Wall clock time and date at job start Tue Mar 31 2020 17:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.88732 * 2 1 4 4 C 1.55126 * 110.90497 * 124.09057 * 2 1 3 5 5 N 1.47423 * 104.72422 * 155.27305 * 4 2 1 6 6 C 1.34777 * 125.65106 * 155.81451 * 5 4 2 7 7 O 1.21278 * 119.99854 * 359.72686 * 6 5 4 8 8 C 1.50703 * 120.00161 * 179.71993 * 6 5 4 9 9 C 1.53000 * 109.46912 * 180.02562 * 8 6 5 10 10 S 1.81408 * 109.46799 * 180.02562 * 9 8 6 11 11 O 1.42102 * 110.54035 * 291.62208 * 10 9 8 12 12 O 1.42098 * 110.54418 * 68.37375 * 10 9 8 13 13 N 1.65603 * 104.44779 * 180.02562 * 10 9 8 14 14 C 1.46496 * 120.00314 * 89.99701 * 13 10 9 15 15 C 1.46501 * 119.99767 * 269.99924 * 13 10 9 16 16 C 1.47025 * 108.70465 * 335.55925 * 5 4 2 17 17 C 1.54327 * 107.27046 * 1.28114 * 16 5 4 18 18 H 1.08993 * 110.72304 * 140.55572 * 17 16 5 19 19 N 1.46504 * 110.71944 * 263.65647 * 17 16 5 20 20 C 1.36931 * 119.99987 * 273.54299 * 19 17 16 21 21 H 1.07997 * 120.00051 * 359.97438 * 20 19 17 22 22 C 1.38812 * 119.99885 * 180.02562 * 20 19 17 23 23 N 1.31617 * 120.00181 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99845 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46992 * 90.00109 * 24 22 20 26 26 H 1.48497 * 109.47101 * 210.00173 * 24 22 20 27 27 H 1.48498 * 109.47164 * 330.00088 * 24 22 20 28 28 H 1.08996 * 109.46799 * 183.87828 * 1 2 3 29 29 H 1.08990 * 109.47128 * 303.88439 * 1 2 3 30 30 H 1.09002 * 109.46644 * 63.88256 * 1 2 3 31 31 H 1.09001 * 110.49878 * 36.43760 * 4 2 1 32 32 H 1.08995 * 110.34630 * 274.03849 * 4 2 1 33 33 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 34 34 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 35 35 H 1.09001 * 109.47194 * 299.99742 * 9 8 6 36 36 H 1.08992 * 109.47399 * 59.99914 * 9 8 6 37 37 H 1.08996 * 109.47226 * 60.00005 * 14 13 10 38 38 H 1.08994 * 109.46997 * 180.02562 * 14 13 10 39 39 H 1.08999 * 109.46914 * 300.00022 * 14 13 10 40 40 H 1.09000 * 109.47620 * 89.99811 * 15 13 10 41 41 H 1.08999 * 109.47127 * 210.00391 * 15 13 10 42 42 H 1.09004 * 109.47215 * 329.99805 * 15 13 10 43 43 H 1.08997 * 109.88721 * 120.69687 * 16 5 4 44 44 H 1.09002 * 109.88145 * 241.71341 * 16 5 4 45 45 H 0.97000 * 120.00021 * 93.54728 * 19 17 16 46 46 H 0.97001 * 119.99689 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0835 -0.8123 1.2001 5 7 3.4271 -1.2434 0.7730 6 6 4.4476 -1.5621 1.5936 7 8 4.3008 -1.5010 2.7959 8 6 5.7712 -1.9947 1.0172 9 6 6.7486 -2.2965 2.1549 10 16 8.3421 -2.8165 1.4610 11 8 8.2213 -4.0841 0.8301 12 8 8.9787 -1.7290 0.8043 13 7 9.2935 -3.1087 2.7846 14 6 9.3257 -4.4456 3.3828 15 6 10.1029 -2.0303 3.3573 16 6 3.4675 -1.2739 -0.6964 17 6 2.0862 -0.8075 -1.2025 18 1 2.1922 -0.1693 -2.0796 19 7 1.2283 -1.9570 -1.5009 20 6 1.2848 -2.5520 -2.7328 21 1 1.9615 -2.1737 -3.4847 22 6 0.4716 -3.6409 -3.0157 23 7 -0.3541 -4.1010 -2.0999 24 14 0.5482 -4.4521 -4.6966 25 1 1.5665 -5.5329 -4.6787 26 1 -0.7794 -5.0284 -5.0291 27 1 0.9184 -3.4401 -5.7183 28 1 -0.3633 -1.0253 0.0695 29 1 -0.3633 0.5729 0.8531 30 1 -0.3633 0.4524 -0.9228 31 1 1.4524 -1.6786 1.3982 32 1 2.1515 -0.1809 2.0859 33 1 6.1741 -1.1966 0.3936 34 1 5.6289 -2.8909 0.4133 35 1 6.8909 -1.4005 2.7590 36 1 6.3455 -3.0947 2.7781 37 1 9.6749 -5.1662 2.6433 38 1 10.0021 -4.4449 4.2375 39 1 8.3239 -4.7202 3.7128 40 1 9.5237 -1.5052 4.1169 41 1 11.0002 -2.4511 3.8110 42 1 10.3871 -1.3319 2.5700 43 1 4.2426 -0.5994 -1.0600 44 1 3.6678 -2.2885 -1.0407 45 1 0.6203 -2.2966 -0.8257 46 1 -0.9221 -4.8621 -2.2975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755120867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:03 Heat of formation + Delta-G solvation = -85.056137 kcal Electronic energy + Delta-G solvation = -27388.686949 eV Core-core repulsion = 23441.300334 eV Total energy + Delta-G solvation = -3947.386615 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.93308 -37.78713 -37.37808 -36.55112 -36.08254 -33.99674 -33.35898 -32.29788 -30.52064 -28.43627 -27.80070 -26.91979 -25.17139 -24.32477 -23.79235 -22.01515 -19.36938 -19.15221 -19.02998 -18.00819 -17.52642 -17.08431 -16.71196 -16.09382 -16.00637 -15.54748 -14.96631 -14.71570 -14.59332 -14.40359 -13.97447 -13.64349 -13.45502 -13.14336 -13.04036 -13.00998 -12.74749 -12.59219 -12.56397 -12.28665 -12.16824 -12.02435 -11.90619 -11.83882 -11.68275 -11.56380 -11.16738 -11.06200 -10.94835 -10.81085 -10.51672 -10.28769 -9.97757 -9.79600 -9.67611 -9.39411 -9.04657 -8.34303 -7.10870 -5.87059 -3.17503 -0.03893 2.32120 2.74438 3.17149 3.38931 3.44600 3.45942 3.59504 3.89910 4.17439 4.39136 4.50374 4.55855 4.61533 4.97452 4.99427 5.02131 5.12486 5.19493 5.22059 5.27976 5.34094 5.41972 5.45283 5.47986 5.51412 5.60163 5.62850 5.72694 5.86978 5.90094 6.12195 6.13096 6.20994 6.29318 6.31896 6.46887 6.54366 6.70229 6.87894 7.61366 7.77310 8.28785 8.31273 9.42901 9.96802 10.31514 11.34937 Molecular weight = 333.16amu Principal moments of inertia in cm(-1) A = 0.013760 B = 0.002954 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.342039 B = 9476.055583 C =10773.486166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 H 0.079 0.921 4 C 0.115 3.885 5 N -0.605 5.605 6 C 0.535 3.465 7 O -0.553 6.553 8 C -0.131 4.131 9 C -0.608 4.608 10 S 2.611 3.389 11 O -0.948 6.948 12 O -0.953 6.953 13 N -1.010 6.010 14 C 0.089 3.911 15 C 0.081 3.919 16 C 0.064 3.936 17 C 0.172 3.828 18 H 0.072 0.928 19 N -0.712 5.712 20 C -0.248 4.248 21 H 0.073 0.927 22 C -0.008 4.008 23 N -0.929 5.929 24 Si 0.908 3.092 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.281 1.281 28 H 0.069 0.931 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.058 0.942 44 H 0.080 0.920 45 H 0.387 0.613 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.813 6.165 11.700 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.134 4.134 3 H 0.098 0.902 4 C -0.008 4.008 5 N -0.337 5.337 6 C 0.322 3.678 7 O -0.432 6.432 8 C -0.172 4.172 9 C -0.737 4.737 10 S 2.704 3.296 11 O -0.938 6.938 12 O -0.943 6.943 13 N -0.848 5.848 14 C -0.056 4.056 15 C -0.064 4.064 16 C -0.062 4.062 17 C 0.060 3.940 18 H 0.089 0.911 19 N -0.353 5.353 20 C -0.379 4.379 21 H 0.091 0.909 22 C -0.204 4.204 23 N -0.576 5.576 24 Si 0.738 3.262 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.207 1.207 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.223 0.777 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 17.088 5.993 11.318 21.354 hybrid contribution -0.549 -0.611 -0.057 0.824 sum 16.539 5.382 11.261 20.720 Atomic orbital electron populations 1.21545 0.93316 1.02997 1.01033 1.22660 0.97025 0.98438 0.95262 0.90216 1.22334 0.82654 0.98433 0.97337 1.48439 1.11899 1.65353 1.08008 1.19720 0.84530 0.77430 0.86135 1.90659 1.83355 1.54666 1.14550 1.21314 0.93817 1.04871 0.97213 1.30419 1.19630 1.13712 1.09977 1.05100 0.76209 0.74580 0.73697 1.93614 1.86678 1.40973 1.72551 1.93584 1.72718 1.56399 1.71595 1.57344 1.59126 1.17205 1.51156 1.21561 1.02647 0.82158 0.99233 1.21663 0.95477 0.89676 0.99592 1.23417 1.01955 1.02551 0.78320 1.21194 0.88185 0.89913 0.94700 0.91053 1.42457 1.45414 1.32779 1.14676 1.19222 1.18662 1.09558 0.90476 0.90929 1.24758 0.98846 0.98855 0.97988 1.69655 1.27233 1.27400 1.33341 0.86194 0.76906 0.79447 0.83622 1.21606 1.21783 1.20658 0.91192 0.93647 0.92027 0.91079 0.91238 0.87502 0.87161 0.84433 0.84327 0.91251 0.90219 0.92125 0.92660 0.90631 0.89686 0.92380 0.90134 0.77731 0.93346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.85 37.16 0.33 -1.67 16 2 C -0.11 -1.72 3.53 -88.35 -0.31 -2.03 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.11 1.85 6.36 -2.41 -0.02 1.83 16 5 N -0.60 -9.88 3.32 -170.38 -0.57 -10.45 16 6 C 0.53 8.62 7.85 -10.98 -0.09 8.53 16 7 O -0.55 -10.23 16.24 5.56 0.09 -10.14 16 8 C -0.13 -1.64 4.90 -27.88 -0.14 -1.78 16 9 C -0.61 -6.32 5.47 37.16 0.20 -6.11 16 10 S 2.61 28.04 5.43 -107.50 -0.58 27.46 16 11 O -0.95 -13.21 17.10 -57.54 -0.98 -14.19 16 12 O -0.95 -12.41 16.58 -57.54 -0.95 -13.36 16 13 N -1.01 -8.35 3.52 -129.21 -0.45 -8.80 16 14 C 0.09 0.60 10.25 59.84 0.61 1.22 16 15 C 0.08 0.51 10.61 59.85 0.63 1.14 16 16 C 0.06 1.03 6.22 -3.06 -0.02 1.01 16 17 C 0.17 3.06 3.36 -66.09 -0.22 2.84 16 18 H 0.07 1.24 8.12 -51.93 -0.42 0.82 16 19 N -0.71 -16.17 4.62 -51.65 -0.24 -16.41 16 20 C -0.25 -6.38 9.98 -15.06 -0.15 -6.53 16 21 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 23 N -0.93 -26.82 13.06 55.49 0.72 -26.10 16 24 Si 0.91 21.56 29.55 -169.99 -5.02 16.53 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H 0.07 1.24 6.39 -51.93 -0.33 0.91 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.26 7.99 -51.93 -0.41 0.84 16 32 H 0.07 1.07 8.03 -51.93 -0.42 0.65 16 33 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.14 1.27 8.10 -51.92 -0.42 0.85 16 36 H 0.14 1.38 8.10 -51.93 -0.42 0.96 16 37 H 0.07 0.51 7.90 -51.93 -0.41 0.10 16 38 H 0.08 0.35 7.79 -51.93 -0.40 -0.06 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.07 0.34 7.92 -51.93 -0.41 -0.08 16 42 H 0.08 0.59 6.91 -51.93 -0.36 0.24 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.08 1.46 8.05 -51.93 -0.42 1.04 16 45 H 0.39 9.47 6.11 -40.82 -0.25 9.22 16 46 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 386.30 15.07 5.82 5.82 Total: -1.00 -34.84 386.30 -9.03 -43.87 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -7.61 Total: 7.62 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 0.74 Total: -1.86 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: -0.53 Total: -61.76 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -1.85 Total: -37.70 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 28.04 SS G_CDS: -0.58 Total: 27.46 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.84 -9.03 -43.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755120867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.184 kcal (2) G-P(sol) polarization free energy of solvation -34.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds