Wall clock time and date at job start Tue Mar 31 2020 18:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47149 * 2 1 4 4 N 1.46499 * 109.47235 * 120.00431 * 2 1 3 5 5 C 1.34785 * 119.99492 * 274.99489 * 4 2 1 6 6 O 1.21583 * 119.99849 * 0.02562 * 5 4 2 7 7 C 1.47610 * 119.99406 * 179.97438 * 5 4 2 8 8 C 1.39722 * 120.06035 * 0.02562 * 7 5 4 9 9 C 1.37838 * 120.11384 * 180.30247 * 8 7 5 10 10 C 1.38704 * 120.07158 * 359.43385 * 9 8 7 11 11 C 1.39676 * 120.10054 * 0.56464 * 10 9 8 12 12 C 1.38090 * 120.12015 * 359.71815 * 11 10 9 13 13 N 1.40268 * 119.24719 * 179.70026 * 11 10 9 14 14 C 1.35091 * 118.96407 * 15.49776 * 13 11 10 15 15 O 1.21301 * 120.13315 * 181.67443 * 14 13 11 16 16 C 1.50751 * 119.72492 * 1.65264 * 14 13 11 17 17 O 1.35844 * 120.50625 * 180.31618 * 10 9 8 18 18 C 1.53007 * 109.46956 * 240.00267 * 2 1 3 19 19 H 1.08999 * 109.46974 * 299.99840 * 18 2 1 20 20 C 1.53003 * 109.46987 * 179.97438 * 18 2 1 21 21 N 1.46491 * 109.47186 * 59.99940 * 18 2 1 22 22 C 1.36945 * 120.00135 * 205.00196 * 21 18 2 23 23 H 1.08000 * 119.99397 * 359.97438 * 22 21 18 24 24 C 1.38812 * 120.00056 * 180.02562 * 22 21 18 25 25 N 1.31619 * 120.00303 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99835 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47165 * 89.99718 * 26 24 22 28 28 H 1.48493 * 109.47270 * 209.99878 * 26 24 22 29 29 H 1.48501 * 109.47244 * 329.99947 * 26 24 22 30 30 H 1.08999 * 109.47149 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47381 * 299.99816 * 1 2 3 32 32 H 1.08998 * 109.47466 * 59.99922 * 1 2 3 33 33 H 0.96991 * 120.00466 * 94.99944 * 4 2 1 34 34 H 1.08002 * 119.93961 * 0.02562 * 8 7 5 35 35 H 1.07998 * 119.96671 * 179.71591 * 9 8 7 36 36 H 1.07998 * 120.15107 * 179.97438 * 12 11 10 37 37 H 0.97003 * 120.51957 * 195.52160 * 13 11 10 38 38 H 1.09000 * 109.43719 * 88.68537 * 16 14 13 39 39 H 1.08997 * 109.43568 * 208.61101 * 16 14 13 40 40 H 1.08998 * 109.46822 * 59.99915 * 20 18 2 41 41 H 1.08998 * 109.46961 * 179.97438 * 20 18 2 42 42 H 1.08999 * 109.47237 * 299.99807 * 20 18 2 43 43 H 0.97000 * 120.00577 * 24.99894 * 21 18 2 44 44 H 0.96991 * 119.99974 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8575 1.1613 2.4118 7 6 2.6386 -0.7143 3.5624 8 6 2.9712 -2.0700 3.5010 9 6 3.4244 -2.7226 4.6273 10 6 3.5626 -2.0321 5.8223 11 6 3.2319 -0.6768 5.8905 12 6 2.7718 -0.0184 4.7673 13 7 3.3727 0.0025 7.1097 14 6 4.1081 -0.5623 8.0921 15 8 4.2188 -0.0078 9.1653 16 6 4.7901 -1.8846 7.8493 17 8 4.0145 -2.6650 6.9361 18 6 2.0399 -0.7212 -1.2493 19 1 1.6766 -1.7489 -1.2493 20 6 3.5700 -0.7207 -1.2497 21 7 1.5516 -0.0306 -2.4454 22 6 1.4207 -0.7137 -3.6251 23 1 1.6780 -1.7615 -3.6736 24 6 0.9585 -0.0592 -4.7585 25 7 0.6455 1.2179 -4.6995 26 14 0.7807 -0.9909 -6.3678 27 1 -0.5815 -1.5759 -6.4532 28 1 0.9915 -0.0595 -7.5050 29 1 1.7907 -2.0780 -6.4246 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.2490 -1.6318 1.1526 34 1 2.8687 -2.6085 2.5704 35 1 3.6764 -3.7716 4.5783 36 1 2.5156 1.0294 4.8195 37 1 2.9483 0.8641 7.2453 38 1 5.7800 -1.7102 7.4277 39 1 4.8870 -2.4214 8.7930 40 1 3.9336 -1.2343 -0.3597 41 1 3.9332 -1.2349 -2.1394 42 1 3.9329 0.3071 -1.2499 43 1 1.3209 0.9105 -2.4019 44 1 0.3222 1.6751 -5.4914 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733977096.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:26 Heat of formation + Delta-G solvation = -63.888142 kcal Electronic energy + Delta-G solvation = -27814.649765 eV Core-core repulsion = 23732.737112 eV Total energy + Delta-G solvation = -4081.912653 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.96300 -40.14752 -39.10126 -37.81978 -36.69828 -35.65127 -34.02648 -32.00054 -31.23698 -30.44777 -29.46100 -28.47492 -28.17372 -24.85927 -24.03178 -23.51117 -22.78036 -21.41805 -20.22059 -19.74804 -19.39607 -18.51431 -17.65888 -17.48602 -16.83958 -16.61215 -15.90956 -15.59301 -15.13591 -14.99290 -14.86105 -14.60797 -14.37838 -14.27338 -13.70833 -13.62524 -13.46429 -13.30098 -13.21305 -13.03710 -12.46531 -11.95466 -11.87696 -11.75823 -11.71509 -11.30032 -11.20631 -10.99753 -10.85719 -10.73696 -10.64817 -10.24947 -10.02191 -9.91218 -9.69975 -9.23476 -9.06912 -8.84188 -8.49549 -7.03079 -5.81151 -3.11033 0.28033 0.65527 1.68850 2.18562 2.58190 2.74925 3.14298 3.40242 3.40939 3.45853 3.47455 3.50104 4.07941 4.33838 4.44782 4.51951 4.57096 4.64934 4.69754 4.83372 5.21237 5.24351 5.42553 5.45460 5.57661 5.62911 5.70667 5.79855 5.85187 5.91673 5.99876 6.06290 6.15960 6.24575 6.34716 6.37620 6.46996 6.56907 6.69168 6.77131 6.88976 6.98404 7.22756 7.57104 7.64832 8.23425 8.36394 9.47817 10.02759 10.37551 11.41103 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.033556 B = 0.002046 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.223294 B =13680.875746 C =14147.182133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.135 3.865 3 H 0.087 0.913 4 N -0.709 5.709 5 C 0.557 3.443 6 O -0.536 6.536 7 C -0.118 4.118 8 C -0.073 4.073 9 C -0.112 4.112 10 C 0.098 3.902 11 C 0.082 3.918 12 C -0.063 4.063 13 N -0.658 5.658 14 C 0.491 3.509 15 O -0.511 6.511 16 C 0.050 3.950 17 O -0.299 6.299 18 C 0.169 3.831 19 H 0.051 0.949 20 C -0.165 4.165 21 N -0.718 5.718 22 C -0.239 4.239 23 H 0.071 0.929 24 C -0.012 4.012 25 N -0.930 5.930 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.397 0.603 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.419 0.581 38 H 0.103 0.897 39 H 0.148 0.852 40 H 0.035 0.965 41 H 0.055 0.945 42 H 0.047 0.953 43 H 0.386 0.614 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.570 -9.013 23.673 26.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.031 3.969 3 H 0.105 0.895 4 N -0.360 5.360 5 C 0.343 3.657 6 O -0.414 6.414 7 C -0.122 4.122 8 C -0.093 4.093 9 C -0.131 4.131 10 C 0.051 3.949 11 C -0.013 4.013 12 C -0.084 4.084 13 N -0.305 5.305 14 C 0.278 3.722 15 O -0.386 6.386 16 C -0.028 4.028 17 O -0.213 6.213 18 C 0.058 3.942 19 H 0.069 0.931 20 C -0.225 4.225 21 N -0.360 5.360 22 C -0.370 4.370 23 H 0.089 0.911 24 C -0.208 4.208 25 N -0.578 5.578 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.232 0.768 34 H 0.159 0.841 35 H 0.165 0.835 36 H 0.166 0.834 37 H 0.259 0.741 38 H 0.121 0.879 39 H 0.165 0.835 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.220 0.780 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.481 -8.315 24.223 26.681 hybrid contribution -0.184 0.017 -0.906 0.924 sum 7.297 -8.299 23.317 25.803 Atomic orbital electron populations 1.22056 0.94746 1.01871 1.02450 1.21402 0.94556 0.97663 0.83293 0.89496 1.45998 1.66361 1.13920 1.09693 1.18000 0.78174 0.86567 0.82960 1.90799 1.50324 1.15426 1.84868 1.19857 1.03972 0.94204 0.94160 1.21220 0.96427 0.93140 0.98518 1.20457 1.02631 1.01318 0.88699 1.18834 0.99261 0.89047 0.87735 1.17879 1.05133 0.91387 0.86919 1.20704 0.97701 1.00744 0.89271 1.43745 1.50808 1.23741 1.12254 1.21541 0.79047 0.87955 0.83676 1.90836 1.59919 1.64188 1.23618 1.23242 0.94803 0.89005 0.95708 1.86222 1.67545 1.37479 1.30086 1.20395 0.92136 0.95583 0.86102 0.93111 1.22459 0.99022 1.01179 0.99850 1.42289 1.78203 1.10696 1.04805 1.19178 1.36943 0.93856 0.87069 0.91136 1.24749 1.02024 0.95966 0.98077 1.69657 1.50534 1.08600 1.28999 0.86197 0.77760 0.78570 0.83660 1.21720 1.21811 1.20796 0.92994 0.93387 0.90000 0.76791 0.84065 0.83461 0.83415 0.74121 0.87914 0.83464 0.94594 0.92585 0.93369 0.78021 0.93428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.33 37.15 0.35 -2.17 16 2 C 0.14 2.17 2.21 -67.93 -0.15 2.02 16 3 H 0.09 1.59 7.58 -51.93 -0.39 1.20 16 4 N -0.71 -8.80 4.33 -54.82 -0.24 -9.04 16 5 C 0.56 7.35 7.73 -12.43 -0.10 7.26 16 6 O -0.54 -9.13 16.00 5.29 0.08 -9.04 16 7 C -0.12 -1.17 5.88 -104.94 -0.62 -1.79 16 8 C -0.07 -0.53 9.53 -39.17 -0.37 -0.91 16 9 C -0.11 -0.75 9.98 -39.56 -0.39 -1.14 16 10 C 0.10 0.78 6.45 -38.87 -0.25 0.52 16 11 C 0.08 0.69 6.54 -83.51 -0.55 0.14 16 12 C -0.06 -0.59 9.49 -39.06 -0.37 -0.96 16 13 N -0.66 -5.20 5.47 -9.68 -0.05 -5.25 16 14 C 0.49 4.16 7.94 -10.82 -0.09 4.08 16 15 O -0.51 -5.93 17.95 5.54 0.10 -5.83 16 16 C 0.05 0.28 7.16 36.03 0.26 0.54 16 17 O -0.30 -2.19 10.44 -19.25 -0.20 -2.39 16 18 C 0.17 3.03 2.52 -67.93 -0.17 2.85 16 19 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 20 C -0.16 -2.73 9.33 37.16 0.35 -2.39 16 21 N -0.72 -16.80 4.43 -53.42 -0.24 -17.04 16 22 C -0.24 -6.28 9.93 -15.06 -0.15 -6.43 16 23 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 25 N -0.93 -27.27 13.06 55.49 0.72 -26.54 16 26 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.55 7.45 -51.93 -0.39 1.16 16 33 H 0.40 3.76 6.40 -40.82 -0.26 3.49 16 34 H 0.14 0.72 6.38 -52.49 -0.34 0.38 16 35 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.15 1.39 7.65 -52.49 -0.40 0.99 16 37 H 0.42 2.81 8.89 -40.82 -0.36 2.45 16 38 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.15 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.04 0.47 7.45 -51.93 -0.39 0.08 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.39 9.79 7.58 -40.82 -0.31 9.48 16 44 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 372.56 15.07 5.61 5.61 Total: -1.00 -33.61 372.56 -7.34 -40.95 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -5.76 Total: 10.67 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -2.35 Total: 1.21 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.20 Total: -57.87 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.02 Total: -17.26 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.61 -7.34 -40.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733977096.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.934 kcal (2) G-P(sol) polarization free energy of solvation -33.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds