Wall clock time and date at job start Tue Mar 31 2020 18:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47149 * 2 1 4 4 N 1.46499 * 109.47235 * 120.00431 * 2 1 3 5 5 C 1.34785 * 119.99492 * 274.99489 * 4 2 1 6 6 O 1.21583 * 119.99849 * 0.02562 * 5 4 2 7 7 C 1.47610 * 119.99406 * 179.97438 * 5 4 2 8 8 C 1.39722 * 120.06035 * 0.02562 * 7 5 4 9 9 C 1.37838 * 120.11384 * 180.30247 * 8 7 5 10 10 C 1.38704 * 120.07158 * 359.43385 * 9 8 7 11 11 C 1.39676 * 120.10054 * 0.56464 * 10 9 8 12 12 C 1.38090 * 120.12015 * 359.71815 * 11 10 9 13 13 N 1.40268 * 119.24719 * 179.70026 * 11 10 9 14 14 C 1.35091 * 118.96407 * 15.49776 * 13 11 10 15 15 O 1.21301 * 120.13315 * 181.67443 * 14 13 11 16 16 C 1.50751 * 119.72492 * 1.65264 * 14 13 11 17 17 O 1.35844 * 120.50625 * 180.31618 * 10 9 8 18 18 C 1.53007 * 109.46956 * 240.00267 * 2 1 3 19 19 H 1.08999 * 109.46974 * 299.99840 * 18 2 1 20 20 C 1.53003 * 109.46987 * 179.97438 * 18 2 1 21 21 N 1.46491 * 109.47186 * 59.99940 * 18 2 1 22 22 C 1.36945 * 120.00135 * 205.00196 * 21 18 2 23 23 H 1.08000 * 119.99397 * 359.97438 * 22 21 18 24 24 C 1.38812 * 120.00056 * 180.02562 * 22 21 18 25 25 N 1.31619 * 120.00303 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99835 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47165 * 89.99718 * 26 24 22 28 28 H 1.48493 * 109.47270 * 209.99878 * 26 24 22 29 29 H 1.48501 * 109.47244 * 329.99947 * 26 24 22 30 30 H 1.08999 * 109.47149 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47381 * 299.99816 * 1 2 3 32 32 H 1.08998 * 109.47466 * 59.99922 * 1 2 3 33 33 H 0.96991 * 120.00466 * 94.99944 * 4 2 1 34 34 H 1.08002 * 119.93961 * 0.02562 * 8 7 5 35 35 H 1.07998 * 119.96671 * 179.71591 * 9 8 7 36 36 H 1.07998 * 120.15107 * 179.97438 * 12 11 10 37 37 H 0.97003 * 120.51957 * 195.52160 * 13 11 10 38 38 H 1.09000 * 109.43719 * 88.68537 * 16 14 13 39 39 H 1.08997 * 109.43568 * 208.61101 * 16 14 13 40 40 H 1.08998 * 109.46822 * 59.99915 * 20 18 2 41 41 H 1.08998 * 109.46961 * 179.97438 * 20 18 2 42 42 H 1.08999 * 109.47237 * 299.99807 * 20 18 2 43 43 H 0.97000 * 120.00577 * 24.99894 * 21 18 2 44 44 H 0.96991 * 119.99974 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8575 1.1613 2.4118 7 6 2.6386 -0.7143 3.5624 8 6 2.9712 -2.0700 3.5010 9 6 3.4244 -2.7226 4.6273 10 6 3.5626 -2.0321 5.8223 11 6 3.2319 -0.6768 5.8905 12 6 2.7718 -0.0184 4.7673 13 7 3.3727 0.0025 7.1097 14 6 4.1081 -0.5623 8.0921 15 8 4.2188 -0.0078 9.1653 16 6 4.7901 -1.8846 7.8493 17 8 4.0145 -2.6650 6.9361 18 6 2.0399 -0.7212 -1.2493 19 1 1.6766 -1.7489 -1.2493 20 6 3.5700 -0.7207 -1.2497 21 7 1.5516 -0.0306 -2.4454 22 6 1.4207 -0.7137 -3.6251 23 1 1.6780 -1.7615 -3.6736 24 6 0.9585 -0.0592 -4.7585 25 7 0.6455 1.2179 -4.6995 26 14 0.7807 -0.9909 -6.3678 27 1 -0.5815 -1.5759 -6.4532 28 1 0.9915 -0.0595 -7.5050 29 1 1.7907 -2.0780 -6.4246 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.2490 -1.6318 1.1526 34 1 2.8687 -2.6085 2.5704 35 1 3.6764 -3.7716 4.5783 36 1 2.5156 1.0294 4.8195 37 1 2.9483 0.8641 7.2453 38 1 5.7800 -1.7102 7.4277 39 1 4.8870 -2.4214 8.7930 40 1 3.9336 -1.2343 -0.3597 41 1 3.9332 -1.2349 -2.1394 42 1 3.9329 0.3071 -1.2499 43 1 1.3209 0.9105 -2.4019 44 1 0.3222 1.6751 -5.4914 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733977096.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:25 Heat of formation + Delta-G solvation = -88.871211 kcal Electronic energy + Delta-G solvation = -27815.733112 eV Core-core repulsion = 23732.737112 eV Total energy + Delta-G solvation = -4082.996000 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.57491 -41.14662 -39.85727 -38.63309 -37.97771 -36.33128 -35.59019 -33.58958 -32.09504 -31.31268 -30.49452 -30.09933 -28.85290 -25.88662 -25.65250 -24.40397 -23.76401 -22.42118 -21.54710 -20.57658 -20.07436 -19.33802 -19.24155 -18.26673 -17.68257 -17.34243 -17.06559 -16.52297 -16.21081 -16.07389 -15.82469 -15.51703 -15.43493 -15.24707 -14.97447 -14.84920 -14.68976 -14.22670 -14.13660 -14.01136 -13.78611 -13.42168 -13.16392 -12.92637 -12.68466 -12.56037 -12.45429 -12.34334 -12.23238 -12.12579 -11.94909 -11.70621 -11.43136 -11.33845 -11.03906 -10.94441 -10.14687 -9.81635 -9.13811 -8.97812 -7.89049 -5.17653 -0.39824 0.03107 1.07060 1.51443 1.52432 1.58700 1.60546 1.79200 2.05578 2.21500 2.61934 2.71266 2.86039 3.45383 3.47908 3.62793 3.82906 3.98132 4.04027 4.07757 4.08042 4.09383 4.24455 4.35148 4.39960 4.63690 4.66116 4.79712 4.83808 4.92030 4.95140 5.01350 5.09881 5.18287 5.21429 5.34244 5.35747 5.39644 5.53074 5.56750 5.62323 5.65319 6.11819 6.31872 6.57199 6.60252 7.23101 7.38320 8.12589 8.34877 9.34446 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.033556 B = 0.002046 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.223294 B =13680.875746 C =14147.182133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.151 3.849 3 H 0.059 0.941 4 N -0.695 5.695 5 C 0.558 3.442 6 O -0.583 6.583 7 C -0.135 4.135 8 C -0.058 4.058 9 C -0.104 4.104 10 C 0.100 3.900 11 C 0.076 3.924 12 C -0.069 4.069 13 N -0.658 5.658 14 C 0.488 3.512 15 O -0.550 6.550 16 C 0.052 3.948 17 O -0.300 6.300 18 C 0.167 3.833 19 H 0.066 0.934 20 C -0.156 4.156 21 N -0.731 5.731 22 C -0.228 4.228 23 H 0.083 0.917 24 C -0.079 4.079 25 N -0.971 5.971 26 Si 0.970 3.030 27 H -0.289 1.289 28 H -0.303 1.303 29 H -0.267 1.267 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.415 0.585 34 H 0.169 0.831 35 H 0.178 0.822 36 H 0.136 0.864 37 H 0.420 0.580 38 H 0.128 0.872 39 H 0.171 0.829 40 H 0.077 0.923 41 H 0.043 0.957 42 H 0.030 0.970 43 H 0.371 0.629 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.917 -12.676 24.736 29.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.045 3.955 3 H 0.078 0.922 4 N -0.348 5.348 5 C 0.347 3.653 6 O -0.464 6.464 7 C -0.139 4.139 8 C -0.077 4.077 9 C -0.122 4.122 10 C 0.053 3.947 11 C -0.019 4.019 12 C -0.091 4.091 13 N -0.305 5.305 14 C 0.276 3.724 15 O -0.427 6.427 16 C -0.025 4.025 17 O -0.214 6.214 18 C 0.058 3.942 19 H 0.084 0.916 20 C -0.216 4.216 21 N -0.372 5.372 22 C -0.360 4.360 23 H 0.101 0.899 24 C -0.271 4.271 25 N -0.622 5.622 26 Si 0.800 3.200 27 H -0.216 1.216 28 H -0.230 1.230 29 H -0.192 1.192 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.254 0.746 34 H 0.187 0.813 35 H 0.196 0.804 36 H 0.154 0.846 37 H 0.260 0.740 38 H 0.145 0.855 39 H 0.188 0.812 40 H 0.096 0.904 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.203 0.797 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.860 -12.068 25.312 29.408 hybrid contribution -0.564 1.109 -1.083 1.650 sum 8.296 -10.958 24.229 27.856 Atomic orbital electron populations 1.21940 0.95126 1.02328 1.00896 1.20925 0.94088 0.96427 0.84071 0.92233 1.45700 1.66079 1.14609 1.08366 1.18477 0.77104 0.86055 0.83708 1.90783 1.52347 1.17649 1.85589 1.19587 1.06274 0.95430 0.92610 1.21477 0.94611 0.91700 0.99955 1.20781 1.01301 1.02524 0.87625 1.19098 0.98479 0.88670 0.88474 1.17870 1.05646 0.91875 0.86548 1.20635 0.98197 1.00474 0.89791 1.43815 1.50593 1.23887 1.12242 1.22135 0.78540 0.88725 0.82981 1.90819 1.61371 1.65493 1.25037 1.23492 0.94989 0.87378 0.96615 1.86229 1.67725 1.37537 1.29934 1.20593 0.93020 0.95761 0.84793 0.91584 1.22318 0.97402 1.00537 1.01301 1.42495 1.78440 1.10239 1.05984 1.19597 1.34359 0.94282 0.87790 0.89942 1.25536 1.03336 0.96806 1.01447 1.69826 1.52823 1.10277 1.29276 0.85184 0.77848 0.77409 0.79577 1.21644 1.22993 1.19154 0.91417 0.93421 0.93058 0.74583 0.81337 0.80420 0.84577 0.74023 0.85454 0.81176 0.90398 0.93772 0.95102 0.79718 0.94303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.33 71.98 0.67 -4.08 16 2 C 0.15 4.75 2.21 44.99 0.10 4.85 16 3 H 0.06 2.24 7.58 -2.39 -0.02 2.23 16 4 N -0.70 -15.84 4.33 -445.62 -1.93 -17.77 16 5 C 0.56 14.21 7.73 86.72 0.67 14.88 16 6 O -0.58 -20.29 16.00 -3.98 -0.06 -20.36 16 7 C -0.14 -2.43 5.88 -20.07 -0.12 -2.55 16 8 C -0.06 -0.61 9.53 22.53 0.21 -0.40 16 9 C -0.10 -0.92 9.98 22.29 0.22 -0.70 16 10 C 0.10 1.27 6.45 22.73 0.15 1.41 16 11 C 0.08 1.16 6.54 38.10 0.25 1.41 16 12 C -0.07 -1.26 9.49 22.61 0.21 -1.04 16 13 N -0.66 -10.02 5.47 -302.74 -1.66 -11.68 16 14 C 0.49 7.72 7.94 87.62 0.70 8.42 16 15 O -0.55 -12.61 17.95 -3.09 -0.06 -12.67 16 16 C 0.05 0.43 7.16 71.25 0.51 0.94 16 17 O -0.30 -3.35 10.44 -91.79 -0.96 -4.31 16 18 C 0.17 5.77 2.52 45.00 0.11 5.88 16 19 H 0.07 2.12 8.08 -2.39 -0.02 2.10 16 20 C -0.16 -4.85 9.33 71.98 0.67 -4.17 16 21 N -0.73 -34.38 4.43 -322.94 -1.43 -35.81 16 22 C -0.23 -11.86 9.93 84.03 0.83 -11.03 16 23 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 24 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 25 N -0.97 -58.52 13.06 21.65 0.28 -58.23 16 26 Si 0.97 44.79 29.55 68.60 2.03 46.81 16 27 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 28 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 29 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 30 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 2.00 7.45 -2.39 -0.02 1.99 16 33 H 0.42 6.24 6.40 -92.71 -0.59 5.65 16 34 H 0.17 0.79 6.38 -2.91 -0.02 0.77 16 35 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 36 H 0.14 2.71 7.65 -2.91 -0.02 2.69 16 37 H 0.42 5.82 8.89 -92.71 -0.82 4.99 16 38 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.17 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.08 1.75 7.45 -2.39 -0.02 1.73 16 41 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.37 19.48 7.58 -92.71 -0.70 18.78 16 44 H 0.25 14.66 8.31 -92.72 -0.77 13.89 16 Total: -1.00 -75.47 372.56 0.83 -74.64 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: -1.05 Total: 29.49 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 5.66 Total: 9.88 kcal Atomic # 7 Polarization: -118.75 SS G_CDS: -4.74 Total: -123.49 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -1.08 Total: -37.34 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -75.47 0.83 -74.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733977096.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.232 kcal (2) G-P(sol) polarization free energy of solvation -75.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds