 109.23438 * 304.00477 * 21 20 19 43 43 H 1.09002 * 109.41802 * 169.62423 * 22 21 20 44 44 H 1.09000 * 109.42065 * 49.80960 * 22 21 20 45 45 H 1.08999 * 109.67800 * 302.03532 * 23 22 21 46 46 H 1.08995 * 109.68202 * 181.48651 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 7 4.0532 -1.3043 -2.5096 7 6 5.3953 -1.3411 -2.7789 8 1 6.0938 -0.8604 -2.1100 9 6 5.8580 -1.9955 -3.9124 10 7 5.0068 -2.5810 -4.7278 11 14 7.6888 -2.0451 -4.2801 12 1 8.4272 -1.3172 -3.2171 13 1 8.1469 -3.4571 -4.3235 14 1 7.9477 -1.4003 -5.5925 15 7 2.0183 -0.6905 1.1962 16 6 2.1471 -0.0181 2.3572 17 8 1.8582 1.1585 2.4117 18 6 2.6500 -0.7283 3.5874 19 7 2.6986 0.2129 4.7091 20 6 1.5072 0.4750 5.5297 21 6 1.8161 0.1589 6.9919 22 6 2.8923 1.0983 7.5306 23 6 4.2428 0.7622 6.8883 24 16 4.1039 1.0177 5.0920 25 8 5.1219 0.3060 4.4018 26 8 3.8268 2.3796 4.7962 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.7516 -1.7715 -1.2055 31 1 1.6054 -0.2618 -2.1370 32 1 3.8531 0.4371 -1.3574 33 1 3.9995 -1.0727 -0.4260 34 1 3.4259 -1.7357 -3.1105 35 1 5.3302 -3.0386 -5.5196 36 1 2.2491 -1.6317 1.1526 37 1 3.6493 -1.1201 3.3979 38 1 1.9778 -1.5507 3.8325 39 1 1.2254 1.5239 5.4364 40 1 0.6851 -0.1538 5.1879 41 1 0.9084 0.2756 7.5840 42 1 2.1656 -0.8705 7.0706 43 1 2.9664 0.9823 8.6119 44 1 2.6252 2.1285 7.2950 45 1 4.4976 -0.2778 7.0924 46 1 5.0149 1.4161 7.2933 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668143518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:31 Heat of formation + Delta-G solvation = -130.265180 kcal Electronic energy + Delta-G solvation = -27433.368721 eV Core-core repulsion = 23484.021694 eV Total energy + Delta-G solvation = -3949.347026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.91895 -38.58875 -38.20092 -37.64115 -37.02231 -36.10211 -34.98913 -33.62521 -32.26109 -30.35158 -29.43127 -27.94816 -25.89782 -25.20757 -23.37436 -22.30189 -22.19390 -21.51074 -19.80813 -19.22969 -18.51666 -18.23193 -17.84441 -17.22151 -16.77344 -16.61148 -16.43867 -15.94902 -15.52832 -15.36813 -15.22479 -15.00198 -14.92650 -14.76434 -14.53251 -14.28385 -13.84135 -13.43091 -13.31281 -13.21489 -13.15050 -13.10733 -12.91976 -12.89245 -12.69282 -12.51708 -12.39737 -12.24249 -12.02012 -11.96327 -11.93205 -11.86218 -11.64919 -11.34869 -11.12699 -10.97909 -10.04941 -9.89650 -9.03407 -7.98645 -5.27637 -0.79708 1.45529 1.46362 1.49489 1.57079 1.66012 2.27929 2.53540 2.80231 3.18814 3.34759 3.44828 3.60938 3.76078 3.78062 3.88096 4.05364 4.12232 4.16174 4.22359 4.37694 4.40238 4.46850 4.55624 4.57574 4.63921 4.67249 4.75745 4.87274 4.87755 4.98410 5.00115 5.04499 5.16556 5.21505 5.26301 5.33184 5.36845 5.46402 5.54717 5.60688 6.24557 6.61218 7.30325 7.31008 8.05030 8.30685 9.24784 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.015398 B = 0.002741 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.009375 B =10214.359721 C =11543.968806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.149 3.851 3 H 0.057 0.943 4 C -0.116 4.116 5 C 0.152 3.848 6 N -0.744 5.744 7 C -0.250 4.250 8 H 0.067 0.933 9 C -0.072 4.072 10 N -0.966 5.966 11 Si 0.973 3.027 12 H -0.272 1.272 13 H -0.287 1.287 14 H -0.291 1.291 15 N -0.713 5.713 16 C 0.478 3.522 17 O -0.574 6.574 18 C 0.106 3.894 19 N -0.978 5.978 20 C 0.110 3.890 21 C -0.149 4.149 22 C -0.117 4.117 23 C -0.580 4.580 24 S 2.574 3.426 25 O -1.000 7.000 26 O -1.001 7.001 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.085 0.915 31 H 0.078 0.922 32 H -0.001 1.001 33 H 0.024 0.976 34 H 0.377 0.623 35 H 0.253 0.747 36 H 0.415 0.585 37 H 0.122 0.878 38 H 0.160 0.840 39 H 0.055 0.945 40 H 0.107 0.893 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.118 0.882 44 H 0.072 0.928 45 H 0.166 0.834 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.705 0.777 31.285 33.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.043 3.957 3 H 0.076 0.924 4 C -0.155 4.155 5 C 0.025 3.975 6 N -0.387 5.387 7 C -0.382 4.382 8 H 0.085 0.915 9 C -0.264 4.264 10 N -0.616 5.616 11 Si 0.801 3.199 12 H -0.196 1.196 13 H -0.213 1.213 14 H -0.218 1.218 15 N -0.366 5.366 16 C 0.263 3.737 17 O -0.453 6.453 18 C -0.023 4.023 19 N -0.816 5.816 20 C -0.015 4.015 21 C -0.187 4.187 22 C -0.156 4.156 23 C -0.715 4.715 24 S 2.674 3.326 25 O -0.991 6.991 26 O -0.990 6.990 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.017 0.983 33 H 0.042 0.958 34 H 0.209 0.791 35 H 0.062 0.938 36 H 0.251 0.749 37 H 0.140 0.860 38 H 0.177 0.823 39 H 0.074 0.926 40 H 0.125 0.875 41 H 0.134 0.866 42 H 0.117 0.883 43 H 0.136 0.864 44 H 0.091 0.909 45 H 0.184 0.816 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.168 2.144 30.712 32.749 hybrid contribution 0.918 -0.404 -0.737 1.244 sum -10.250 1.740 29.975 31.726 Atomic orbital electron populations 1.22028 0.93165 1.03141 1.02230 1.20798 0.95160 0.96043 0.83660 0.92447 1.21887 0.94176 1.02022 0.97373 1.20772 0.93875 0.93853 0.88961 1.42537 1.04471 1.65219 1.26474 1.19618 0.85288 1.27787 1.05476 0.91454 1.25546 1.02100 1.01097 0.97666 1.69804 1.34500 1.41788 1.15555 0.85089 0.80042 0.77232 0.77489 1.19626 1.21347 1.21801 1.46091 1.66713 1.14817 1.09021 1.22147 0.77477 0.87748 0.86321 1.90728 1.51308 1.17620 1.85657 1.21411 1.06137 0.92317 0.82477 1.57018 1.26220 1.59034 1.39314 1.21749 0.87741 1.02016 0.89951 1.22137 1.01157 1.01383 0.94056 1.21499 0.89582 1.00669 1.03838 1.30294 1.08254 1.14223 1.18681 1.05913 0.73098 0.73432 0.80163 1.93542 1.58058 1.73893 1.73596 1.93563 1.83932 1.37190 1.84333 0.91010 0.90563 0.93125 0.89666 0.90319 0.98275 0.95837 0.79085 0.93787 0.74863 0.86003 0.82298 0.92629 0.87503 0.86641 0.88317 0.86376 0.90928 0.81600 0.83064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.48 71.98 0.68 -2.60 16 2 C 0.15 4.15 2.57 44.99 0.12 4.26 16 3 H 0.06 1.97 7.58 -2.38 -0.02 1.95 16 4 C -0.12 -3.62 4.87 30.59 0.15 -3.47 16 5 C 0.15 6.41 6.15 86.38 0.53 6.94 16 6 N -0.74 -39.15 5.60 -343.44 -1.92 -41.07 16 7 C -0.25 -14.63 9.99 84.03 0.84 -13.79 16 8 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 9 C -0.07 -4.22 5.50 84.86 0.47 -3.76 16 10 N -0.97 -59.72 13.06 21.65 0.28 -59.44 16 11 Si 0.97 47.51 29.55 68.60 2.03 49.54 16 12 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 14 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 15 N -0.71 -17.39 4.53 -442.54 -2.00 -19.40 16 16 C 0.48 12.85 7.86 87.65 0.69 13.53 16 17 O -0.57 -20.84 16.09 -3.03 -0.05 -20.89 16 18 C 0.11 1.87 6.13 85.63 0.53 2.39 16 19 N -0.98 -17.71 2.47 -519.02 -1.28 -18.99 16 20 C 0.11 1.28 6.35 86.20 0.55 1.83 16 21 C -0.15 -0.58 5.80 30.41 0.18 -0.41 16 22 C -0.12 -0.66 5.78 30.58 0.18 -0.49 16 23 C -0.58 -4.91 6.59 72.08 0.47 -4.43 16 24 S 2.57 57.84 5.73 -56.49 -0.32 57.51 16 25 O -1.00 -29.76 16.51 -127.68 -2.11 -31.87 16 26 O -1.00 -32.99 18.10 -127.68 -2.31 -35.30 16 27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 33 H 0.02 0.98 7.75 -2.39 -0.02 0.97 16 34 H 0.38 20.49 7.67 -92.71 -0.71 19.78 16 35 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.41 7.91 8.60 -92.71 -0.80 7.11 16 37 H 0.12 2.25 6.88 -2.39 -0.02 2.23 16 38 H 0.16 1.15 8.07 -2.39 -0.02 1.13 16 39 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.11 0.85 7.92 -2.39 -0.02 0.83 16 41 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 42 H 0.10 0.07 8.11 -2.39 -0.02 0.05 16 43 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 44 H 0.07 0.62 8.13 -2.39 -0.02 0.60 16 45 H 0.17 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.15 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -91.61 386.46 -2.84 -94.45 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: -0.52 Total: 25.44 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 5.38 Total: 0.02 kcal Atomic # 7 Polarization: -133.97 SS G_CDS: -4.93 Total: -138.90 kcal Atomic # 8 Polarization: -83.60 SS G_CDS: -4.47 Total: -88.07 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Atomic # 16 Polarization: 57.84 SS G_CDS: -0.32 Total: 57.51 kcal Total: -91.61 -2.84 -94.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668143518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.810 kcal (2) G-P(sol) polarization free energy of solvation -91.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds