Wall clock time and date at job start Tue Mar 31 2020 17:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.64158 * 2 1 4 4 C 1.54316 * 110.87319 * 236.74680 * 2 1 3 5 5 N 1.47020 * 107.27568 * 219.37341 * 4 2 1 6 6 C 1.34776 * 125.65281 * 178.97789 * 5 4 2 7 7 O 1.21285 * 119.99841 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.00365 * 179.97438 * 6 5 4 9 9 C 1.52995 * 109.47186 * 180.02562 * 8 6 5 10 10 S 1.81405 * 109.46966 * 179.97438 * 9 8 6 11 11 O 1.42097 * 110.54234 * 291.62354 * 10 9 8 12 12 O 1.42096 * 110.54423 * 68.37470 * 10 9 8 13 13 N 1.65599 * 104.44669 * 179.97438 * 10 9 8 14 14 C 1.46496 * 120.00274 * 90.00272 * 13 10 9 15 15 C 1.46500 * 120.00167 * 269.99535 * 13 10 9 16 16 C 1.47422 * 108.70191 * 358.94070 * 5 4 2 17 17 C 1.54917 * 104.83074 * 24.12901 * 16 5 4 18 18 H 1.08996 * 111.00376 * 204.87436 * 17 16 5 19 19 N 1.46501 * 111.00397 * 81.06403 * 17 16 5 20 20 C 1.36932 * 120.00032 * 86.45261 * 19 17 16 21 21 H 1.08003 * 120.00163 * 0.02562 * 20 19 17 22 22 C 1.38820 * 120.00065 * 179.97438 * 20 19 17 23 23 N 1.31622 * 119.99916 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 119.99876 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47433 * 89.99673 * 24 22 20 26 26 H 1.48494 * 109.47186 * 209.99962 * 24 22 20 27 27 H 1.48511 * 109.47146 * 329.99498 * 24 22 20 28 28 H 1.09004 * 109.47379 * 296.86359 * 1 2 3 29 29 H 1.08996 * 109.47147 * 56.85706 * 1 2 3 30 30 H 1.09001 * 109.47442 * 176.86442 * 1 2 3 31 31 H 1.09000 * 109.88340 * 338.79687 * 4 2 1 32 32 H 1.09005 * 109.88355 * 99.80448 * 4 2 1 33 33 H 1.09004 * 109.47135 * 299.99842 * 8 6 5 34 34 H 1.08993 * 109.47035 * 59.99497 * 8 6 5 35 35 H 1.08995 * 109.47224 * 299.99440 * 9 8 6 36 36 H 1.08993 * 109.47602 * 59.99773 * 9 8 6 37 37 H 1.09003 * 109.47509 * 89.99739 * 14 13 10 38 38 H 1.09000 * 109.47659 * 209.99625 * 14 13 10 39 39 H 1.09002 * 109.46755 * 329.99636 * 14 13 10 40 40 H 1.09004 * 109.46815 * 90.00172 * 15 13 10 41 41 H 1.08996 * 109.47470 * 210.00341 * 15 13 10 42 42 H 1.09006 * 109.47161 * 330.00852 * 15 13 10 43 43 H 1.08998 * 110.36873 * 265.28987 * 16 5 4 44 44 H 1.09005 * 110.36491 * 142.96394 * 16 5 4 45 45 H 0.96995 * 119.99785 * 266.45481 * 19 17 16 46 46 H 0.96993 * 119.99666 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0798 -0.7906 -1.2058 5 7 3.2494 -1.5471 -0.7352 6 6 4.0004 -2.3786 -1.4842 7 8 3.7295 -2.5529 -2.6535 8 6 5.1767 -3.0918 -0.8689 9 6 5.8532 -3.9662 -1.9265 10 16 7.2696 -4.8242 -1.1859 11 8 8.2994 -3.8997 -0.8631 12 8 6.8293 -5.7897 -0.2410 13 7 7.9012 -5.7240 -2.4244 14 6 8.9346 -5.1531 -3.2917 15 6 7.4266 -7.0911 -2.6526 16 6 3.4652 -1.2447 0.6914 17 6 2.0789 -0.7933 1.2152 18 1 2.1819 -0.1495 2.0886 19 7 1.2294 -1.9486 1.5153 20 6 1.3000 -2.5498 2.7435 21 1 1.9817 -2.1721 3.4912 22 6 0.4947 -3.6441 3.0280 23 7 0.5622 -4.2216 4.2088 24 14 -0.6849 -4.2969 1.7351 25 1 0.0004 -5.3283 0.9154 26 1 -1.8666 -4.8997 2.4024 27 1 -1.1263 -3.1815 0.8595 28 1 -0.3634 0.4644 0.9168 29 1 -0.3633 0.5618 -0.8604 30 1 -0.3634 -1.0261 -0.0562 31 1 1.3190 -1.4773 -1.5769 32 1 2.3750 -0.1018 -1.9973 33 1 5.8905 -2.3585 -0.4935 34 1 4.8321 -3.7177 -0.0458 35 1 5.1397 -4.6995 -2.3022 36 1 6.1979 -3.3400 -2.7494 37 1 9.9186 -5.3695 -2.8755 38 1 8.8567 -5.5912 -4.2867 39 1 8.7976 -4.0738 -3.3581 40 1 6.5812 -7.0721 -3.3405 41 1 8.2311 -7.6881 -3.0820 42 1 7.1142 -7.5302 -1.7051 43 1 4.1929 -0.4409 0.8030 44 1 3.7992 -2.1364 1.2219 45 1 0.6169 -2.2875 0.8439 46 1 -0.0002 -4.9865 4.4075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755120865.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:57 Heat of formation + Delta-G solvation = -108.841356 kcal Electronic energy + Delta-G solvation = -27779.934908 eV Core-core repulsion = 23831.516888 eV Total energy + Delta-G solvation = -3948.418020 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.27211 -39.21470 -38.34949 -37.28912 -36.92632 -35.77703 -34.48940 -33.78658 -32.61561 -29.70175 -28.96348 -28.13074 -25.96273 -25.57841 -25.13006 -23.25240 -20.86273 -20.33429 -19.98686 -19.77869 -18.84959 -18.19482 -17.71374 -17.37368 -17.11041 -16.77845 -16.36291 -15.93806 -15.84805 -15.46335 -15.27348 -14.96777 -14.54399 -14.49077 -14.11800 -14.01291 -13.83186 -13.73009 -13.57093 -13.40203 -13.35186 -13.25715 -13.21169 -13.08823 -12.92809 -12.62659 -12.59891 -12.53455 -12.26961 -12.13961 -11.99885 -11.94115 -11.62420 -11.41799 -11.12758 -10.97675 -10.02591 -9.77569 -9.24133 -8.02501 -5.34163 -0.90257 1.32134 1.35173 1.41175 1.47951 1.56034 1.97583 2.45339 2.71854 3.05644 3.24110 3.28042 3.39359 3.57345 3.70677 3.73701 3.84247 3.86838 4.03118 4.23081 4.35831 4.37197 4.48358 4.54419 4.60790 4.61292 4.69484 4.72620 4.77357 4.81455 4.94214 4.95311 4.95770 4.97120 5.03661 5.16464 5.19421 5.35068 5.46304 5.53966 5.80550 6.22553 6.45515 7.01725 7.08231 7.85093 8.01153 9.18698 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.013069 B = 0.003503 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.903922 B = 7990.431812 C = 9073.815398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 H 0.124 0.876 4 C 0.111 3.889 5 N -0.608 5.608 6 C 0.531 3.469 7 O -0.579 6.579 8 C -0.140 4.140 9 C -0.600 4.600 10 S 2.626 3.374 11 O -0.976 6.976 12 O -0.987 6.987 13 N -1.007 6.007 14 C 0.082 3.918 15 C 0.072 3.928 16 C 0.067 3.933 17 C 0.162 3.838 18 H 0.089 0.911 19 N -0.740 5.740 20 C -0.220 4.220 21 H 0.071 0.929 22 C -0.056 4.056 23 N -0.979 5.979 24 Si 0.934 3.066 25 H -0.291 1.291 26 H -0.296 1.296 27 H -0.252 1.252 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.032 0.968 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.131 0.869 34 H 0.106 0.894 35 H 0.141 0.859 36 H 0.155 0.845 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.103 0.897 44 H 0.067 0.933 45 H 0.363 0.637 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.608 4.491 -18.333 23.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.118 4.118 3 H 0.142 0.858 4 C -0.012 4.012 5 N -0.340 5.340 6 C 0.320 3.680 7 O -0.460 6.460 8 C -0.181 4.181 9 C -0.729 4.729 10 S 2.720 3.280 11 O -0.966 6.966 12 O -0.977 6.977 13 N -0.847 5.847 14 C -0.062 4.062 15 C -0.073 4.073 16 C -0.057 4.057 17 C 0.052 3.948 18 H 0.107 0.893 19 N -0.383 5.383 20 C -0.351 4.351 21 H 0.089 0.911 22 C -0.248 4.248 23 N -0.630 5.630 24 Si 0.763 3.237 25 H -0.218 1.218 26 H -0.223 1.223 27 H -0.177 1.177 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.149 0.851 34 H 0.124 0.876 35 H 0.159 0.841 36 H 0.173 0.827 37 H 0.078 0.922 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.117 0.883 42 H 0.088 0.912 43 H 0.121 0.879 44 H 0.086 0.914 45 H 0.197 0.803 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.919 4.324 -17.909 23.091 hybrid contribution -1.420 -0.984 -0.748 1.883 sum 12.499 3.341 -18.657 22.704 Atomic orbital electron populations 1.21634 0.93794 1.01052 1.02709 1.22527 0.96745 1.00128 0.92431 0.85799 1.22079 0.87033 0.94402 0.97636 1.48487 1.29487 1.43828 1.12212 1.20189 0.83774 0.78452 0.85616 1.90638 1.72548 1.65182 1.17661 1.21453 0.97453 1.00596 0.98603 1.30368 1.19089 1.12758 1.10735 1.04456 0.75605 0.73944 0.74014 1.93555 1.54380 1.65924 1.82723 1.93567 1.83982 1.60081 1.60088 1.57162 1.51850 1.24693 1.51036 1.21756 0.89942 0.99247 0.95261 1.21836 1.01589 0.80975 1.02865 1.23427 1.00928 1.01932 0.79462 1.21666 0.88459 0.88095 0.96573 0.89344 1.42769 1.47086 1.35205 1.13210 1.19065 1.17314 1.07951 0.90787 0.91078 1.25292 1.02026 0.99388 0.98053 1.69839 1.44609 1.25567 1.22956 0.85740 0.79440 0.78838 0.79677 1.21845 1.22311 1.17672 0.91847 0.90494 0.94915 0.93575 0.90042 0.85098 0.87551 0.84118 0.82684 0.92165 0.88292 0.90402 0.90972 0.88282 0.91219 0.87868 0.91404 0.80311 0.93529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 8.72 71.98 0.63 -2.74 16 2 C -0.10 -2.38 3.41 -9.61 -0.03 -2.41 16 3 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 4 C 0.11 2.99 6.46 86.73 0.56 3.55 16 5 N -0.61 -17.95 3.33 -811.79 -2.70 -20.65 16 6 C 0.53 16.44 7.85 87.66 0.69 17.13 16 7 O -0.58 -20.69 16.31 -3.05 -0.05 -20.74 16 8 C -0.14 -3.53 4.71 29.85 0.14 -3.39 16 9 C -0.60 -12.50 5.47 71.98 0.39 -12.11 16 10 S 2.63 59.29 5.38 -56.49 -0.30 58.98 16 11 O -0.98 -26.11 17.09 -127.65 -2.18 -28.29 16 12 O -0.99 -30.26 16.57 -127.65 -2.12 -32.38 16 13 N -1.01 -16.59 3.52 -562.68 -1.98 -18.57 16 14 C 0.08 0.94 10.20 127.77 1.30 2.25 16 15 C 0.07 0.98 10.64 127.77 1.36 2.34 16 16 C 0.07 1.90 6.38 86.86 0.55 2.46 16 17 C 0.16 5.06 3.44 46.39 0.16 5.22 16 18 H 0.09 2.68 8.13 -2.39 -0.02 2.66 16 19 N -0.74 -31.28 4.54 -316.36 -1.44 -32.72 16 20 C -0.22 -11.63 10.47 84.04 0.88 -10.75 16 21 H 0.07 4.03 8.06 -2.91 -0.02 4.01 16 22 C -0.06 -3.19 5.50 84.86 0.47 -2.72 16 23 N -0.98 -61.48 13.97 21.65 0.30 -61.18 16 24 Si 0.93 45.40 27.74 68.60 1.90 47.31 16 25 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 26 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 27 H -0.25 -11.03 6.52 99.48 0.65 -10.38 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 30 H 0.03 1.00 6.37 -2.39 -0.02 0.98 16 31 H 0.05 1.42 7.78 -2.39 -0.02 1.40 16 32 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.13 2.60 8.14 -2.38 -0.02 2.58 16 34 H 0.11 2.85 7.85 -2.39 -0.02 2.84 16 35 H 0.14 2.91 8.10 -2.39 -0.02 2.89 16 36 H 0.16 2.63 8.10 -2.39 -0.02 2.61 16 37 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.10 0.61 8.07 -2.39 -0.02 0.59 16 39 H 0.08 0.80 7.79 -2.39 -0.02 0.78 16 40 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 41 H 0.10 0.87 8.07 -2.39 -0.02 0.85 16 42 H 0.07 1.21 6.91 -2.38 -0.02 1.19 16 43 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.07 2.20 7.48 -2.38 -0.02 2.18 16 45 H 0.36 15.58 3.95 -92.71 -0.37 15.21 16 46 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -80.36 382.51 -0.92 -81.27 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.54 Total: 28.16 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 7.10 Total: -1.20 kcal Atomic # 7 Polarization: -127.30 SS G_CDS: -5.81 Total: -133.12 kcal Atomic # 8 Polarization: -77.07 SS G_CDS: -4.35 Total: -81.41 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.90 Total: 47.31 kcal Atomic # 16 Polarization: 59.29 SS G_CDS: -0.30 Total: 58.98 kcal Total: -80.36 -0.92 -81.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755120865.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.570 kcal (2) G-P(sol) polarization free energy of solvation -80.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds