Wall clock time and date at job start Tue Mar 31 2020 17:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.64158 * 2 1 4 4 C 1.54316 * 110.87319 * 236.74680 * 2 1 3 5 5 N 1.47020 * 107.27568 * 219.37341 * 4 2 1 6 6 C 1.34776 * 125.65281 * 178.97789 * 5 4 2 7 7 O 1.21285 * 119.99841 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.00365 * 179.97438 * 6 5 4 9 9 C 1.52995 * 109.47186 * 180.02562 * 8 6 5 10 10 S 1.81405 * 109.46966 * 179.97438 * 9 8 6 11 11 O 1.42097 * 110.54234 * 291.62354 * 10 9 8 12 12 O 1.42096 * 110.54423 * 68.37470 * 10 9 8 13 13 N 1.65599 * 104.44669 * 179.97438 * 10 9 8 14 14 C 1.46496 * 120.00274 * 90.00272 * 13 10 9 15 15 C 1.46500 * 120.00167 * 269.99535 * 13 10 9 16 16 C 1.47422 * 108.70191 * 358.94070 * 5 4 2 17 17 C 1.54917 * 104.83074 * 24.12901 * 16 5 4 18 18 H 1.08996 * 111.00376 * 204.87436 * 17 16 5 19 19 N 1.46501 * 111.00397 * 81.06403 * 17 16 5 20 20 C 1.36932 * 120.00032 * 86.45261 * 19 17 16 21 21 H 1.08003 * 120.00163 * 0.02562 * 20 19 17 22 22 C 1.38820 * 120.00065 * 179.97438 * 20 19 17 23 23 N 1.31622 * 119.99916 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 119.99876 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47433 * 89.99673 * 24 22 20 26 26 H 1.48494 * 109.47186 * 209.99962 * 24 22 20 27 27 H 1.48511 * 109.47146 * 329.99498 * 24 22 20 28 28 H 1.09004 * 109.47379 * 296.86359 * 1 2 3 29 29 H 1.08996 * 109.47147 * 56.85706 * 1 2 3 30 30 H 1.09001 * 109.47442 * 176.86442 * 1 2 3 31 31 H 1.09000 * 109.88340 * 338.79687 * 4 2 1 32 32 H 1.09005 * 109.88355 * 99.80448 * 4 2 1 33 33 H 1.09004 * 109.47135 * 299.99842 * 8 6 5 34 34 H 1.08993 * 109.47035 * 59.99497 * 8 6 5 35 35 H 1.08995 * 109.47224 * 299.99440 * 9 8 6 36 36 H 1.08993 * 109.47602 * 59.99773 * 9 8 6 37 37 H 1.09003 * 109.47509 * 89.99739 * 14 13 10 38 38 H 1.09000 * 109.47659 * 209.99625 * 14 13 10 39 39 H 1.09002 * 109.46755 * 329.99636 * 14 13 10 40 40 H 1.09004 * 109.46815 * 90.00172 * 15 13 10 41 41 H 1.08996 * 109.47470 * 210.00341 * 15 13 10 42 42 H 1.09006 * 109.47161 * 330.00852 * 15 13 10 43 43 H 1.08998 * 110.36873 * 265.28987 * 16 5 4 44 44 H 1.09005 * 110.36491 * 142.96394 * 16 5 4 45 45 H 0.96995 * 119.99785 * 266.45481 * 19 17 16 46 46 H 0.96993 * 119.99666 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0798 -0.7906 -1.2058 5 7 3.2494 -1.5471 -0.7352 6 6 4.0004 -2.3786 -1.4842 7 8 3.7295 -2.5529 -2.6535 8 6 5.1767 -3.0918 -0.8689 9 6 5.8532 -3.9662 -1.9265 10 16 7.2696 -4.8242 -1.1859 11 8 8.2994 -3.8997 -0.8631 12 8 6.8293 -5.7897 -0.2410 13 7 7.9012 -5.7240 -2.4244 14 6 8.9346 -5.1531 -3.2917 15 6 7.4266 -7.0911 -2.6526 16 6 3.4652 -1.2447 0.6914 17 6 2.0789 -0.7933 1.2152 18 1 2.1819 -0.1495 2.0886 19 7 1.2294 -1.9486 1.5153 20 6 1.3000 -2.5498 2.7435 21 1 1.9817 -2.1721 3.4912 22 6 0.4947 -3.6441 3.0280 23 7 0.5622 -4.2216 4.2088 24 14 -0.6849 -4.2969 1.7351 25 1 0.0004 -5.3283 0.9154 26 1 -1.8666 -4.8997 2.4024 27 1 -1.1263 -3.1815 0.8595 28 1 -0.3634 0.4644 0.9168 29 1 -0.3633 0.5618 -0.8604 30 1 -0.3634 -1.0261 -0.0562 31 1 1.3190 -1.4773 -1.5769 32 1 2.3750 -0.1018 -1.9973 33 1 5.8905 -2.3585 -0.4935 34 1 4.8321 -3.7177 -0.0458 35 1 5.1397 -4.6995 -2.3022 36 1 6.1979 -3.3400 -2.7494 37 1 9.9186 -5.3695 -2.8755 38 1 8.8567 -5.5912 -4.2867 39 1 8.7976 -4.0738 -3.3581 40 1 6.5812 -7.0721 -3.3405 41 1 8.2311 -7.6881 -3.0820 42 1 7.1142 -7.5302 -1.7051 43 1 4.1929 -0.4409 0.8030 44 1 3.7992 -2.1364 1.2219 45 1 0.6169 -2.2875 0.8439 46 1 -0.0002 -4.9865 4.4075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755120865.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:57 Heat of formation + Delta-G solvation = -80.887127 kcal Electronic energy + Delta-G solvation = -27778.722722 eV Core-core repulsion = 23831.516888 eV Total energy + Delta-G solvation = -3947.205833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.01808 -37.90239 -37.32577 -36.50371 -36.02609 -34.05669 -33.35904 -32.38569 -30.88693 -28.40729 -28.25028 -27.01323 -25.14194 -24.34032 -23.63491 -21.89359 -19.51013 -19.16078 -19.06351 -18.05789 -17.77812 -17.12885 -16.69658 -16.23027 -16.05058 -15.58476 -15.04103 -14.71102 -14.51949 -14.33632 -14.23430 -13.63526 -13.36625 -13.28923 -12.94527 -12.85385 -12.76278 -12.63534 -12.59884 -12.45309 -12.23115 -12.10624 -11.86568 -11.83917 -11.77799 -11.60388 -11.52680 -11.07325 -11.02199 -10.84272 -10.63652 -10.34783 -10.10153 -9.79887 -9.64100 -9.36145 -9.11887 -8.42360 -7.38360 -5.86531 -3.23627 0.00812 2.36965 2.72690 3.12990 3.30150 3.34460 3.40486 3.64381 3.95073 4.21126 4.41930 4.50636 4.56552 4.60038 4.90119 4.97880 4.99090 5.04615 5.06236 5.21851 5.26635 5.27053 5.37316 5.43314 5.48632 5.51947 5.55331 5.58459 5.66175 5.71235 5.78508 5.95210 5.98422 6.12337 6.16406 6.17803 6.31385 6.41330 6.56542 6.63304 7.69848 7.87906 8.26416 8.32565 9.09286 9.81850 10.00181 11.31102 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.013069 B = 0.003503 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.903922 B = 7990.431812 C = 9073.815398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.116 4.116 3 H 0.086 0.914 4 C 0.115 3.885 5 N -0.604 5.604 6 C 0.538 3.462 7 O -0.552 6.552 8 C -0.132 4.132 9 C -0.609 4.609 10 S 2.610 3.390 11 O -0.952 6.952 12 O -0.946 6.946 13 N -1.009 6.009 14 C 0.094 3.906 15 C 0.081 3.919 16 C 0.062 3.938 17 C 0.178 3.822 18 H 0.082 0.918 19 N -0.735 5.735 20 C -0.253 4.253 21 H 0.094 0.906 22 C 0.013 3.987 23 N -0.927 5.927 24 Si 0.878 3.122 25 H -0.284 1.284 26 H -0.289 1.289 27 H -0.277 1.277 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.364 0.636 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.903 2.732 -15.752 20.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.135 4.135 3 H 0.104 0.896 4 C -0.008 4.008 5 N -0.336 5.336 6 C 0.325 3.675 7 O -0.431 6.431 8 C -0.173 4.173 9 C -0.738 4.738 10 S 2.702 3.298 11 O -0.942 6.942 12 O -0.936 6.936 13 N -0.848 5.848 14 C -0.052 4.052 15 C -0.065 4.065 16 C -0.064 4.064 17 C 0.066 3.934 18 H 0.099 0.901 19 N -0.377 5.377 20 C -0.382 4.382 21 H 0.111 0.889 22 C -0.184 4.184 23 N -0.574 5.574 24 Si 0.709 3.291 25 H -0.210 1.210 26 H -0.215 1.215 27 H -0.203 1.203 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.082 0.918 44 H 0.105 0.895 45 H 0.198 0.802 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.189 2.504 -15.296 20.351 hybrid contribution -1.293 -0.535 -1.499 2.051 sum 11.896 1.969 -16.794 20.674 Atomic orbital electron populations 1.21643 0.93661 1.02422 1.01519 1.22537 0.96932 0.99013 0.95067 0.89577 1.21966 0.87688 0.94435 0.96673 1.48359 1.29314 1.43832 1.12135 1.19737 0.83263 0.78656 0.85830 1.90659 1.71647 1.64318 1.16511 1.21324 0.97706 0.99953 0.98307 1.30435 1.19693 1.12832 1.10854 1.05172 0.76011 0.74594 0.73988 1.93595 1.53526 1.65223 1.81853 1.93620 1.83376 1.58815 1.57793 1.57363 1.51647 1.24471 1.51314 1.21480 0.90681 0.98610 0.94390 1.21644 1.00017 0.81625 1.03187 1.23506 1.01353 1.01528 0.80005 1.21319 0.88167 0.89245 0.94673 0.90069 1.42738 1.46076 1.33987 1.14940 1.19042 1.19990 1.09330 0.89880 0.88862 1.24644 0.99377 0.98105 0.96292 1.69686 1.42660 1.24374 1.20637 0.86672 0.81648 0.79077 0.81748 1.21026 1.21539 1.20315 0.91612 0.93275 0.92142 0.91736 0.91955 0.87481 0.86766 0.84294 0.84553 0.92224 0.90984 0.91002 0.92585 0.90627 0.89491 0.91755 0.89464 0.80172 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 8.72 37.16 0.32 -1.57 16 2 C -0.12 -1.59 3.41 -88.79 -0.30 -1.90 16 3 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.11 1.71 6.46 -3.07 -0.02 1.69 16 5 N -0.60 -9.58 3.33 -170.52 -0.57 -10.15 16 6 C 0.54 8.76 7.85 -10.99 -0.09 8.67 16 7 O -0.55 -10.29 16.31 5.55 0.09 -10.20 16 8 C -0.13 -1.74 4.71 -27.89 -0.13 -1.87 16 9 C -0.61 -6.74 5.47 37.16 0.20 -6.54 16 10 S 2.61 30.21 5.38 -107.50 -0.58 29.63 16 11 O -0.95 -13.10 17.09 -57.54 -0.98 -14.08 16 12 O -0.95 -14.24 16.57 -57.54 -0.95 -15.19 16 13 N -1.01 -9.05 3.52 -129.20 -0.45 -9.51 16 14 C 0.09 0.64 10.20 59.84 0.61 1.25 16 15 C 0.08 0.61 10.64 59.85 0.64 1.24 16 16 C 0.06 0.94 6.38 -2.53 -0.02 0.93 16 17 C 0.18 2.98 3.44 -65.78 -0.23 2.76 16 18 H 0.08 1.33 8.13 -51.93 -0.42 0.91 16 19 N -0.74 -15.89 4.54 -51.34 -0.23 -16.12 16 20 C -0.25 -6.63 10.47 -15.06 -0.16 -6.79 16 21 H 0.09 2.59 8.06 -52.48 -0.42 2.17 16 22 C 0.01 0.35 5.50 -17.43 -0.10 0.26 16 23 N -0.93 -28.19 13.97 55.49 0.78 -27.41 16 24 Si 0.88 21.67 27.74 -169.99 -4.71 16.96 16 25 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.99 6.37 -51.93 -0.33 0.66 16 31 H 0.06 1.05 7.78 -51.93 -0.40 0.65 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.11 1.53 7.85 -51.93 -0.41 1.12 16 35 H 0.14 1.50 8.10 -51.93 -0.42 1.08 16 36 H 0.14 1.31 8.10 -51.93 -0.42 0.89 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.33 8.07 -51.93 -0.42 -0.09 16 39 H 0.07 0.45 7.79 -51.93 -0.40 0.04 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 42 H 0.09 0.76 6.91 -51.93 -0.36 0.40 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.09 1.46 7.48 -51.93 -0.39 1.07 16 45 H 0.36 8.03 3.95 -40.82 -0.16 7.86 16 46 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 382.51 15.07 5.76 5.76 Total: -1.00 -36.40 382.51 -8.65 -45.04 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -7.53 Total: 7.13 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 0.74 Total: -1.87 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: -0.48 Total: -63.19 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -1.85 Total: -39.47 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.96 kcal Atomic # 16 Polarization: 30.21 SS G_CDS: -0.58 Total: 29.63 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.40 -8.65 -45.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755120865.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.845 kcal (2) G-P(sol) polarization free energy of solvation -36.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds