Wall clock time and date at job start Tue Mar 31 2020 18:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46874 * 2 1 4 4 C 1.53003 * 109.46755 * 240.00155 * 2 1 3 5 5 N 1.46505 * 109.46966 * 184.99537 * 4 2 1 6 6 C 1.46497 * 120.00036 * 270.00288 * 5 4 2 7 7 C 1.36929 * 119.99748 * 89.99783 * 5 4 2 8 8 H 1.08002 * 120.00421 * 342.72762 * 7 5 4 9 9 C 1.38816 * 119.99895 * 162.99628 * 7 5 4 10 10 N 1.31618 * 119.99949 * 345.44266 * 9 7 5 11 11 Si 1.86800 * 119.99946 * 165.44090 * 9 7 5 12 12 H 1.48495 * 109.47321 * 90.00322 * 11 9 7 13 13 H 1.48504 * 109.46901 * 209.99971 * 11 9 7 14 14 H 1.48496 * 109.47206 * 329.99860 * 11 9 7 15 15 N 1.46493 * 109.47450 * 120.00341 * 2 1 3 16 16 C 1.34783 * 119.99986 * 275.00022 * 15 2 1 17 17 O 1.21281 * 119.99513 * 0.02562 * 16 15 2 18 18 C 1.50698 * 120.00205 * 179.97438 * 16 15 2 19 19 N 1.46898 * 109.47051 * 179.97438 * 18 16 15 20 20 C 1.46467 * 111.00376 * 295.85569 * 19 18 16 21 21 C 1.53174 * 109.90458 * 163.00073 * 20 19 18 22 22 S 1.81811 * 108.67760 * 62.63647 * 21 20 19 23 23 O 1.42105 * 108.70576 * 193.43093 * 22 21 20 24 24 O 1.42094 * 108.82970 * 61.98756 * 22 21 20 25 25 C 1.81819 * 101.02193 * 307.68416 * 22 21 20 26 26 C 1.46476 * 110.99746 * 169.99948 * 19 18 16 27 27 H 1.08997 * 109.47058 * 299.99278 * 1 2 3 28 28 H 1.08993 * 109.47296 * 60.00358 * 1 2 3 29 29 H 1.09004 * 109.46720 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47142 * 65.00072 * 4 2 1 31 31 H 1.08998 * 109.47398 * 304.99760 * 4 2 1 32 32 H 1.09001 * 109.47359 * 265.07047 * 6 5 4 33 33 H 1.09006 * 109.47127 * 25.07032 * 6 5 4 34 34 H 1.08997 * 109.47143 * 145.06626 * 6 5 4 35 35 H 0.97003 * 119.99867 * 179.97438 * 10 9 7 36 36 H 0.97000 * 120.00390 * 94.99648 * 15 2 1 37 37 H 1.09003 * 109.47124 * 300.00223 * 18 16 15 38 38 H 1.08999 * 109.47178 * 60.00126 * 18 16 15 39 39 H 1.09002 * 109.39765 * 283.13661 * 20 19 18 40 40 H 1.09008 * 109.39732 * 42.86514 * 20 19 18 41 41 H 1.09009 * 109.60427 * 302.88079 * 21 20 19 42 42 H 1.08999 * 109.60345 * 182.39646 * 21 20 19 43 43 H 1.08995 * 109.60596 * 292.56015 * 25 22 21 44 44 H 1.08998 * 109.60367 * 172.07176 * 25 22 21 45 45 H 1.08991 * 109.39888 * 317.13120 * 26 19 18 46 46 H 1.09003 * 109.39670 * 76.87130 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1907 6 6 4.3342 0.2342 -1.7614 7 6 4.0850 -1.9157 -0.6025 8 1 3.5078 -2.5498 0.0542 9 6 5.4213 -2.2019 -0.8458 10 7 6.0484 -1.6170 -1.8443 11 14 6.3296 -3.4172 0.2440 12 1 6.1916 -4.7849 -0.3176 13 1 7.7672 -3.0496 0.3041 14 1 5.7523 -3.3831 1.6117 15 7 2.0184 -0.6906 1.1960 16 6 2.1472 -0.0183 2.3571 17 8 1.8582 1.1583 2.4117 18 6 2.6490 -0.7289 3.5876 19 7 2.6991 0.2152 4.7120 20 6 3.6695 1.2826 4.4584 21 6 3.4132 2.4568 5.4080 22 16 3.6610 1.8882 7.1170 23 8 3.1298 2.8637 8.0034 24 8 5.0103 1.4699 7.2701 25 6 2.5879 0.4209 7.1542 26 6 2.9534 -0.4841 5.9736 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5137 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.7516 -0.1583 -2.1370 31 1 1.6054 -1.7198 -1.2953 32 1 4.6149 -0.0329 -2.7802 33 1 3.7754 1.1700 -1.7720 34 1 5.2330 0.3546 -1.1566 35 1 6.9823 -1.8168 -2.0141 36 1 2.2491 -1.6318 1.1525 37 1 1.9762 -1.5507 3.8325 38 1 3.6482 -1.1214 3.3985 39 1 4.6778 0.9008 4.6186 40 1 3.5722 1.6229 3.4273 41 1 2.3893 2.8100 5.2849 42 1 4.1104 3.2650 5.1867 43 1 1.5455 0.7280 7.0706 44 1 2.7387 -0.1188 8.0891 45 1 2.3505 -1.3913 6.0126 46 1 4.0089 -0.7496 6.0341 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754333251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:00 Heat of formation + Delta-G solvation = -89.833774 kcal Electronic energy + Delta-G solvation = -28218.942618 eV Core-core repulsion = 24271.348829 eV Total energy + Delta-G solvation = -3947.593789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.97562 -39.10327 -38.07601 -37.71077 -37.11809 -35.65835 -33.28963 -32.81173 -32.47791 -31.32556 -28.06718 -27.35945 -27.25119 -25.10463 -23.63157 -22.62462 -21.71234 -21.16398 -19.79603 -18.79068 -18.08685 -17.82968 -17.31196 -17.10660 -16.95204 -16.79619 -16.60327 -15.97356 -15.74405 -15.58816 -15.37573 -14.89154 -14.65931 -14.42966 -13.96891 -13.83324 -13.65203 -13.43852 -13.39072 -13.24582 -13.15375 -13.09651 -12.97439 -12.81001 -12.74962 -12.66710 -12.65055 -12.48989 -12.15695 -12.00488 -11.84924 -11.75296 -11.68523 -11.09503 -10.59060 -10.55597 -9.79059 -9.49826 -8.78124 -7.76795 -5.19359 -0.94347 1.49791 1.51202 1.58825 1.69621 1.84787 2.18638 2.54695 2.67788 2.77728 3.07209 3.38554 3.52715 3.68427 3.71727 3.91814 3.95224 4.06243 4.16993 4.23539 4.29313 4.42012 4.45343 4.48497 4.57555 4.71690 4.79071 4.79510 4.85453 4.85869 4.93772 4.96443 5.04018 5.21436 5.34912 5.48707 5.60567 5.64322 5.73804 5.82879 5.88800 6.33616 6.83585 7.17791 7.50213 7.91435 8.36778 9.28050 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.013238 B = 0.003584 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.562763 B = 7811.001571 C = 8952.506260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.128 3.872 3 H 0.048 0.952 4 C 0.141 3.859 5 N -0.615 5.615 6 C 0.182 3.818 7 C -0.239 4.239 8 H 0.090 0.910 9 C -0.061 4.061 10 N -0.945 5.945 11 Si 0.957 3.043 12 H -0.288 1.288 13 H -0.309 1.309 14 H -0.256 1.256 15 N -0.697 5.697 16 C 0.507 3.493 17 O -0.572 6.572 18 C 0.040 3.960 19 N -0.543 5.543 20 C 0.055 3.945 21 C -0.581 4.581 22 S 2.417 3.583 23 O -0.982 6.982 24 O -0.979 6.979 25 C -0.571 4.571 26 C 0.055 3.945 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.000 1.000 33 H 0.017 0.983 34 H 0.016 0.984 35 H 0.242 0.758 36 H 0.406 0.594 37 H 0.143 0.857 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.090 0.910 41 H 0.150 0.850 42 H 0.142 0.858 43 H 0.161 0.839 44 H 0.167 0.833 45 H 0.131 0.869 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.489 0.166 14.595 18.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.021 3.979 3 H 0.066 0.934 4 C 0.015 3.985 5 N -0.337 5.337 6 C 0.036 3.964 7 C -0.369 4.369 8 H 0.108 0.892 9 C -0.255 4.255 10 N -0.594 5.594 11 Si 0.786 3.214 12 H -0.216 1.216 13 H -0.237 1.237 14 H -0.180 1.180 15 N -0.349 5.349 16 C 0.294 3.706 17 O -0.453 6.453 18 C -0.090 4.090 19 N -0.268 5.268 20 C -0.074 4.074 21 C -0.712 4.712 22 S 2.604 3.396 23 O -0.979 6.979 24 O -0.976 6.976 25 C -0.704 4.704 26 C -0.073 4.073 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.019 0.981 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.051 0.949 36 H 0.243 0.757 37 H 0.160 0.840 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.108 0.892 41 H 0.168 0.832 42 H 0.160 0.840 43 H 0.179 0.821 44 H 0.184 0.816 45 H 0.149 0.851 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.423 1.583 15.300 19.159 hybrid contribution 1.561 -1.217 -0.748 2.116 sum -9.862 0.366 14.552 17.583 Atomic orbital electron populations 1.21990 0.93841 1.02596 1.01989 1.21575 0.94067 0.96267 0.86036 0.93399 1.21238 0.83180 0.99390 0.94731 1.44111 1.00872 1.20622 1.68132 1.20467 0.92476 0.87421 0.96006 1.19531 0.93948 1.03621 1.19813 0.89207 1.25654 0.99424 1.01467 0.98963 1.70284 1.10341 1.48112 1.30632 0.85419 0.77341 0.78681 0.79936 1.21555 1.23704 1.18004 1.45932 1.65601 1.14523 1.08796 1.20841 0.77378 0.87215 0.85205 1.90610 1.51829 1.17241 1.85588 1.22014 1.03196 0.95335 0.88460 1.60848 1.50929 1.12571 1.02461 1.21867 0.93409 0.90372 1.01737 1.30072 1.13341 1.07753 1.19995 1.07817 0.76047 0.78255 0.77524 1.93537 1.81270 1.60222 1.62855 1.93542 1.35033 1.83148 1.85900 1.30027 1.16835 1.16393 1.07170 1.22013 1.02362 0.97749 0.85199 0.93588 0.90803 0.91222 0.92072 0.91744 0.98136 0.96436 0.96502 0.94858 0.75738 0.83971 0.90792 0.92916 0.89155 0.83216 0.83994 0.82076 0.81563 0.85100 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.48 71.98 0.68 -2.81 16 2 C 0.13 3.95 2.88 45.00 0.13 4.07 16 3 H 0.05 1.77 7.58 -2.39 -0.02 1.75 16 4 C 0.14 4.83 5.30 86.38 0.46 5.29 16 5 N -0.61 -27.48 2.82 -726.92 -2.05 -29.53 16 6 C 0.18 8.75 8.97 127.77 1.15 9.90 16 7 C -0.24 -11.29 8.81 84.04 0.74 -10.55 16 8 H 0.09 3.74 6.40 -2.91 -0.02 3.72 16 9 C -0.06 -3.16 5.09 84.86 0.43 -2.73 16 10 N -0.95 -53.88 10.45 21.65 0.23 -53.66 16 11 Si 0.96 41.29 29.58 68.60 2.03 43.32 16 12 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 13 H -0.31 -14.26 7.11 99.48 0.71 -13.56 16 14 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 15 N -0.70 -20.43 4.49 -442.53 -1.99 -22.41 16 16 C 0.51 14.84 7.34 87.66 0.64 15.48 16 17 O -0.57 -20.33 14.00 -3.03 -0.04 -20.37 16 18 C 0.04 0.84 5.45 85.56 0.47 1.31 16 19 N -0.54 -10.88 4.19 -902.36 -3.78 -14.65 16 20 C 0.06 1.31 4.94 86.44 0.43 1.74 16 21 C -0.58 -11.40 6.58 72.04 0.47 -10.93 16 22 S 2.42 46.34 5.34 -56.49 -0.30 46.04 16 23 O -0.98 -25.25 18.11 -127.39 -2.31 -27.55 16 24 O -0.98 -25.85 18.10 -127.39 -2.31 -28.16 16 25 C -0.57 -6.40 6.58 72.04 0.47 -5.93 16 26 C 0.05 0.73 5.41 86.45 0.47 1.20 16 27 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 31 H 0.06 2.06 8.04 -2.39 -0.02 2.04 16 32 H 0.00 0.02 7.51 -2.39 -0.02 0.00 16 33 H 0.02 0.74 8.03 -2.38 -0.02 0.72 16 34 H 0.02 0.88 6.95 -2.39 -0.02 0.86 16 35 H 0.24 13.71 8.31 -92.71 -0.77 12.94 16 36 H 0.41 11.21 6.58 -92.71 -0.61 10.60 16 37 H 0.14 1.95 7.84 -2.39 -0.02 1.93 16 38 H 0.07 1.61 8.13 -2.39 -0.02 1.59 16 39 H 0.05 1.23 7.93 -2.39 -0.02 1.21 16 40 H 0.09 2.73 5.61 -2.38 -0.01 2.72 16 41 H 0.15 2.74 8.14 -2.38 -0.02 2.72 16 42 H 0.14 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.16 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.17 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.13 1.03 7.77 -2.39 -0.02 1.01 16 46 H 0.06 0.86 7.93 -2.39 -0.02 0.84 16 Total: -1.00 -76.10 374.92 -3.61 -79.71 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.37 Total: 21.20 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 6.54 Total: 6.06 kcal Atomic # 7 Polarization: -112.66 SS G_CDS: -7.59 Total: -120.25 kcal Atomic # 8 Polarization: -71.42 SS G_CDS: -4.66 Total: -76.08 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 16 Polarization: 46.34 SS G_CDS: -0.30 Total: 46.04 kcal Total: -76.10 -3.61 -79.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754333251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.120 kcal (2) G-P(sol) polarization free energy of solvation -76.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds